other hairpins
novel_lenNOK_cloningOK_Multihit_nonpairedHIGH_bulgeHIGH (4 loci)
block847779 [novel_lenNOK_cloningOK_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.528 | no | no | 0.44/0.44 | 18/18/0.00 | 0.0 | 0.0 | 11 | 0 | 4 | 0 | 10 | 7 | 3arm | 40 | nd | 0.50 | 4 | 12 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -----------------------------------------------CAGUGCA-------------------- | 12 | miR-148b/152 | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T3S2 | T4S1 | |||
| ----------------------------------------------TCAGTGCATGACAAGGTT---------- | 18 | 4 | 1 | 4 | 3 | |
| rat | acctaggaggcatctcaggagtgtgcttagtatgtgccccattgctTCAGTGCATGACAAGGTTaatcttcagg | |||||
| ************************************************************************** | ||||||
| ------------------------------------------------------------------------------------ | ENSRNOT00000041486 ENSRNOG00000033456 LOC308198 | |||||
| ------------------------------------------------------------------------------------ | ENSRNOT00000051441 ENSRNOG00000033456 LOC308198 | |||||
| ------------------------------------------------------------------------------------ | ENSRNOT00000059913 ENSRNOG00000033456 LOC308198 | |||||
| rat | .(((.(((((.((((.....(((..((.((((((.....))).)))..))..)))....))))...)))))))) | 0.460 -16.00 | ||||
| rat | chromosome:1:52475678:52475751:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000044415|ENSRNOG00000033456 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059913|ENSRNOG00000033456 ## ENSRNOG00000033456|protein_coding|LOC308198| |
block962738 [novel_lenNOK_cloningOK_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.346 | no | no | 0.40/0.48 | 19/24/0.43 | 0.3 | 0.0 | 17 | 0 | 2 | 0 | 18 | 2 | 3arm | 26 | nd | 0.40 | 5 | 21 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------ACAGGAU----------------------------- | 12 | novel | |
| seed | --------------------------------------------------UACAGGA------------------------------ | 5 | novel | |
| seed | -------------------------------------------------UUACAGG------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------GGAUCUC-------------------------- | 1 | novel | |
| seed | ------------------------------------------------GUUACAG-------------------------------- | 1 | novel | |
| seed | --------------------------------------------------------------ACUGUCU------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| --------------------------------------------------TACAGGATCTCTACTGTCT------------------ | 19 | - | 12 | |
| -------------------------------------------------TTACAGGATCTCTACTGTCT------------------ | 20 | - | 5 | |
| -------------------------------------------------------------TACTGTCTTAGGACCACTGCTGT--- | 23 | - | 1 | |
| -----------------------------------------------------AGGATCTCTACTGTCTTAGGACCA---------- | 24 | 1 | - | |
| -----------------------------------------------GGTTACAGGATCTCTACTGTCT------------------ | 22 | - | 1 | |
| ------------------------------------------------GTTACAGGATCTCTACTGTCT------------------ | 21 | - | 1 | |
| rat | caaagtagtccactgtcaaaggacctccagggtctcagcctctccacggTTACAGGATCTCTACTGTCTtaggaccactgctgttgg | |||
| *************************************************************************************** | ||||
| ------------------------------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | |||
| rat | (((((((((.....(((..(((((.....((((((.((((.......))))...)))))).....)))))..))).)))))).))). | 0.710 -21.60 | ||
| rat | chromosome:1:51537862:51537948:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
block421581 [novel_lenNOK_cloningOK_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.018 | no | no | 0.39/0.39 | 18/18/0.00 | 0.0 | 0.0 | 36 | 0 | 2 | 0 | 10 | 34 | 5arm | 13 | nd | 0.39 | 4 | 36 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------------------------------CCUUACA-------------------------- | 18 | novel | |
