other hairpins
novel_lenNOK_cloningOK_multiarm_DicerNOK_mirtron_randfoldOK (4 loci)
sblock7850 [novel_lenNOK_cloningOK_multiarm_DicerNOK_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.52/0.56 | 18/21/0.64 | 0.0 0.0 | 0.0 0.6 | 2 9 | 0 0 | 1 4 | 0 0 | 31 15 | 10 5 | 5arm 3arm | 1 1 | 46 0 | 0.28 0.14 | 4 2 | 11 | 5 | -5 | 0 |
| reads | miRBase family seed | ||||||
| seed | ----------------------------------------------------------------------------GCUGCCU---------------------------- | 9 | novel | ||||
| seed | --------------------------------CUGUGGU------------------------------------------------------------------------ | 2 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T4S2 | T5S1 | T5S2 | |||
| ---------------------------------------------------------------------------TGCTGCCTCTCTCTCTACAG---------------- | 20 | 2 | 1 | 1 | 1 | - | |
| -------------------------------TCTGTGGTTGTAGTGGGG-------------------------------------------------------------- | 18 | - | - | - | - | 2 | |
| ---------------------------------------------------------------------------TGCTGCCTCTCTCTCTACAGA--------------- | 21 | - | 2 | - | - | - | |
| ---------------------------------------------------------------------------TGCTGCCTCTCTCTCTACA----------------- | 19 | - | 1 | - | - | - | |
| ---------------------------------------------------------------------------TGCTGCCTCTCTCTCTAC------------------ | 18 | - | - | 1 | - | - | |
| rat | ccttggtggtcttcctggggcctcaggcatcTCTGTGGTTGTAGTGGGGtagcagggtcctcaggtctaagagccTGCTGCCTCTCTCTCTACAGAaggcccgccattgag | ||||||
| *************************************************************************************************************** | |||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000031511 ENSRNOG00000022552 NP_001102049.1 | ||||||
| rat | .((..(((((.......((((((........(((((((....((.(((((((((((.((...........)).))))))))))).))..))))))))))))))))))..)) | 0.930 -51.71 | |||||
| rat | chromosome:3:11729780:11729890:1 | Same_strand|Boundary_coding|ENSRNOT00000031511|ENSRNOG00000022552 ## Same_strand|Intronic_coding|ENSRNOT00000031511|ENSRNOG00000022552 ## ENSRNOG00000022552|protein_coding|NP_001102049.1|SH2 domain containing 3C [Source:RefSeq_peptide;Acc:NP_001102049] |
novel_lenNOK_cloningOK_multiarm_DicerOK_loopOverlap (4 loci)
block713258 [novel_lenNOK_cloningOK_multiarm_DicerOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.440 | no | no | 0.35/0.53 | 19/25/0.58 | 0.0 0.0 0.0 1.0 0.0 0.0 | 0.0 0.0 0.0 0.0 1.4 0.0 | 6 1 1 3 5 6 | 0 0 0 0 0 0 | 2 1 1 1 2 1 | 0 0 0 0 0 0 | 13 23 28 36 21 14 | 9 1 -4 -14 -3 10 | 5arm 5arm 5arm_loop_3arm 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 1 1 1 | nd nd nd nd nd nd | 0.27 0.40 0.50 0.41 0.26 0.37 | 2 3 4 4 2 4 | 24 | 3 | 3 | 3 |
| reads | miRBase family seed | ||||
| seed | --------------AGACCAC---------------------------------------------------------------------- | 8 | novel | ||
| seed | -----------------------------------------------------------GCCCAGU------------------------- | 6 | novel | ||
| seed | ----------------------------------------------ACAGUUG-------------------------------------- | 5 | novel | ||
| seed | -------------------------------------GCUUCCU----------------------------------------------- | 2 | novel | ||
| seed | -----------------------------AUGUCAA------------------------------------------------------- | 1 | novel | ||
| seed | ------------------------GUUGUAU------------------------------------------------------------ | 1 | novel | ||
| seed | ----------------------------------------UCCUGUA-------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T5S1 | T5S2 | |||
| -------------TAGACCACATTGTTGTATGTCA-------------------------------------------------------- | 22 | - | 6 | - | |
| ----------------------------------------------------------TGCCCAGTGTCTTCTGCTA-------------- | 19 | - | 6 | - | |
| ---------------------------------------------TACAGTTGCTTGATGCCCAGTGTC---------------------- | 24 | - | 2 | - | |
| ---------------------------------------------TACAGTTGCTTGATGCCCAGTGTCT--------------------- | 25 | - | 2 | - | |
