other hairpins
novel_lenNOK_multiarm_Multihit_5varHIGH_loopOverlap_nonpairedHIGH (4 loci)
block2091679 [novel_lenNOK_multiarm_Multihit_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.291 | no | no | 0.42/0.61 | 19/23/0.43 | 0.0 1.5 | 0.0 2.8 | 1 6 | 0 0 | 1 2 | 0 0 | 31 23 | -10 -17 | 5arm_loop_3arm 5arm_loop_3arm | 16 16 | nd nd | 0.39 0.35 | 4 3 | 7 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------------------GCACACU----------------------------------------- | 3 | novel | |
| seed | ----------------------------------------------CACUCAG-------------------------------------- | 2 | novel | |
| seed | --------------------------------CCCCUGC---------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------------GGAGCAC-------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| ------------------------------------------AGCACACTCAGTATCTACA------------------------------ | 19 | - | 3 | |
| ---------------------------------------------ACACTCAGTATCTACATGGACCC----------------------- | 23 | - | 2 | |
| ---------------------------------------TGGAGCACACTCAGTATCT--------------------------------- | 19 | 1 | - | |
| -------------------------------TCCCCTGCTGGAGCACACTCAGT------------------------------------- | 23 | - | 1 | |
| rat | ttgggtccttctccatttttaggtcaggatgTCCCCTGCTGGAGCACACTCAGTATCTACATGGACCCcctttggcattactaggtcctag | |||
| ******************************************************************************************* | ||||
| rat | .((((.(((...(((......((((...((((....((((.(((....)))))))...)))).)))).....))).......))).)))). | 0.450 -21.60 | ||
| rat | chromosome:7:19393628:19393718:-1 | intergenic |
novel_lenNOK_multiarm_loopOverlap_mirtron (4 loci)
block138852 [novel_lenNOK_multiarm_loopOverlap_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.518 | no | no | 0.44/0.55 | 18/20/0.50 | 0.0 0.0 | 0.0 0.0 | 2 2 | 0 0 | 1 1 | 0 0 | 31 36 | 2 -5 | 5arm 5arm_loop_3arm | 1 1 | 7 0 | 0.22 0.35 | 2 4 | 4 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------CAUCUCU------------------------------------------------------------------------ | 2 | novel | |
| seed | -------------------------------------CUUCUCA------------------------------------------------------------------- | 2 | novel | |
| len | cloning frequencies | |||
| T1S1 | T2S1 | |||
| ------------------------------------TCTTCTCAACCACCCCTCAG------------------------------------------------------- | 20 | 2 | - | |
| -------------------------------TCATCTCTTCTCAACCAC-------------------------------------------------------------- | 18 | - | 2 | |
| rat | agttcctttgcttctgttcctggactatcgtTCATCTCTTCTCAACCACCCCTCAGggtcctgctggccggagcagacgtgaacttggcatggggccgacgctacgggcta | |||
| *************************************************************************************************************** | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000002327 ENSRNOG00000001710 Abcf3 | |||
| rat | (((((....((.((.(((((....(((..((((((.(((.(((..((((((....))))......))...))).))).)))))).)))...))))).)).))...))))). | 0.620 -32.10 | ||
| rat | chromosome:11:82580298:82580408:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000002328|ENSRNOG00000001710 ## Same_strand|Intronic_coding|ENSRNOT00000002327|ENSRNOG00000001710 ## ENSRNOG00000001710|protein_coding|Abcf3|ATP-binding cassette sub-family F member 3. [Source:UniProtKB/Swiss-Prot;Acc:Q66H39] |
block1012159 [novel_lenNOK_multiarm_loopOverlap_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.201 | no | no | 0.45/0.58 | 19/21/0.60 | 0.0 0.0 0.0 0.0 | 1.0 0.0 0.0 0.0 | 2 1 1 1 | 0 0 0 0 | 2 1 1 1 | 0 0 0 0 | 31 38 47 52 | 2 -5 -12 -18 | 5arm 5arm_loop_3arm 5arm_loop_3arm 5arm_loop_3arm | 1 1 1 1 | 22 15 6 1 | 0.21 0.38 0.58 0.50 | 1 4 5 5 | 5 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | --------------------------------CCAGCAG------------------------------------------------------------------------ | 2 | novel | |||