| seed | -----------CCUUACA------------------------------------------------------------------------------------------------------ | 18 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| ----------GCCTTACATATTGTGGAT-------------------------------------------------------------------------------------------- | 18 | 13 | 5 | |
| --------------------------------------------------------------------------------------GCCTTACATATTGTGGAT---------------- | 18 | 13 | 5 | |
| rat | gcgcaggtcaGCCTTACATATTGTGGATaaccgggcaactgcgcaggcaggccgtactgcggataaccgggcaactgcgcaggccgGCCTTACATATTGTGGATaaccgggcaactgcgc | |||
| ************************************************************************************************************************ | ||||
| ---------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000012750 ENSRNOG00000009281 Commd1 | |||
| rat | ((((((....((((..((((.((((.....((((....((((((((....(((......(((....))))))..)))))))).)))).....)))).)))).......))))..)))))) | 0.810 -49.30 | ||
| rat | chromosome:14:103656620:103656739:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000056897|ENSRNOG00000009281 ## Opposite_strand|Intronic_coding|ENSRNOT00000012750|ENSRNOG00000009281 ## ENSRNOG00000009281|protein_coding|Commd1|COMM domain containing 1 Gene [Source:MGI (curated);Acc:Commd1-001] ## {Repeats: trf 969 987 0 class=trf} |
novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_loopOverlap_bulgeHIGH (4 loci)
sblock1416 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.312 | no | no | 0.35/0.46 | 18/25/0.25 | 0.0 0.5 0.0 0.0 | 0.0 0.3 0.0 0.0 | 1 11 1 1 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 10 27 33 33 | 8 -5 -16 -3 | 5arm 5arm_loop_3arm 5arm_loop_3arm 3arm_loop | 21 40 40 40 | nd nd nd nd | 0.25 0.26 0.36 0.44 | 4 4 5 5 | 16 | 2 | 0 | 14 |
| reads | miRBase family seed | |||
| seed | -----------------------------UGACUAG---------------------------------------------------------- | 7 | novel | |
| seed | ----------------------------UUGACUA----------------------------------------------------------- | 5 | novel | |
| seed | ----------------------------------AGCCUUA----------------------------------------------------- | 1 | novel | |
| seed | ---------------------------UUUGACU------------------------------------------------------------ | 1 | novel | |
| seed | --------------------------------------------UCAUAGG------------------------------------------- | 1 | novel | |
| seed | -----------GGCUCUU---------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ----------------------------TTGACTAGCCTTATGATCA----------------------------------------------- | 19 | - | 6 | |
| ---------------------------TTTGACTAGCCTTATGATC------------------------------------------------ | 19 | - | 3 | |
| ---------------------------TTTGACTAGCCTTATGATCA----------------------------------------------- | 20 | - | 2 | |
| ----------TGGCTCTTTGCTTCCTCTTTGACT------------------------------------------------------------ | 24 | 1 | - | |
| ----------------------------TTGACTAGCCTTATGATC------------------------------------------------ | 18 | - | 1 | |
| ---------------------------------TAGCCTTATGATCATAGGGAGACAC------------------------------------ | 25 | - | 1 | |
| --------------------------CTTTGACTAGCCTTATGATC------------------------------------------------ | 20 | - | 1 | |
| -------------------------------------------ATCATAGGGAGACACTAG--------------------------------- | 18 | - | 1 | |
| rat | gcatgcctaatggctctttgcttcctcTTTGACTAGCCTTATGATCAtagggagacactaggccattggaagatgaggagaacaatgtgtctgt | |||
| ********************************************************************************************** | ||||
| rat | (((.((.((.((.((((((((((((....((.((((((((((....)))))).....))))..))..))))).)))))))..)).)).)).))) | 0.420 -23.80 | ||
| rat | chromosome:1:51064273:51064366:1 | intergenic |
sblock154 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.338 | no | no | 0.37/0.60 | 19/21/0.50 | 0.5 0.0 0.0 0.0 0.0 0.0 | 1.5 0.0 0.0 0.0 0.0 0.0 | 2 2 1 1 1 3 | 0 0 0 0 0 0 | 2 1 1 1 1 1 | 0 0 0 0 0 0 | 1 11 16 26 28 12 | 25 17 13 2 -5 13 | 5arm 5arm 5arm 5arm 3arm_loop 3arm | 4 4 5 52 52 52 | nd nd nd nd nd nd | 0.47 0.55 0.63 0.25 0.43 0.53 | 5 8 8 4 4 4 | 10 | 3 | -4 | -1 |