| -------------TAGACCACATTGTTGTATGTCAA------------------------------------------------------- | 23 | - | 1 | 1 | |
| ------------------------------------TGCTTCCTGTACAGTTGCTTGA--------------------------------- | 22 | - | 2 | - | |
| ----------------------------TATGTCAATGCTTCCTGTAC------------------------------------------- | 20 | - | 1 | - | |
| ---------------------------------------------TACAGTTGCTTGATGCCCA--------------------------- | 19 | 1 | - | - | |
| -----------------------TGTTGTATGTCAATGCTTCC------------------------------------------------ | 20 | - | 1 | - | |
| ---------------------------------------TTCCTGTACAGTTGCTTGA--------------------------------- | 19 | - | 1 | - | |
| rat | tccgagaggccctTAGACCACATTGTTGTATGTCAaTGCTTCCTGTACAGTTGCTTGATGCCCAGTGTCTTCTGCTAagcttccacaagga | ||||
| ******************************************************************************************* | |||||
| rat | (((..(((((...((((..((((((..((..(((((.((...((....))..))))))))).))))))..))))....))))).....))) | 0.970 -20.20 | |||
| rat | chromosome:18:63579785:63579875:-1 | intergenic |
block1060655 [novel_lenNOK_cloningOK_multiarm_DicerOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.870 | no | no | 0.35/0.63 | 19/26/0.35 | 3.5 1.0 0.5 0.0 1.0 | 2.0 2.3 2.5 0.0 2.4 | 2 3 2 8 8 | 0 0 0 0 0 | 2 1 1 5 3 | 0 0 0 0 0 | 10 25 40 18 2 | 3 -9 -21 -1 8 | 5arm 5arm_loop_3arm 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.35 0.40 0.42 0.21 0.42 | 4 4 7 3 5 | 26 | 6 | 1 | 1 |
| reads | miRBase family seed | |||||||
| seed | --------------------------------------------------GAAGCAC----------------------------- | 11 | novel | |||||
| seed | -----------------------------------------------------------GCACCAG-------------------- | 6 | novel | |||||
| seed | --------------------------UUGUACA----------------------------------------------------- | 1 | novel | |||||
| seed | ----------------------------GUACACA--------------------------------------------------- | 1 | novel | |||||
| seed | -----------AGUUGCU-------------------------------------------------------------------- | 1 | novel | |||||
| seed | -----------------------------------------UCUGCUC-------------------------------------- | 1 | novel | |||||
| seed | ------------------------------------------------------------------AAUCUGC------------- | 1 | novel | |||||
| seed | ------------------------------------------CUGCUCU------------------------------------- | 1 | novel | |||||
| seed | ------------------------------------------------------------CACCAGA------------------- | 1 | novel | |||||
| seed | ------------------AGAUCAA------------------------------------------------------------- | 1 | novel | |||||
| seed | ---------------------------UGUACAC---------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T2S1 | T2S2 | T4S1 | T4S2 | T5S1 | |||
| -------------------------------------------------TGAAGCACCTGCACCAGAA------------------ | 19 | - | - | - | - | 2 | 6 | |
| ----------------------------------------------------------TGCACCAGAATCTGCCCCC--------- | 19 | - | 1 | - | - | - | 3 | |
| -----------------TAGATCAATTTGTACACACGGTC---------------------------------------------- | 23 | 1 | - | - | - | - | - | |
| -------------------------TTTGTACACACGGTCTTCTG----------------------------------------- | 20 | - | - | - | - | - | 1 | |
| ----------TAGTTGCTAGATCAATTTGTACACAC-------------------------------------------------- | 26 | - | - | - | - | - | 1 | |
| -------------------------------------------------TGAAGCACCTGCACCAGAATCT--------------- | 22 | 1 | - | - | - | - | - | |
| -------------------------------------------------TGAAGCACCTGCACCAGAATCTG-------------- | 23 | - | 1 | - | - | - | - | |
| --------------------------TTGTACACACGGTCTTCTG----------------------------------------- | 19 | - | - | - | - | - | 1 | |
| -------------------------------------------------TGAAGCACCTGCACCAGAATC---------------- | 21 | - | - | 1 | - | - | - | |
| ---------------------------TGTACACACGGTCTTCTGCTCTTGA---------------------------------- | 25 | - | - | - | - | - | 1 | |
| ----------------------------------------------------------TGCACCAGAATCTGCCCCCGAAA----- | 23 | - | - | - | 1 | - | - | |