| seed | -----------------------------------------------------CGUGAGU--------------------------------------------------- | 1 | novel | |||
| seed | ------------------------------------------------AGAAACG-------------------------------------------------------- | 1 | novel | |||
| seed | ---------------------------------------CAGCAAC----------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S2 | T5S1 | T5S2 | |||
| -----------------------------------------------GAGAAACGTGAGTGAGAGC--------------------------------------------- | 19 | 1 | - | - | - | |
| -------------------------------ACCAGCAGCAGCAACTGAGAA----------------------------------------------------------- | 21 | - | - | - | 1 | |
| --------------------------------------GCAGCAACTGAGAAACGTGAG---------------------------------------------------- | 21 | - | - | 1 | - | |
| -------------------------------ACCAGCAGCAGCAACTGAG------------------------------------------------------------- | 19 | - | 1 | - | - | |
| ----------------------------------------------------ACGTGAGTGAGAGCTAAGTT--------------------------------------- | 20 | - | 1 | - | - | |
| rat | cgtacgccatgcgccctgggcgtgatggagcACCAGCAGCAGCAACTGAGAAACGTGAGTGAGAGCTAAGTTgctctctgggttagacgcgcagtttgtttccaggggtac | |||||
| *************************************************************************************************************** | ||||||
| .............................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000025318 ENSRNOG00000018654 LOC688534 | |||||
| rat | .((((.((..(((..(((.((((.....(((.((((.((.(((((((.((..((....)).....)).))))))))))))))))..)))).)))..))).....)).)))) | 0.640 -42.70 | ||||
| rat | chromosome:1:163369728:163369838:1 | Same_strand|Boundary_coding|ENSRNOT00000025318|ENSRNOG00000018654 ## ENSRNOG00000018654|protein_coding|LOC688534|Mitochondrial import inner membrane translocase subunit Tim9 B (TIMM10B) (Tim10b) (Fracture callus protein 1) (FxC1). [Source:UniProtKB/Swiss-Prot;Acc:Q9R1B1] |
sblock2432 [novel_lenNOK_multiarm_loopOverlap_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.468 | no | no | 0.56/0.67 | 18/21/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 28 0 | -4 13 | 5arm_loop_3arm 3arm | 1 1 | 28 2 | 0.50 0.25 | 4 2 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------GAGCCAU------------- | 1 | novel |
| seed | -----------------------------GGUGGAA-------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S2 | |||
| ----------------------------AGGTGGAAGGGAGTGACT---------------------------------- | 18 | 1 | |
| -----------------------------------------------------------TGAGCCATGTCCCCTCCCCAC | 21 | 1 | |
| rat | ggtgagaatcagctaaaggatgaggcttAGGTGGAAGGGAGTGACTgctgctgtgtggcTGAGCCATGTCCCCTCCCCAC | ||
| ******************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000056128 ENSRNOG00000022536 RGD1309650_predicted | ||
| >>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>> | ENSRNOT00000020105 ENSRNOG00000014883 Git1 | ||
| >>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>> | ENSRNOT00000056112 ENSRNOG00000014883 Git1 | ||
| rat | ((.(((...........(((((.(((((((.((...((.(((....))).))...)).))))))).))))).))).)).. | 0.430 -23.40 |
| rat | chromosome:10:66617253:66617332:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000031618|ENSRNOG00000022536 ## Same_strand|Intronic_coding|ENSRNOT00000056128|ENSRNOG00000022536 ## ENSRNOG00000022536|protein_coding|RGD1309650_predicted| ## ENSRNOG00000014883|protein_coding|Git1|ARF GTPase-activating protein GIT1 (G protein-coupled receptor kinase- interactor 1) (GRK-interacting protein 1) (Cool-associated and tyrosine-phosphorylated protein 1) (Cat-1). [Source:UniProtKB/Swiss-Prot;Acc:Q9Z272] |