| reads | miRBase family seed | ||||
| seed | ----------------------------------------------------------------------CCACUGU----------------------- | 3 | novel | ||
| seed | ------------CAGCUUC--------------------------------------------------------------------------------- | 2 | novel | ||
| seed | ---GGACCCU------------------------------------------------------------------------------------------ | 1 | novel | ||
| seed | --UGGACCC------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------CCCACUG----------------------------------------- | 1 | novel | ||
| seed | -----------------UCUAGAA---------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------GCAGGAC------------------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T5S1 | T5S2 | |||
| ---------------------------------------------------------------------TCCACTGTCATTGAAAATG------------ | 19 | - | 3 | - | |
| -----------TCAGCTTCTAGAATTTGCAG--------------------------------------------------------------------- | 20 | - | 2 | - | |
| -ATGGACCCTCTCAGCTTCT-------------------------------------------------------------------------------- | 19 | - | - | 1 | |
| --------------------------TGCAGGACCTCTACTGGCAC------------------------------------------------------ | 20 | 1 | - | - | |
| ---------------------------------------------------TCCCACTGTTGCTGGAGATCC---------------------------- | 21 | - | 1 | - | |
| ----------------TTCTAGAATTTGCAGGACC----------------------------------------------------------------- | 19 | - | 1 | - | |
| --TGGACCCTCTCAGCTTCTAGA----------------------------------------------------------------------------- | 21 | - | 1 | - | |
| rat | cATGGACCCTCTCAGCTTCTAGAATTTGCAGGACCTCTACTGGCACagaaaTCCCACTGTTGCTGGAGATCCACTGTCATTGAAAATGcattgtctcatg | ||||
| **************************************************************************************************** | |||||
| rat | (((((((.....((..(((........((((....(((.(((((((((........)))).))))))))....))))....)))..))....))).)))) | 0.430 -21.20 | |||
| rat | chromosome:1:48364761:48364860:-1 | intergenic |
sblock3619 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.440 | no | no | 0.44/0.61 | 18/25/0.47 | 0.0 0.0 0.0 0.0 0.7 0.0 | 3.0 0.0 0.0 0.0 0.7 0.7 | 2 1 1 3 6 3 | 0 0 0 0 0 0 | 1 1 1 1 2 1 | 0 0 0 0 0 0 | 4 22 37 48 17 4 | 32 17 -2 -12 18 32 | 5arm 5arm 5arm_loop 5arm_loop_3arm 3arm 3arm | 18 18 18 18 18 18 | nd nd nd nd nd nd | 0.38 0.24 0.44 0.58 0.21 0.45 | 3 3 6 5 4 4 | 19 | 3 | 21 | 17 |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------------------------------------------------ACAGAGU---------------------------- | 5 | novel | ||
| seed | -------------------------------------------------------------------------------------------------AGGAUCG---------------- | 3 | novel | ||
| seed | -------------------------------------------------AGGUGUU---------------------------------------------------------------- | 3 | novel | ||
| seed | --------------------------------------------------------------------------------CACAGAC--------------------------------- | 2 | novel | ||
| seed | -----AAAGUCC------------------------------------------------------------------------------------------------------------ | 2 | novel | ||
| seed | -----------------------------------------------------------------------------------AGACAGA------------------------------ | 2 | novel | ||
| seed | -----------------------GGAGAGC------------------------------------------------------------------------------------------ | 1 | novel | ||
| seed | --------------------------------------CUGAGGG--------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T2S2 | T5S1 | |||
| ------------------------------------------------------------------------------------GACAGAGTTCCTTAGGATC----------------- | 19 | - | - | 4 | |
| ------------------------------------------------TAGGTGTTGCACACGCGTGGGAAA------------------------------------------------ | 24 | - | - | 3 | |