| -----------------------------------------------------------GCACCAGAATCTGCCCCCGAAAG---- | 23 | - | - | - | - | - | 1 | |
| -----------------------------------------------------------------GAATCTGCCCCCGAAAGCC-- | 19 | - | - | - | - | - | 1 | |
| ----------------------------------------------------------TGCACCAGAATCTGCCCCCGAA------ | 22 | - | - | - | - | - | 1 | |
| -----------------------------------------TCTGCTCTTGAAGCACCTGCACC---------------------- | 23 | - | - | - | - | - | 1 | |
| ----------------------------------------TTCTGCTCTTGAAGCACCT--------------------------- | 19 | - | - | - | - | - | 1 | |
| rat | caggagaagttagttgctagatcaatttgtacacacggtcttctgctctTGAAGCACCTGCACCAGAATCTGCCCCCgaaagcctg | |||||||
| ************************************************************************************** | ||||||||
| rat | ((((...........((.((((...((((....((.(((((((.......)))).)))))...)))))))))).........)))) | 0.730 -14.75 | ||||||
| rat | chromosome:20:5512716:5512801:-1 | intergenic |
sblock11832 [novel_lenNOK_cloningOK_multiarm_DicerOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.025 | no | no | 0.47/0.53 | 18/25/0.21 | 1.0 0.0 0.0 0.5 0.0 0.0 | 1.5 1.7 0.0 0.5 0.0 0.0 | 2 3 1 2 1 9 | 0 0 0 0 0 0 | 2 1 1 1 1 1 | 0 0 0 0 0 0 | 8 45 37 26 15 8 | 26 -14 -5 9 21 28 | 5arm 5arm_loop_3arm 3arm_loop 3arm 3arm 3arm | 1 1 1 1 1 1 | nd nd nd nd nd nd | 0.25 0.44 0.48 0.35 0.26 0.21 | 3 7 4 4 3 3 | 19 | 2 | 3 | 1 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------------------------------------CUGUUCC------------------- | 9 | novel | |
| seed | ----------------------------------------------GUCAUGG----------------------------------------------------------------- | 3 | novel | |
| seed | -----------ACUCGGG---------------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | -------------------------------------------------------------------------GUCCCUU-------------------------------------- | 1 | novel | |
| seed | ----------------------------------------------------------------------------------------------GUUCCAA----------------- | 1 | novel | |
| seed | ---------UUACUCG------------------------------------------------------------------------------------------------------ | 1 | novel | |
| seed | -------------------------------------------------------------------------------------GCUUCUG-------------------------- | 1 | novel | |
| seed | -----------------------------------------------------------GCUUGUA---------------------------------------------------- | 1 | novel | |
| seed | --------------------------------------------------------------------------UCCCUUC------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T5S1 | |||
| -------------------------------------------------------------------------------------------GCTGTTCCAAAGGATGGGA-------- | 19 | - | 9 | |
| ---------------------------------------------TGTCATGGTACCCTGCTTGTACCTC------------------------------------------------ | 25 | - | 2 | |
| ---------------------------------------------------------------------------------------------TGTTCCAAAGGATGGGATG------ | 19 | - | 1 | |
| ------------------------------------------------------------------------------------TGCTTCTGCTGTTCCAAAG--------------- | 19 | - | 1 | |
| ---------------------------------------------TGTCATGGTACCCTGCTTGT----------------------------------------------------- | 20 | - | 1 | |
| --------TTTACTCGGGATAGACGGT------------------------------------------------------------------------------------------- | 19 | - | 1 | |
| ------------------------------------------------------------------------TGTCCCTTCAGATGCTTCTG-------------------------- | 20 | - | 1 | |
| ----------TACTCGGGATAGACGGTAGA---------------------------------------------------------------------------------------- | 20 | 1 | - | |
| -------------------------------------------------------------------------GTCCCTTCAGATGCTTCT--------------------------- | 18 | - | 1 | |
| ----------------------------------------------------------TGCTTGTACCTCGATGTCCCTTC------------------------------------- | 23 | - | 1 | |
| rat | tcattcattttactcgggatagacggtagaaagttacctgggttttgtcatggtaccctgcttgtacctcgatgtcccttcagatgcttctGCTGTTCCAAAGGATGGGAtgcatgag | |||
