other hairpins
novel_lenNOK_multiarm_DicerNOK_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH (4 loci)
sblock11413 [novel_lenNOK_multiarm_DicerNOK_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.658 | no | no | 0.50/0.65 | 18/23/0.50 | 0.0 1.3 | 0.0 0.3 | 1 3 | 0 0 | 1 1 | 0 0 | 2 3 | 22 19 | 5arm 3arm | 1 1 | nd nd | 0.41 0.43 | 4 5 | 4 | 1 | 3 | -2 |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------------------------GACUGUC-------------- | 2 | novel |
| seed | ---AGCAUCC-------------------------------------------------------------------------------------- | 1 | novel |
| seed | -----------------------------------------------------------------------CCCUGAC------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------------------------------------------------------------------TGACTGTCGCCCTGATCC---- | 18 | 2 | |
| --TAGCATCCTTAGACAACCGGGT------------------------------------------------------------------------ | 22 | 1 | |
| ----------------------------------------------------------------------TCCCTGACTGTCGCCCTGATCCC--- | 23 | 1 | |
| rat | gcTAGCATCCTTAGACAACCGGGTacaccatggttctgcctgctctaggacagagcaggaggcacggcccTCCCTGACTGTCGCCCTGATCCCtgg | ||
| ************************************************************************************************ | |||
| rat | .((((.(((....((((..((((....((.((..(((.((((((((.....))))))))))))).)).....))))..)))).....)))..)))) | 0.600 -28.10 |
| rat | chromosome:7:116642163:116642258:1 | intergenic |
sblock7488 [novel_lenNOK_multiarm_DicerNOK_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.989 | no | no | 0.63/0.79 | 19/19/0.00 | 0.0 1.5 | 0.0 1.5 | 1 2 | 0 0 | 1 1 | 0 0 | 1 2 | 35 37 | 5arm 3arm | 1 1 | nd nd | 0.32 0.32 | 4 4 | 3 | 2 | -2 | -4 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------------------------------------------------UCGAGCA------------- | 1 | novel | |
| seed | -------------------------------------------------------------------------------------------------GGCUCGA---------------- | 1 | novel | |
| seed | --CCCGCCU--------------------------------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T3S2 | |||
| ------------------------------------------------------------------------------------------------AGGCTCGAGCAGACAACGC----- | 19 | - | 1 | |
| -CCCCGCCTCTGGCTCCTGC---------------------------------------------------------------------------------------------------- | 19 | 1 | - | |
| ---------------------------------------------------------------------------------------------------CTCGAGCAGACAACGCGGC-- | 19 | - | 1 | |
| rat | gCCCCGCCTCTGGCTCCTGCgcctgcgcaatcccctagctccgccctgcccctgcccaagcagccgccagagaggaacggaggacggtggcccacgAGGCTCGAGCAGACAACGCGGCgg | |||
| ************************************************************************************************************************ | ||||
| rat | .((((((.(((.((((....((((.((....((((...(((((.(((((..((((....))))..)).....)))..)))))...)).))....))))))..)))))))....)))).)) | 0.540 -41.30 | ||
| rat | chromosome:3:33926688:33926807:-1 | intergenic ## {Repeats: trf 1 10 0 class=trf,dust 33926797 33926807 0 class=dust,G-rich 4 108 -1 class=Low_complexity,G-rich 36 55 -1 class=Low_complexity} |
sblock7643 [novel_lenNOK_multiarm_DicerNOK_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.394 | no | no | 0.37/0.54 | 18/26/0.29 | 0.0 0.0 1.2 | 0.0 0.0 2.0 | 1 1 5 | 0 0 0 | 1 1 1 | 0 0 0 | 4 16 0 | -2 -13 11 | 5arm_loop 5arm_loop_3arm 3arm | 2 2 2 | nd nd nd | 0.45 0.47 0.61 | 4 4 5 | 7 | 1 | 16 | 11 |
| reads | miRBase family seed | ||
| seed | ---------------------------------------CUACUAA------------------ | 3 | novel |
| seed | -----------------AGGAAUC---------------------------------------- | 1 | novel |
| seed | -----GGACAUU---------------------------------------------------- | 1 | novel |
| seed | --------------------------------------------AAAUCCC------------- | 1 | novel |
| seed | --------------------------------------GCUACUA------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------------------------------GCTACTAAATCCCCAGCGCACAACAC | 26 | 2 | |
| -------------------------------------------TAAATCCCCAGCGCACAACAC | 21 | 1 | |
| -------------------------------------TGCTACTAAATCCCCAGC--------- | 18 | 1 | |
| ----------------TAGGAATCGTTTCATGCTT----------------------------- | 19 | 1 | |
| --------------------------------------GCTACTAAATCCCCAGCGCACAACA- | 25 | 1 | |
| ----TGGACATTGCAATAGGAATC---------------------------------------- | 20 | 1 | |
| rat | gggaTGGACATTGCAATAGGAATCGTTTCATGCTTtgTGCTACTAAATCCCCAGCGCACAACAC | ||
| **************************************************************** | |||