| ------------------------------------------------------------------------------------------------TAGGATCGGGGTCAGACCTG---- | 20 | - | - | 2 | |
| ----------------------------------------------------------------------------------CAGACAGAGTTCCTTAGGA------------------- | 19 | - | - | 2 | |
| ------------------------------------------------------------------------------------------------TAGGATCGGGGTCAGACC------ | 18 | - | - | 1 | |
| ----------------------GGGAGAGCTTGCTTGTCTGAG----------------------------------------------------------------------------- | 21 | - | 1 | - | |
| -------------------------------------------------------------------------------TCACAGACAGAGTTCCTTAG--------------------- | 20 | - | - | 1 | |
| ----CAAAGTCCTGGACAGAAAGGGAGA-------------------------------------------------------------------------------------------- | 24 | - | - | 1 | |
| ----CAAAGTCCTGGACAGAAA-------------------------------------------------------------------------------------------------- | 18 | - | - | 1 | |
| -------------------------------------TCTGAGGGTCTTAGGTGTTGCACAC---------------------------------------------------------- | 25 | - | - | 1 | |
| -------------------------------------------------------------------------------TCACAGACAGAGTTCCTTAGGA------------------- | 22 | - | - | 1 | |
| ------------------------------------------------------------------------------------GACAGAGTTCCTTAGGAT------------------ | 18 | 1 | - | - | |
| rat | ggagcaaagtcctggacagaaagggagagcttgcttgtctgagggtctTAGGTGTTGCACACGCGTGGGAAAgtaggcctcaCAGACAGAGTTCCTTAGGATCGGGGTCAGACCTGcttt | ||||
| ************************************************************************************************************************ | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000056932 ENSRNOG00000037566 RGD1560398_predicted | ||||
| rat | .(((((..(((...(((.((..(((.((((((...((((((.((((((......((.(((....))).))....))))))..)))))))))))))))....))...))).))).))))). | 0.690 -36.60 | |||
| rat | chromosome:12:43047665:43047784:1 | Same_strand|Intronic_non-coding|ENSRNOT00000056932|ENSRNOG00000037566 ## ENSRNOG00000037566|protein_coding|RGD1560398_predicted| |
sblock8169 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.278 | no | no | 0.50/0.61 | 18/24/0.60 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 1 1 1 4 | 0 0 0 0 | 1 1 1 3 | 0 0 0 0 | 0 10 26 20 | 10 6 -11 -2 | 5arm 5arm 5arm_loop_3arm 3arm_loop | 38 41 41 49 | nd nd nd nd | 0.29 0.33 0.32 0.35 | 4 5 4 4 | 10 | 5 | 0 | -5 |
| reads | miRBase family seed | ||||||
| seed | -------------------------------------CCGUUGU-------------------------------- | 4 | novel | ||||
| seed | --------------------------------------CGUUGUG------------------------------- | 2 | novel | ||||
| seed | ------------------------------------UCCGUUG--------------------------------- | 1 | novel | ||||
| seed | -----------CUUCCGU---------------------------------------------------------- | 1 | novel | ||||
| seed | -CUGGCAU-------------------------------------------------------------------- | 1 | novel | ||||
| seed | ---------------------------CCCAAUG------------------------------------------ | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T4S1 | |||
| ------------------------------------TCCGTTGTGGATCTGACATG-------------------- | 20 | - | - | - | 4 | - | |
| -------------------------------------CCGTTGTGGATCTGACATG-------------------- | 19 | 1 | - | 1 | - | - | |
| -----------------------------------ATCCGTTGTGGATCTGACATGCC------------------ | 23 | - | - | - | 1 | - | |
| ACTGGCATGGCCTTCCGTGTTCCT---------------------------------------------------- | 24 | - | - | - | - | 1 | |
| --------------------------CCCCAATGTATCCGTTGTG------------------------------- | 19 | - | 1 | - | - | - | |
| ----------CCTTCCGTGTTCCTACCC------------------------------------------------ | 18 | - | - | - | - | 1 | |
| rat | actggcatggccttccgtgttcctacccccaatgtaTCCGTTGTGGATCTGACATGccacctggagaaacctgcca | ||||||
| **************************************************************************** | |||||||