| ********************************************************************************************************************** | ||||
| rat | ((((.(((((((.((.(((...(((((((((.(((....(((...((((..(((((.......)))))..)))).)))....)))..))))))))))))...)).))))))).)))). | 1.000 -36.20 | ||
| rat | chromosome:8:72082797:72082914:-1 | intergenic |
sblock7181 [novel_lenNOK_cloningOK_multiarm_DicerOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.205 | no | no | 0.42/0.55 | 18/21/0.40 | 0.0 0.0 1.0 0.0 | 0.0 0.0 0.0 1.0 | 1 4 2 3 | 0 0 0 0 | 1 3 2 2 | 0 0 0 0 | 12 27 20 6 | 6 -8 -6 8 | 5arm 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 1 | nd nd nd nd | 0.35 0.68 0.58 0.28 | 3 7 6 3 | 10 | 4 | 2 | 3 |
| reads | miRBase family seed | |||||
| seed | ----------------------------GACCAAC--------------------------------------------- | 4 | novel | |||
| seed | ------------------------------------------------------CACGAGC------------------- | 3 | novel | |||
| seed | -------------CACCAGA------------------------------------------------------------ | 1 | novel | |||
| seed | ------------------------------------------AAAGCCU------------------------------- | 1 | novel | |||
| seed | ----------------------------------------CUAAAGC--------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T4S1 | T4S2 | T5S1 | |||
| ---------------------------TGACCAACAGCCTCTAAAG---------------------------------- | 19 | 1 | - | 1 | 2 | |
| -----------------------------------------------------TCACGAGCCTTCTGGAAAACT------ | 21 | 2 | - | - | - | |
| ------------TCACCAGAGAGACTCTGACC------------------------------------------------ | 20 | - | - | - | 1 | |
| ---------------------------------------TCTAAAGCCTATCTTCACGAG-------------------- | 21 | - | 1 | - | - | |
| -----------------------------------------TAAAGCCTATCTTCACGAG-------------------- | 19 | - | - | - | 1 | |
| -----------------------------------------------------TCACGAGCCTTCTGGAAA--------- | 18 | - | - | - | 1 | |
| rat | tctgcccagtccTCACCAGAGAGACTCTGACCAACAGCCTCTAAAGCCTATCTTCACGAGCCTTCTGGAAAACTacccag | |||||
| ******************************************************************************** | ||||||
| rat | .(((...(((.....(((((.((.((((((......((.......))......))).))).)))))))...)))...))) | 0.580 -13.00 | ||||
| rat | chromosome:20:5551355:5551434:1 | intergenic |
novel_lenNOK_cloningOK_shortStem_loopOverlap_randfoldOK (4 loci)
block19047 [novel_lenNOK_cloningOK_shortStem_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.63/0.67 | 18/19/0.00 | 0.0 | 0.6 | 18 | 0 | 8 | 0 | 1 | -1 | 5arm_loop | 1 | nd | 0.22 | 2 | 18 | 8 | na | na |
| reads | miRBase family seed | |||||||||
| seed | --GCAGCAU---------------------------------- | 18 | miR-103/107 | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S2 | T5S2 | |||
| -AGCAGCATGTGCCAGGGCT----------------------- | 19 | 1 | 3 | - | 2 | - | 1 | 2 | 1 | |
| -AGCAGCATGTGCCAGGGC------------------------ | 18 | - | 3 | 3 | - | 1 | - | 1 | - | |
| rat | gAGCAGCATGTGCCAGGGCTggggacgtcctgggcatgagctc | |||||||||
| ******************************************* | ||||||||||
| ----------------------------------------------------- | ENSRNOT00000003447 ENSRNOG00000002488 Galnt10 | |||||||||
| rat | ((((..(((((.(((((((.......)))))))))))).)))) | 1.000 -21.60 | ||||||||
| rat | chromosome:10:43315576:43315618:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000003447|ENSRNOG00000002488 ## ENSRNOG00000002488|protein_coding|Galnt10|Polypeptide N-acetylgalactosaminyltransferase 10 (EC 2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase 10) (UDP- GalNAc:polypeptide N-acetylgalactosaminyltransferase 10) (Polypeptide GalNAc transferase 10) (GalNAc-T10) (pp-GaNTase 10). [Source:UniProtKB/Swiss-Prot;Acc:Q925R7] |
block941468 [novel_lenNOK_cloningOK_shortStem_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.44/0.47 | 18/19/0.00 | 0.0 | 0.0 | 42 | 0 | 4 | 0 | 1 | -4 | 3arm_loop | 1 | nd | 0.22 | 3 | 46 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | --------------------CAUGCAG----------- | 44 | novel | |||
| seed | -------------------ACAUGCA------------ | 2 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T3S1 | T5S1 | |||