sblock9899 [novel_lenNOK_multiarm_loopOverlap_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.085 | no | no | 0.58/0.67 | 18/22/0.60 | 0.0 0.0 | 2.3 0.5 | 3 2 | 0 0 | 3 2 | 0 0 | 17 42 | 15 -6 | 5arm 3arm_loop | 1 1 | 15 0 | 0.17 0.70 | 2 9 | 5 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ------------------GUGGGGU------------------------------------------------------------------------------------------- | 3 | novel | ||||
| seed | -------------------------------------------------------UCAUUGG------------------------------------------------------ | 2 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T5S1 | |||
| ------------------------------------------------------CTCATTGGGTCCCTCCACA------------------------------------------- | 19 | 1 | - | - | - | - | |
| -----------------GGTGGGGTGTCTGCTCTGAGTG----------------------------------------------------------------------------- | 22 | - | - | - | 1 | - | |
| ------------------------------------------------------CTCATTGGGTCCCTCCACAG------------------------------------------ | 20 | - | - | 1 | - | - | |
| -----------------GGTGGGGTGTCTGCTCTGAGT------------------------------------------------------------------------------ | 21 | - | 1 | - | - | - | |
| -----------------GGTGGGGTGTCTGCTCTG--------------------------------------------------------------------------------- | 18 | - | - | - | - | 1 | |
| rat | cgggtaggcagcaggtgGGTGGGGTGTCTGCTCTGAGTGgtgcccacacagcccCTCATTGGGTCCCTCCACAGgcatcctccttcagcagcatcaccgactctaccatgtccctg | ||||||
| ******************************************************************************************************************** | |||||||
| >>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000026439 ENSRNOG00000019423 Dvl1 | ||||||
| rat | ((((..((((...(((((((((((((.(((((..(((.((((((......((((......)))).........)))))))))....))))))))).)).)).))))).)))))))) | 0.970 -44.86 | |||||
| rat | chromosome:5:172713079:172713194:1 | Same_strand|Intronic_coding|ENSRNOT00000026439|ENSRNOG00000019423 ## ENSRNOG00000019423|protein_coding|Dvl1|Segment polarity protein dishevelled homolog DVL-1 (Dishevelled-1) (DSH homolog 1). [Source:UniProtKB/Swiss-Prot;Acc:Q9WVB9] |
novel_loopOverlap_mirtron_randfoldOK (4 loci)
block852321 [novel_loopOverlap_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.60/0.60 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 19 | -3 | 3arm_loop | 1 | 4 | 0.30 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------AAGCCAC------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| --------------------------------------------TAAGCCACACCCACTCCTCC------------------- | 20 | 1 | |
| rat | aaaagaaaagcggttctgttcaggtgtgggtgtgtccctgccacTAAGCCACACCCACTCCTCCttaggaccgcctgtatttt | ||
| *********************************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000019825 ENSRNOG00000014688 Prkcc | ||
| rat | .........(((((((((...(((.(((((((((.....((......))))))))))).)))...)))))))))......... | 1.000 -35.70 |
| rat | chromosome:1:64153270:64153352:-1 | Same_strand|Intronic_coding|ENSRNOT00000019825|ENSRNOG00000014688 ## ENSRNOG00000014688|protein_coding|Prkcc|Protein kinase C gamma type (EC 2.7.11.13) (PKC-gamma). [Source:UniProtKB/Swiss-Prot;Acc:P63319] |
block1031079 [novel_loopOverlap_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.60/0.60 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 24 | -1 | 3arm | 1 | 1 | 0.25 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------GGUGAGC------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| ------------------------------------------TGGTGAGCGCCTTACCTCCT------------------------ | 20 | 1 | |
| rat | gagaccaaggagagcaagaaggaggacctggtattcattttcTGGTGAGCGCCTTACCTCCTtatcctagctcttttgcctgcctc | ||
| ************************************************************************************** | |||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000028041 ENSRNOG00000020660 Cfl1 | ||
| rat | (((....((((((((.(((((((((....((..((((((....))))))..))...)))))))...)).))))))))......))) | 1.000 -30.00 |