| rat | ..(((((.((.((((((((((.....((.(((((....))))).))....))))))......))))...))))))) | 0.550 -18.70 | |||||
| rat | chromosome:3:128260514:128260589:1 | intergenic |
novel_lenNOK_cloningOK_multiarm_DicerNOK_mirtron_randfoldOK (4 loci)
sblock11439 [novel_lenNOK_cloningOK_multiarm_DicerNOK_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.55/0.63 | 18/22/0.55 | 0.8 0.2 | 1.2 0.8 | 6 16 | 0 0 | 5 8 | 0 0 | 14 16 | 8 3 | 5arm 3arm | 2 2 | 36 0 | 0.10 0.00 | 2 0 | 22 | 8 | 0 | 1 |
| reads | miRBase family seed | |||||||||
| seed | -----------------------------------------------------GCCUUCU------------------------------ | 14 | novel | |||||||
| seed | ----------------GCAGGGA------------------------------------------------------------------- | 5 | novel | |||||||
| seed | -------------------------------------------------------CUUCUUG---------------------------- | 1 | novel | |||||||
| seed | ---------------AGCAGGG-------------------------------------------------------------------- | 1 | novel | |||||||
| seed | ------------------------------------------------------CCUUCUU----------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------------------CGCCTTCTTGTGTCCCTGCA------------------ | 20 | - | - | 1 | 2 | 1 | - | - | - | |
| ----------------------------------------------------CGCCTTCTTGTGTCCCTGCAG----------------- | 21 | - | 1 | - | - | - | - | 1 | 2 | |
| ----------------------------------------------------CGCCTTCTTGTGTCCCTGC------------------- | 19 | 1 | 1 | - | - | - | - | - | 1 | |
| ---------------AGCAGGGATACAGGACTG--------------------------------------------------------- | 18 | - | 1 | 1 | - | - | - | - | - | |
| ----------------------------------------------------CGCCTTCTTGTGTCCCTGCAGA---------------- | 22 | - | 1 | - | - | - | 1 | - | - | |
| ---------------AGCAGGGATACAGGACTGGG------------------------------------------------------- | 20 | - | 1 | - | - | - | - | - | - | |
| ---------------AGCAGGGATACAGGACTGG-------------------------------------------------------- | 19 | - | - | - | - | - | 1 | - | - | |
| ---------------AGCAGGGATACAGGACTGGGTA----------------------------------------------------- | 22 | 1 | - | - | - | - | - | - | - | |
| --------------CAGCAGGGATACAGGACTG--------------------------------------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------GCCTTCTTGTGTCCCTGCA------------------ | 19 | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------CGCCTTCTTGTGTCCCTG-------------------- | 18 | - | - | - | 1 | - | - | - | - | |
| ------------------------------------------------------CCTTCTTGTGTCCCTGCA------------------ | 18 | 1 | - | - | - | - | - | - | - | |
| rat | tcagctcctgctgaCAGCAGGGATACAGGACTGGGTAactgaagcagacgcaCGCCTTCTTGTGTCCCTGCAGAtggtagaaagcatgaa | |||||||||
| ****************************************************************************************** | ||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000034998 ENSRNOG00000024743 L3mbtl2 | |||||||||
| rat | ((((((.(((((....((((((((((((((..((((.......((....))..))))))))))))))))))....)))))..))).))). | 0.950 -36.40 | ||||||||
| rat | chromosome:7:120031197:120031286:1 | Same_strand|Intronic_coding|ENSRNOT00000034998|ENSRNOG00000024743 ## Same_strand|Boundary_coding|ENSRNOT00000034998|ENSRNOG00000024743 ## ENSRNOG00000024743|protein_coding|L3mbtl2|l(3)mbt-like 2 [Source:RefSeq_peptide;Acc:NP_001028867] |
sblock2769 [novel_lenNOK_cloningOK_multiarm_DicerNOK_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.70/0.79 | 19/23/0.64 | 0.0 0.0 | 0.0 1.1 | 1 10 | 0 0 | 1 2 | 0 0 | 25 27 | 7 5 | 5arm 3arm | 1 1 | 43 0 | 0.20 0.05 | 3 1 | 11 | 2 | -3 | 3 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------------UCCUGGU------------------------------------------ | 10 | novel | |
| seed | --------------------------GGAGGUG------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| -------------------------------------------------------------------CTCCTGGTCGCCCCACCCC------------------------------- | 19 | 3 | 1 | |
