other hairpins
novel_lenNOK_loopOverlap_mirtron_randfoldOK_nonpairedHIGH_bulgeHIGH (4 loci)
block2075908 [novel_lenNOK_loopOverlap_mirtron_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.56/0.56 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 36 | -4 | 5arm_loop | 1 | 4 | 0.44 | 5 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------AAAGGUA------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| ------------------------------------CAAAGGTAGGGTAGTGCC-------------------------------------------- | 18 | 1 | |
| rat | ctgcactgaaagccagtggtgtgcaggcacaaatggCAAAGGTAGGGTAGTGCCcacccctgccctgccccacctgcttctccaggggttacagtcag | ||
| ************************************************************************************************** | |||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000048848 ENSRNOG00000003076 Rbms2 | ||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000004137 ENSRNOG00000003076 Rbms2 | ||
| rat | (((.((((..((((..(((...(((((......(((....((((((((((.........))))))))))))))))))....)))..)))).))))))) | 0.500 -39.70 |
| rat | chromosome:7:1438512:1438609:-1 | Same_strand|Boundary_coding|ENSRNOT00000004137|ENSRNOG00000003076 ## ENSRNOG00000003076|protein_coding|Rbms2|RNA binding motif, single stranded interacting protein 2 [Source:RefSeq_peptide;Acc:NP_001020574] |
novel_lenNOK_mirtron_randfoldOK_bulgeHIGH (4 loci)
block213305 [novel_lenNOK_mirtron_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.67/0.67 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 30 26 | 3 7 | 3arm 3arm | 3 3 | 7 3 | 0.28 0.33 | 4 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------UGCCCUG------------------------------------ | 1 | miR-874 | |
| seed | --------------------------------------------------CUCCUGC---------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T3S1 | |||
| -------------------------------------------------TCTCCTGCCCTGTCCCAC------------------------------ | 18 | - | 1 | |
| -----------------------------------------------------CTGCCCTGTCCCACTCTG-------------------------- | 18 | 1 | - | |
| rat | gtggcactctcctccgagccagagtgggaagtagccagggacacctgtcTCTCCTGCCCTGTCCCACTCTGcaggccagtgaggagaaggtgaagca | |||
| ************************************************************************************************* | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000001479 ENSRNOG00000001117 | |||
| rat | ((..((((((((((...((((((((((((.((((..((((((....)))))).))))....)))))))))...)))....)))))))..)))..)). | 1.000 -46.30 | ||
| rat | chromosome:12:12067850:12067946:1 | Same_strand|Intronic_coding|ENSRNOT00000001479|ENSRNOG00000001117 ## ENSRNOG00000001117|protein_coding|| |
block584998 [novel_lenNOK_mirtron_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.33/0.33 | 18/18/0.00 | 0.0 | 0.0 | 3 | 0 | 1 | 0 | 20 | 15 | 5arm | 1 | 0 | 0.22 | 4 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------GUAAUUU------------------------------------------------------------------------------------ | 3 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------------GGTAATTTGGAAGTTTAG-------------------------------------------------------------------------- | 18 | 3 | |
| rat | ggggatattgacagtgaaaaGGTAATTTGGAAGTTTAGataggttcttttgtagtagtctatactaaagatttttagatttccagccttttgtgtttagctgtttagtcttc | ||
| **************************************************************************************************************** | |||
| >>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000020832 ENSRNOG00000015501 LOC684666 | ||
| rat | ((((((...((((((.(((((((....((((((((((((.....(((((.(((........))).)))))..))))))))))))))))))).......))))))..)))))) | 1.000 -31.80 |
| rat | chromosome:16:70706510:70706621:1 | Same_strand|Boundary_coding|ENSRNOT00000020832|ENSRNOG00000015501 ## ENSRNOG00000015501|protein_coding|LOC684666| |
block2162294 [novel_lenNOK_mirtron_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.68/0.68 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 19 | 17 | 3arm | 1 | 2 | 0.26 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------UUUCCCC------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T2S1 | |||
| -----------------------------------------------------------------------CTTTCCCCACCCGTCCCCT------------------- | 19 | 1 | |
| rat | ggaggctgagcagcctagggaggtgggggaggagagtcaggcagtatgaaatgggctcttgattgcacctcCTTTCCCCACCCGTCCCCTaggtatgccctggcctctc | ||