| -------------------ACATGCAGCAGTTGTTTG- | 18 | 25 | 17 | 1 | 1 | |
| ------------------CACATGCAGCAGTTGTTT-- | 18 | - | 1 | - | - | |
| ------------------CACATGCAGCAGTTGTTTG- | 19 | 1 | - | - | - | |
| rat | gctgaataactgcaaggccACATGCAGCAGTTGTTTGc | |||||
| ************************************** | ||||||
| ------------------------------------------------ | ENSRNOT00000019319 ENSRNOG00000014290 Grm1 | |||||
| ------------------------------------------------ | ENSRNOT00000044325 ENSRNOG00000014290 Grm1 | |||||
| rat | ((.((((((((((...((.....)).)))))))))))) | 1.000 -13.30 | ||||
| rat | chromosome:1:5731576:5731613:1 | Opposite_strand|Intronic_coding|ENSRNOT00000019319|ENSRNOG00000014290 ## ENSRNOG00000014290|protein_coding|Grm1|Metabotropic glutamate receptor 1 precursor (mGluR1). [Source:UniProtKB/Swiss-Prot;Acc:P23385] |
block1125306 [novel_lenNOK_cloningOK_shortStem_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.17/0.21 | 18/20/0.50 | 0.0 | 1.0 | 12 | 0 | 2 | 0 | 0 | -4 | 3arm_loop | 1 | nd | 0.26 | 3 | 14 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------UAAAGCU------------ | 14 | miR-9* | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| -------------------------TTAAAGCTAGATAAAAATGA | 20 | 6 | 1 | |
| -------------------------TTAAAGCTAGATAAAAAT-- | 18 | 4 | 2 | |
| -------------------------TTAAAGCTAGATAAAAATG- | 19 | 1 | - | |
| rat | tcatttttataaagttcaaaactaaTTAAAGCTAGATAAAAATGA | |||
| ********************************************* | ||||
| ------------------------------------------------------- | ENSRNOT00000062017 ENSRNOG00000040297 RGD1306062_predicted | |||
| rat | ((((((((((..((((.............))))..)))))))))) | 1.000 -8.02 | ||
| rat | chromosome:2:3298430:3298474:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000062012|ENSRNOG00000040297 ## Opposite_strand|Intronic_coding|ENSRNOT00000062017|ENSRNOG00000040297 ## ENSRNOG00000040297|protein_coding|RGD1306062_predicted| |
block2309988 [novel_lenNOK_cloningOK_shortStem_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.61/0.61 | 18/18/0.00 | 0.0 | 0.0 | 13 | 0 | 6 | 0 | 2 | -3 | 3arm_loop | 1 | nd | 0.22 | 2 | 15 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | ----------------------CCAGAUU------------ | 15 | novel | |||||
| len | cloning frequencies | |||||||
| T1S2 | T2S1 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| ---------------------ACCAGATTGGGTCCAGCC-- | 18 | 3 | 2 | 1 | 4 | 1 | 4 | |
| rat | taggaaatggactagtttaaaACCAGATTGGGTCCAGCCtg | |||||||
| ***************************************** | ||||||||
| rat | ((((...(((((((((((......))))))).)))).)))) | 1.000 -12.80 | ||||||
| rat | chromosome:8:55979972:55980012:-1 | intergenic |
novel_lenNOK_gcHIGH_multiarm_DicerNOK_loopOverlap_nonpairedHIGH (4 loci)
sblock12027 [novel_lenNOK_gcHIGH_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.384 | no | no | 0.78/1.00 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 2 14 | 2 -9 | 5arm 3arm_loop | 1 1 | nd nd | 0.33 0.61 | 2 8 | 2 | 2 | 0 | -11 |
| reads | miRBase family seed | |||
| seed | -------------------------------------CCUUCCC------------------------ | 1 | novel | |
| seed | ---CCGCCCC---------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T3S2 | |||
| --CCCGCCCCGGGGCCCCGC------------------------------------------------ | 18 | 1 | - | |
| ------------------------------------GCCTTCCCCGCGCTAGGC-------------- | 18 | - | 1 | |
| rat | cgCCCGCCCCGGGGCCCCGCgctcacctcccgcccaGCCTTCCCCGCGCTAGGCgccgaggctccgcg | |||
| ******************************************************************** | ||||
| rat | (((..(((.(((.(((..((((.......................))))..))).))).)))...))) | 0.450 -26.00 | ||
| rat | chromosome:8:66986953:66987020:1 | intergenic ## {Repeats: dust 66986851 66986869 0 class=dust,trf 16 34 0 class=trf,GC_rich 4 22 1 class=Low_complexity,dust 66986822 66986835 0 class=dust,GC_rich 1 24 1 class=Low_complexity} |
| Back to summary page | other hairpins: | Page 1 | Jump 10 pages back | Previous page | Page 31100 | Next page | Jump 10 pages forward | Page 31204 |
©2008 InteRNA Genomics B.V.