| rat | ((((((((((..(((....(((....))).)))..))).)).....)))))............. | 0.990 -12.20 |
| rat | chromosome:3:140676402:140676465:-1 | intergenic |
novel_lenNOK_multiarm_DicerNOK_shortStem_randfoldOK_bulgeHIGH (4 loci)
sblock10236 [novel_lenNOK_multiarm_DicerNOK_shortStem_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.56/0.63 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 3 1 | 0 0 | 1 1 | 0 0 | 4 0 | 7 19 | 5arm 3arm | 1 1 | nd nd | 0.28 0.50 | 4 5 | 4 | 2 | 17 | 4 |
| reads | miRBase family seed | |||
| seed | -----GGCUUAG------------------------------------------------------------ | 3 | novel | |
| seed | ------------------------------------------------------AGUCCAG----------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S2 | T5S2 | |||
| ----TGGCTTAGAAGCAGCACC-------------------------------------------------- | 18 | 3 | - | |
| -----------------------------------------------------CAGTCCAGCCATGCTCCAC | 19 | - | 1 | |
| rat | agtgTGGCTTAGAAGCAGCACCtgcccagtggagctgggagaggatgcgagctCAGTCCAGCCATGCTCCAC | |||
| ************************************************************************ | ||||
| ---------------------------------------------------------------------------------- | ENSRNOT00000019894 ENSRNOG00000014720 RGD1562788_predicted | |||
| rat | (((((((((....(((.((((((.(((((.....)))))..))).)))..)))......))))))))).... | 1.000 -30.90 | ||
| rat | chromosome:6:9519459:9519530:1 | Opposite_strand|Intronic_coding|ENSRNOT00000019894|ENSRNOG00000014720 ## ENSRNOG00000014720|protein_coding|RGD1562788_predicted| |
sblock1089 [novel_lenNOK_multiarm_DicerNOK_shortStem_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.50/0.63 | 19/20/0.67 | 0.0 0.0 | 0.0 0.0 | 1 2 | 0 0 | 1 1 | 0 0 | 2 0 | 32 35 | 5arm 3arm | 1 1 | nd nd | 0.26 0.32 | 4 4 | 3 | 2 | 6 | 2 |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------------------------------------GGGUUAA------------ | 2 | novel | |
| seed | ---AGUACCG------------------------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T5S2 | |||
| --------------------------------------------------------------------------------------------AGGGTTAAGCGGTGGTTGAT | 20 | 2 | - | |
| --GAGTACCGCCCCTTCCTGA------------------------------------------------------------------------------------------- | 19 | - | 1 | |
| rat | ttGAGTACCGCCCCTTCCTGAtgccccacccaagccacaggctcaagtagacaaaagtgagtgtttgagtgtttggagataaggctactggaAGGGTTAAGCGGTGGTTGAT | |||
| **************************************************************************************************************** | ||||
| -------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000027047 ENSRNOG00000019968 Trim8_predicted | |||
| rat | ((((.(((((((((((((....(((....((((((.....(((((((((..((....))..)))))))))))))))......)))....)))))))....)))))).)))). | 0.960 -39.70 | ||
| rat | chromosome:1:251729117:251729228:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000027047|ENSRNOG00000019968 ## ENSRNOG00000019968|protein_coding|Trim8_predicted| ## {Repeats: dust 251729117 251729117 0 class=dust} |
sblock11292 [novel_lenNOK_multiarm_DicerNOK_shortStem_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.50/0.63 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 4 1 | 9 12 | 5arm 3arm | 1 1 | nd nd | 0.28 0.26 | 3 4 | 2 | 2 | 5 | 2 |
| reads | miRBase family seed | |||
| seed | -----CCCUUUA---------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------------AGGGCAA------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T4S2 | |||
| --------------------------------------------------AAGGGCAAAGCCCCGGAAG- | 19 | 1 | - | |
| ----TCCCTTTACCCTGTGTCA------------------------------------------------ | 18 | - | 1 | |
| rat | cactTCCCTTTACCCTGTGTCAttcaccggaagtcctatttggtgaaaggAAGGGCAAAGCCCCGGAAGt | |||
| ********************************************************************** | ||||
| rat | .((((((((((.((((...((.(((((((((.......))))))))).)).)))).))))....)))))) | 0.990 -25.60 | ||
| rat | chromosome:7:58169359:58169428:1 | intergenic |
sblock7169 [novel_lenNOK_multiarm_DicerNOK_shortStem_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.57/0.68 | 19/23/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 2 2 | 1 6 | 5arm 3arm | 1 1 | nd nd | 0.30 0.26 | 4 4 | 2 | 2 | 3 | 0 |
| reads | miRBase family seed | |||
| seed | ---AAACACC------------------------------------------------ | 1 | novel | |
| seed | --------------------------------------GCUCGCC------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T5S1 | |||
| --CAAACACCAAAGGGCCAGCAGAG--------------------------------- | 23 | - | 1 | |
| -------------------------------------TGCTCGCCCTTGGCCACTG-- | 19 | 1 | - | |