| ************************************************************************************************************* | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000015374 ENSRNOG00000011404 Chkb | ||
| rat | ((((((((.(((((((((((.((((((((((((((((((((.(((.........))))))))))....)))))).)))))))....)))))))).)))..)))))))). | 1.000 -58.00 |
| rat | chromosome:7:127747250:127747358:-1 | Same_strand|Intronic_coding|ENSRNOT00000015374|ENSRNOG00000011404 ## ENSRNOG00000011404|protein_coding|Chkb|Choline/ethanolamine kinase [Includes: Choline kinase beta (EC 2.7.1.32) (CK); Ethanolamine kinase (EC 2.7.1.82) (EK)]. [Source:UniProtKB/Swiss-Prot;Acc:O54783] |
block2355792 [novel_lenNOK_mirtron_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.62/0.63 | 19/21/0.67 | 0.0 | 0.7 | 3 | 0 | 1 | 0 | 19 | 2 | 3arm | 1 | 1 | 0.26 | 4 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------UGCCCUA-------------------------------- | 3 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| ----------------------------------------------------CTGCCCTAGGGTCTCTTCCCA------------------- | 21 | 2 | |
| ----------------------------------------------------CTGCCCTAGGGTCTCTTCC--------------------- | 19 | 1 | |
| rat | atcttggataaggaaggtatgggaagggtctttgaaaaggcctccgtcatggCTGCCCTAGGGTCTCTTCCCAggactatgaagttcaggat | ||
| ******************************************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000050344 ENSRNOG00000033378 A2VCX0_RAT | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000043825 ENSRNOG00000033378 A2VCX0_RAT | ||
| rat | (((((((((......(((.(((((((((.(((((....((((........))))....))))).)))))))))..))).....))))))))) | 1.000 -35.10 |
| rat | chromosome:8:113336710:113336801:-1 | Same_strand|Intronic_coding|ENSRNOT00000043825|ENSRNOG00000033378 ## ENSRNOG00000033378|protein_coding|A2VCX0_RAT|Putative uncharacterized protein (Fragment). [Source:UniProtKB/TrEMBL;Acc:A2VCX0] |
novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_bulgeHIGH (4 loci)
sblock1334 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.784 | no | no | 0.45/0.55 | 19/24/0.50 | 0.0 0.0 3.0 | 0.0 0.0 1.0 | 4 1 2 | 0 0 0 | 1 1 1 | 0 0 0 | 30 32 14 | 8 0 14 | 5arm 3arm 3arm | 44 44 44 | nd nd nd | 0.32 0.32 0.29 | 4 4 4 | 8 | 2 | -5 | -6 |
| reads | miRBase family seed | |||
| seed | -------------------------------GAGCACA---------------------------------------------------------------------------------- | 4 | novel | |
| seed | -------------------------------------------------------------------GUACCUG---------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------------------------------------------CCUUCUG-------------------------------- | 1 | novel | |
| seed | ---------------------------------------------------------------------------------------GCAUGUU-------------------------- | 1 | novel | |
| seed | -----------------------------AUGAGCA------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ------------------------------TGAGCACAGAGCAAACTGG----------------------------------------------------------------------- | 19 | - | 4 | |
| --------------------------------------------------------------------------------------TGCATGTTCTCTGGACGATC-------------- | 20 | - | 1 | |
| ----------------------------AATGAGCACAGAGCAAACTG------------------------------------------------------------------------ | 20 | - | 1 | |
| ------------------------------------------------------------------TGTACCTGGGTTGTGCCTTCTG-------------------------------- | 22 | 1 | - | |
| --------------------------------------------------------------------------------GCCTTCTGCATGTTCTCTGGACGA---------------- | 24 | - | 1 | |
| rat | gggaactggaaaacagagccagaggaagaaTGAGCACAGAGCAAACTGGgatggacaaagcacaaatgtacctgggttgtgccttctgcatgttctctggacgatcgccttgtgcctcct | |||
| ************************************************************************************************************************ | ||||
| rat | ((((...((...(((((.((((((((...(((....(((((((..(((((....(((.........))).)))))....)))..))))))).))))))))....))....))).)))))) | 0.580 -28.80 | ||
| rat | chromosome:1:47967935:47968054:1 | intergenic |
sblock913 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.664 | no | no | 0.27/0.53 | 19/22/0.50 | 1.5 0.0 0.0 0.0 | 2.5 0.0 0.0 0.0 | 2 1 2 1 | 0 0 0 0 | 2 1 1 1 | 0 0 0 0 | 13 28 9 0 | 15 9 31 40 | 5arm 3arm 3arm 3arm | 12 12 13 13 | nd nd nd nd | 0.30 0.41 0.32 0.44 | 4 4 2 5 | 6 | 5 | 15 | 11 |