| rat | chromosome:1:208136089:208136174:1 | Same_strand|Boundary_coding|ENSRNOT00000028041|ENSRNOG00000020660 ## ENSRNOG00000020660|protein_coding|Cfl1|Cofilin-1 (Cofilin, non-muscle isoform). [Source:UniProtKB/Swiss-Prot;Acc:P45592] |
block1543719 [novel_loopOverlap_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.57/0.57 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 36 | -2 | 3arm_loop | 1 | 1 | 0.29 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------UCACCUG------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T4S2 | |||
| -----------------------------------------------------------TTCACCTGCCCACCTCACAGA------------------------------------ | 21 | 1 | |
| rat | cttctctttttgtcttctcttcatttgggggtgaggggtggggcagtgtttctgacttaTTCACCTGCCCACCTCACAGAtccatgatgtactcaggagagctcaagtttgagaag | ||
| ******************************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000027173 ENSRNOG00000020032 Impdh1 | ||
| rat | ((((((..((((..(((((((((((((((.((((((....((((((((.............))).))))).))))))...)))).)))).....)))))))..))))...)))))) | 0.970 -44.22 |
| rat | chromosome:4:56077218:56077333:-1 | Same_strand|Boundary_coding|ENSRNOT00000027173|ENSRNOG00000020032 ## ENSRNOG00000020032|protein_coding|Impdh1|inosine 5'-phosphate dehydrogenase 1 Gene [Source:MGI Symbol;Acc:MGI:96567] |
block2567193 [novel_loopOverlap_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.61/0.61 | 23/23/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 25 | -2 | 5arm_loop | 1 | 4 | 0.26 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------CCAUCUC--------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S2 | |||
| -------------------------TCCATCTCCCTCGCCTTCTCCCT------------------------------------------------------------------ | 23 | 1 | |
| rat | gaggcagagggtagagcagccgggcTCCATCTCCCTCGCCTTCTCCCTacaggagcaggtagggatgatcaaggagaagtatgagcaccggatgctactgaagcacatgccttc | ||
| ****************************************************************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000024824 ENSRNOG00000018416 | ||
| rat | ((((((.....(((((((.((((((((.((((((((.((((.((((.....)))).))))))))).))).............)))).)))).)))).))).......)))))). | 0.410 -47.04 |
| rat | chromosome:9:9888223:9888336:1 | Same_strand|Intronic_coding|ENSRNOT00000024824|ENSRNOG00000018416 ## ENSRNOG00000018416|protein_coding|| |
novel_multiarm_DicerNOK_5varHIGH_nonpairedHIGH_bulgeHIGH (4 loci)
sblock11329 [novel_multiarm_DicerNOK_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.905 | no | no | 0.45/0.56 | 18/24/0.75 | 0.0 3.3 | 0.0 4.0 | 1 3 | 0 0 | 1 1 | 0 0 | 0 9 | 15 2 | 5arm 3arm | 1 1 | nd nd | 0.50 0.50 | 4 4 | 4 | 1 | -19 | -15 |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------GUCUAUG----------------------- | 1 | novel |
| seed | ----------------------------------------------AUGUCUA------------------------- | 1 | novel |
| seed | ------------------------------------------GACCAUG----------------------------- | 1 | novel |
| seed | -AGCAGAG---------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -----------------------------------------TGACCATGTCTATGTCTCCCTT--------------- | 22 | 1 | |
| ---------------------------------------------CATGTCTATGTCTCCCTTACACTG--------- | 24 | 1 | |
| -----------------------------------------------TGTCTATGTCTCCCTTACACTG--------- | 22 | 1 | |
| TAGCAGAGCGGCTATGAG------------------------------------------------------------ | 18 | 1 | |
| rat | TAGCAGAGCGGCTATGAGtgaagagaagttgagaaagacctTGACCATGTCTATGTCTCCCTTACACTGcccatatgg | ||
| ****************************************************************************** | |||
| rat | ...((....(((..((((.((..(((.((..((......))..))....)))...))...))))....)))....)). | 0.640 -13.60 |
| rat | chromosome:7:96058120:96058197:1 | intergenic |
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