| rat | ggCAAACACCAAAGGGCCAGCAGAGcttcctgtccctTGCTCGCCCTTGGCCACTGcc | |||
| ********************************************************** | ||||
| rat | ((((....((.((((((.(((((.((.....))...))))).))))))))....)))) | 1.000 -22.30 | ||
| rat | chromosome:20:5548650:5548707:1 | intergenic |
novel_lenNOK_multiarm_Multihit_5varHIGH_loopOverlap_nonpairedHIGH (4 loci)
block485603 [novel_lenNOK_multiarm_Multihit_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.021 | no | no | 0.42/0.53 | 19/24/0.33 | 0.0 2.5 | 0.0 0.0 | 1 2 | 0 0 | 1 2 | 0 0 | 11 17 | 0 -11 | 5arm 5arm_loop_3arm | 14 14 | nd nd | 0.32 0.46 | 3 5 | 3 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ------------------GAUCAGG-------------------------------------------------- | 1 | novel | ||
| seed | ------------GCCCUAG-------------------------------------------------------- | 1 | novel | ||
| seed | -----------------------GGAGAUC--------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T3S2 | T5S2 | |||
| -----------AGCCCTAGATCAGGAGATC--------------------------------------------- | 19 | 1 | - | - | |
| ----------------------AGGAGATCATTGAGGTAGA---------------------------------- | 19 | - | - | 1 | |
| -----------------AGATCAGGAGATCATTGAGGTAGA---------------------------------- | 24 | - | 1 | - | |
| rat | cctgagggctcAGCCCTAGATCAGGAGATCATTGAGGTAGAtcctgacaccaagaaaatgctgaaccttccaggc | ||||
| *************************************************************************** | |||||
| rat | ((((((((.(((((.((...((((((.(((.....)))...)))))).....)).....))))).))))).))). | 0.700 -24.00 | |||
| rat | chromosome:15:33508843:33508917:1 | intergenic |
block564669 [novel_lenNOK_multiarm_Multihit_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.071 | no | no | 0.61/0.64 | 19/25/0.25 | 0.0 1.7 | 0.0 1.0 | 1 3 | 0 0 | 1 1 | 0 0 | 1 7 | 10 -5 | 5arm 5arm_loop_3arm | 6 14 | nd nd | 0.42 0.36 | 4 3 | 4 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------AGCCAGA---------------------------------------------- | 2 | novel | |
| seed | --CCGUUGA---------------------------------------------------- | 1 | novel | |
| seed | -------------GAGCCAG----------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T2S1 | |||
| -------GAGCCAGAGCCAGCTATGTCCACCC----------------------------- | 25 | 2 | - | |
| -TCCGTTGAGCCAGAGCCAG----------------------------------------- | 19 | - | 1 | |
| ------------AGAGCCAGCTATGTCCACCCACC-------------------------- | 23 | 1 | - | |
| rat | cTCCGTTGAGCCAGAGCCAGCTATGTCCACCCACCgtgccgacagtctggctgctcttgag | |||
| ************************************************************* | ||||
| rat | (((....((((...((((((...(((((((.....)))..))))..))))))))))..))) | 1.000 -21.00 | ||
| rat | chromosome:16:20824593:20824653:1 | intergenic |
sblock264 [novel_lenNOK_multiarm_Multihit_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.164 | no | no | 0.35/0.42 | 19/23/0.50 | 1.7 0.0 | 1.0 0.0 | 3 1 | 0 0 | 3 1 | 0 0 | 0 29 | 21 -9 | 5arm 3arm_loop | 22 22 | nd nd | 0.41 0.58 | 3 8 | 4 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -AAGACAG--------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | ------AGAAACG---------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ------------------------------------------------CAACACA---------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T4S2 | T5S1 | |||
| TAAGACAGAAACGATTTTGCAG------------------------------------------------------------------------- | 22 | - | - | 1 | |
| -----------------------------------------------TCAACACAAAGCAAACTGG----------------------------- | 19 | - | - | 1 | |
| -----CAGAAACGATTTTGCAGAA----------------------------------------------------------------------- | 19 | 1 | - | - | |
| TAAGACAGAAACGATTTTGCAGA------------------------------------------------------------------------ | 23 | - | 1 | - | |
| rat | TAAGACAGAAACGATTTTGCAGAAaaggataccagagacagagctaaTCAACACAAAGCAAACTGGgtagaacaaagcacaaaggtacctgtcta | ||||
| *********************************************************************************************** | |||||
| --------------------------------------------------------------------------------------------------------- | ENSRNOT00000041575 ENSRNOG00000031160 LOC685793 | ||||
| rat | ..((((((..((..((.(((.........((((.....(((.(((...........)))...))))))).......))).))..))..)))))). | 0.730 -14.79 | |||
| rat | chromosome:1:50175745:50175839:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000049496|ENSRNOG00000031160 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000041575|ENSRNOG00000031160 ## ENSRNOG00000031160|protein_coding|LOC685793| |
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