| reads | miRBase family seed | ||||||
| seed | -----------------------------------------------------------------------------------------CUUUUCU-------------------- | 2 | novel | ||||
| seed | --------------------------------------------------------------------------------------------------UAGCAAC----------- | 1 | novel | ||||
| seed | --------------GAAGAUA----------------------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | -----------------GAUAGAU-------------------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | -------------------------------------------------------------------CACUCAG------------------------------------------ | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S2 | T2S2 | T3S2 | T5S1 | T5S2 | |||
| ----------------------------------------------------------------------------------------TCTTTTCTTCTAGCAACTG--------- | 19 | - | - | - | - | 2 | |
| ----------------AGATAGATTTATGACCTTAGTT------------------------------------------------------------------------------ | 22 | - | - | 1 | - | - | |
| ------------------------------------------------------------------ACACTCAGCATAAGAAACTACA---------------------------- | 22 | - | - | - | 1 | - | |
| -------------------------------------------------------------------------------------------------CTAGCAACTGTGCATACCG | 19 | 1 | - | - | - | - | |
| -------------GGAAGATAGATTTATGACCT----------------------------------------------------------------------------------- | 20 | - | 1 | - | - | - | |
| rat | ggtgagaagcttgGGAAGATAGATTTATGACCTTAGTTagggacttggccatatacctatgggaagACACTCAGCATAAGAAACTACATCTTTTCTTCTAGCAACTGTGCATACCG | ||||||
| ******************************************************************************************************************** | |||||||
| rat | ((((((..(((..((((((.((((.((....(((((((.((..(((..(((((....))))).)))...)).))).))))....)).))))..)))))))))..)).....)))). | 0.560 -23.30 | |||||
| rat | chromosome:1:202985454:202985569:-1 | intergenic |
sblock918 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.664 | no | no | 0.27/0.53 | 19/22/0.50 | 1.5 0.0 0.0 0.0 | 2.5 0.0 0.0 0.0 | 2 1 2 1 | 0 0 0 0 | 2 1 1 1 | 0 0 0 0 | 13 28 9 0 | 15 9 31 40 | 5arm 3arm 3arm 3arm | 12 12 13 13 | nd nd nd nd | 0.30 0.41 0.32 0.44 | 4 4 2 5 | 6 | 5 | 15 | 11 |
| reads | miRBase family seed | ||||||
| seed | -----------------------------------------------------------------------------------------CUUUUCU-------------------- | 2 | novel | ||||
| seed | --------------------------------------------------------------------------------------------------UAGCAAC----------- | 1 | novel | ||||
| seed | --------------GAAGAUA----------------------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | -----------------GAUAGAU-------------------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | -------------------------------------------------------------------CACUCAG------------------------------------------ | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S2 | T2S2 | T3S2 | T5S1 | T5S2 | |||
| ----------------------------------------------------------------------------------------TCTTTTCTTCTAGCAACTG--------- | 19 | - | - | - | - | 2 | |
| ----------------AGATAGATTTATGACCTTAGTT------------------------------------------------------------------------------ | 22 | - | - | 1 | - | - | |
| ------------------------------------------------------------------ACACTCAGCATAAGAAACTACA---------------------------- | 22 | - | - | - | 1 | - | |
| -------------------------------------------------------------------------------------------------CTAGCAACTGTGCATACCG | 19 | 1 | - | - | - | - | |
| -------------GGAAGATAGATTTATGACCT----------------------------------------------------------------------------------- | 20 | - | 1 | - | - | - | |
| rat | ggtgagaagcttgGGAAGATAGATTTATGACCTTAGTTagggacttggccatatacctatgggaagACACTCAGCATAAGAAACTACATCTTTTCTTCTAGCAACTGTGCATACCG | ||||||
| ******************************************************************************************************************** | |||||||
| rat | ((((((..(((..((((((.((((.((....(((((((.((..(((..(((((....))))).)))...)).))).))))....)).))))..)))))))))..)).....)))). | 0.560 -23.30 | |||||
| rat | chromosome:1:203002042:203002157:-1 | intergenic |