| -------------------------------------------------------------------CTCCTGGTCGCCCCACCCCA------------------------------ | 20 | 3 | - | |
| -------------------------------------------------------------------CTCCTGGTCGCCCCACCCCAG----------------------------- | 21 | 1 | 1 | |
| -------------------------------------------------------------------CTCCTGGTCGCCCCACCCCAGGA--------------------------- | 23 | - | 1 | |
| -------------------------TGGAGGTGATCGGGGGCCAG------------------------------------------------------------------------ | 20 | 1 | - | |
| rat | ttcccgcgtagagaacgggacttgcTGGAGGTGATCGGGGGCCAGgaacgagctgggactgactcgaCTCCTGGTCGCCCCACCCCAGGAaggtccccagtggctgcatatgcggga | |||
| ********************************************************************************************************************* | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000046668 ENSRNOG00000007957 Bzrap1 | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000010755 ENSRNOG00000007957 Bzrap1 | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000045158 ENSRNOG00000007957 Bzrap1 | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000055719 ENSRNOG00000007957 Bzrap1 | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000008727 ENSRNOG00000007957 Bzrap1 | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000055718 ENSRNOG00000007957 Bzrap1 | |||
| rat | .(((((((((.((.(((((((((.((((.((((...(((((((((((.((((..........))))..)))))))).)))))))))))..)))))))..))..))...))))))))) | 0.860 -61.40 | ||
| rat | chromosome:10:76056096:76056212:1 | Same_strand|Boundary_coding|ENSRNOT00000055719|ENSRNOG00000007957 ## Same_strand|Intronic_coding|ENSRNOT00000055718|ENSRNOG00000007957 ## Same_strand|Boundary_non-coding|ENSRNOT00000010949|ENSRNOG00000007957 ## ENSRNOG00000007957|protein_coding|Bzrap1|Peripheral-type benzodiazepine receptor-associated protein 1 (PRAX-1) (RIM-binding protein 1) (RIM-BP1). [Source:UniProtKB/Swiss-Prot;Acc:Q9JIR0] |
sblock7810 [novel_lenNOK_cloningOK_multiarm_DicerNOK_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.39/0.50 | 18/21/0.31 | 0.0 0.0 0.7 | 0.0 0.0 0.1 | 3 1 9 | 0 0 0 | 1 1 5 | 0 0 0 | 10 29 9 | 7 -15 3 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | 35 13 0 | 0.33 0.48 0.21 | 6 5 3 | 13 | 6 | 0 | 1 |
| reads | miRBase family seed | |||||||
| seed | ---------------------------------------------AUACCUU-------------------- | 6 | novel | |||||
| seed | -----------GGGGCAU------------------------------------------------------ | 3 | novel | |||||
| seed | --------------------------------------------AAUACCU--------------------- | 3 | novel | |||||
| seed | ------------------------------GGGUAAG----------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T2S2 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| --------------------------------------------AATACCTTTGTGTCCCTAG--------- | 19 | 2 | - | - | 1 | 1 | 1 | |
| ----------TGGGGCATAAAGGGACTT-------------------------------------------- | 18 | - | - | - | 3 | - | - | |
| -------------------------------------------CAATACCTTTGTGTCCCTAG--------- | 20 | 2 | 1 | - | - | - | - | |
| -----------------------------TGGGTAAGATATGCCAATACC---------------------- | 21 | - | - | 1 | - | - | - | |
| --------------------------------------------AATACCTTTGTGTCCCTA---------- | 18 | - | 1 | - | - | - | - | |
| rat | agatgttctcTGGGGCATAAAGGGACTTtTGGGTAAGATATGCCAATACCTTTGTGTCCCTAGggccgcgtt | |||||||
| ************************************************************************ | ||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>> | ENSRNOT00000020695 ENSRNOG00000036720 NP_001102682.1 | |||||||
| rat | .(((((.((((((((((((((((........((((.....))))....)))))))).))))))))..))))) | 1.000 -29.10 | ||||||
| rat | chromosome:3:170709236:170709307:-1 | Same_strand|Intronic_coding|ENSRNOT00000020695|ENSRNOG00000036720 ## ENSRNOG00000036720|protein_coding|NP_001102682.1|similar to Uridine-cytidine kinase 1-like 1 (predicted) (RGD1565465_predicted), mRNA [Source:RefSeq_dna;Acc:NM_001109212] |
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