sblock941 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.417 | no | no | 0.27/0.53 | 19/22/0.50 | 1.5 0.0 0.0 0.0 | 2.5 0.0 0.0 0.0 | 2 1 2 1 | 0 0 0 0 | 2 1 1 1 | 0 0 0 0 | 13 28 9 0 | 15 9 31 40 | 5arm 3arm 3arm 3arm | 12 12 13 13 | nd nd nd nd | 0.30 0.41 0.37 0.44 | 4 4 5 5 | 6 | 5 | 15 | 11 |
| reads | miRBase family seed | ||||||
| seed | -----------------------------------------------------------------------------------------CUUUUCU-------------------- | 2 | novel | ||||
| seed | --------------------------------------------------------------------------------------------------UAGCAAC----------- | 1 | novel | ||||
| seed | --------------GAAGAUA----------------------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | -----------------GAUAGAU-------------------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | -------------------------------------------------------------------CACUCAG------------------------------------------ | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S2 | T2S2 | T3S2 | T5S1 | T5S2 | |||
| ----------------------------------------------------------------------------------------TCTTTTCTTCTAGCAACTG--------- | 19 | - | - | - | - | 2 | |
| ----------------AGATAGATTTATGACCTTAGTT------------------------------------------------------------------------------ | 22 | - | - | 1 | - | - | |
| ------------------------------------------------------------------ACACTCAGCATAAGAAACTACA---------------------------- | 22 | - | - | - | 1 | - | |
| -------------------------------------------------------------------------------------------------CTAGCAACTGTGCATACCG | 19 | 1 | - | - | - | - | |
| -------------GGAAGATAGATTTATGACCT----------------------------------------------------------------------------------- | 20 | - | 1 | - | - | - | |
| rat | ggtgagacgctttGGAAGATAGATTTATGACCTTAGTTagggacttggccatatacctatgggaagACACTCAGCATAAGAAACTACATCTTTTCTTCTAGCAACTGTGCATACCG | ||||||
| ******************************************************************************************************************** | |||||||
| rat | ((((...(((.((((((((.((((.((....(((((((.((..(((..(((((....))))).)))...)).))).))))....)).))))..)))))))).....)))..)))). | 0.540 -23.50 | |||||
| rat | chromosome:1:203032913:203033028:-1 | intergenic |
novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (4 loci)
sblock181 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.338 | no | no | 0.36/0.55 | 19/25/0.25 | 2.5 0.0 0.0 | 0.5 0.0 0.0 | 2 1 1 | 0 0 0 | 2 1 1 | 0 0 0 | 5 30 11 | 8 -17 2 | 5arm 5arm_loop_3arm 3arm | 21 21 21 | nd nd nd | 0.44 0.52 0.50 | 4 4 5 | 4 | 2 | -3 | -8 |
| reads | miRBase family seed | |||
| seed | ------AGCAUAA-------------------------------------------------------------- | 1 | novel | |
| seed | -----------AAUCAUU--------------------------------------------------------- | 1 | novel | |
| seed | -------------------------------GGAGCCA------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------AGUAACU----------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ----------TAATCATTAAGGGTAGGGA---------------------------------------------- | 19 | 1 | - | |
| --------------------------------------------GAGTAACTGTCTGAGGCTGG----------- | 20 | - | 1 | |
| -----TAGCATAATCATTAAGGGTAGGGAA--------------------------------------------- | 25 | - | 1 | |
| ------------------------------TGGAGCCATAACTGGAGTAACTGTC-------------------- | 25 | - | 1 | |
| rat | ggaagTAGCATAATCATTAAGGGTAGGGAATGGAGCCATAACTGGAGTAACTGTCTGAGGCTGGttgtgaagcca | |||
| *************************************************************************** | ||||
| ------------------------------------------------------------------------------------- | ENSRNOT00000045258 ENSRNOG00000033713 | |||
| ------------------------------------------------------------------------------------- | ENSRNOT00000043557 ENSRNOG00000033713 | |||
| ------------------------------------------------------------------------------------- | ENSRNOT00000051032 ENSRNOG00000033713 | |||
| rat | ((......((((((((....((..((...((....(((....))).))..))..)).....))))))))...)). | 0.880 -14.70 | ||
| rat | chromosome:1:49028245:49028319:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000051032|ENSRNOG00000033713 ## ENSRNOG00000033713|protein_coding|| |
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