other hairpins
novel_multiarm_DicerNOK_5varHIGH_nonpairedHIGH_bulgeHIGH (4 loci)
sblock1256 [novel_multiarm_DicerNOK_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.023 | no | no | 0.29/0.42 | 19/24/0.80 | 1.2 0.0 | 0.0 0.0 | 4 1 | 0 0 | 2 1 | 0 0 | 14 42 | 12 -1 | 5arm 3arm | 4 4 | nd nd | 0.37 0.33 | 5 5 | 5 | 2 | -14 | -17 |
| reads | miRBase family seed | |||
| seed | ---------------UUGCUCU--------------------------------------------------------------------------------------------- | 3 | novel | |
| seed | -----------------------------------------------------GAUUUUG------------------------------------------------------- | 1 | novel | |
| seed | --------------------CUGAUUG---------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| --------------TTTGCTCTGATTGTCTTGGGTACT----------------------------------------------------------------------------- | 24 | - | 3 | |
| ----------------------------------------------------TGATTTTGGCTTTTTGTTTCT------------------------------------------ | 21 | - | 1 | |
| -------------------TCTGATTGTCTTGGGTACT----------------------------------------------------------------------------- | 19 | 1 | - | |
| rat | gtacaggttcagcaTTTGCTCTGATTGTCTTGGGTACTaaggtcaaagtcaaTGATTTTGGCTTTTTGTTTCTtatccaacatattatttgtttgtcctgtgattattctgtgcc | |||
| ******************************************************************************************************************* | ||||
| rat | (((((((..(((.((..((......(((.((((((((.((((((((((((...))))))))))))..)).....)))))).)))......))..)).))).......))))))). | 0.800 -27.20 | ||
| rat | chromosome:1:47742135:47742249:1 | intergenic |
sblock128 [novel_multiarm_DicerNOK_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.023 | no | no | 0.29/0.42 | 19/24/0.80 | 1.2 0.0 | 0.0 0.0 | 4 1 | 0 0 | 2 1 | 0 0 | 14 42 | 12 -1 | 5arm 3arm | 4 4 | nd nd | 0.37 0.33 | 5 5 | 5 | 2 | -14 | -17 |
| reads | miRBase family seed | |||
| seed | ---------------UUGCUCU--------------------------------------------------------------------------------------------- | 3 | novel | |
| seed | -----------------------------------------------------GAUUUUG------------------------------------------------------- | 1 | novel | |
| seed | --------------------CUGAUUG---------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| --------------TTTGCTCTGATTGTCTTGGGTACT----------------------------------------------------------------------------- | 24 | - | 3 | |
| ----------------------------------------------------TGATTTTGGCTTTTTGTTTCT------------------------------------------ | 21 | - | 1 | |
| -------------------TCTGATTGTCTTGGGTACT----------------------------------------------------------------------------- | 19 | 1 | - | |
| rat | gtacaggttcagcaTTTGCTCTGATTGTCTTGGGTACTaaggtcaaagtcaaTGATTTTGGCTTTTTGTTTCTtatccaacatattatttgtttgtcctgtgattattctgtgcc | |||
| ******************************************************************************************************************* | ||||
| rat | (((((((..(((.((..((......(((.((((((((.((((((((((((...))))))))))))..)).....)))))).)))......))..)).))).......))))))). | 0.800 -27.20 | ||
| rat | chromosome:1:48340195:48340309:-1 | intergenic |
sblock1940 [novel_multiarm_DicerNOK_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.088 | no | no | 0.45/0.55 | 19/24/0.75 | 0.0 1.5 0.0 | 0.0 1.0 0.0 | 1 2 1 | 0 0 0 | 1 2 1 | 0 0 0 | 1 8 26 | 34 23 4 | 5arm 5arm 3arm | 1 1 1 | nd nd nd | 0.40 0.32 0.41 | 4 4 8 | 4 | 3 | -16 | -18 |
| reads | miRBase family seed | ||||
| seed | ----------------------------------------------------------------AGCAUGU---------------------------------------- | 1 | novel | ||
| seed | ------------CACUGUU-------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | --GCACCAU------------------------------------------------------------------------------------------------------ | 1 | novel | ||
| seed | ---------GAUCACU----------------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T4S1 | T4S2 | T5S1 | |||
| -TGCACCATGATCACTGTTGT------------------------------------------------------------------------------------------ | 20 | - | - | 1 | |
| --------TGATCACTGTTGTTCCACCCTCCT------------------------------------------------------------------------------- | 24 | - | - | 1 | |
| -----------TCACTGTTGTTCCACCCTC--------------------------------------------------------------------------------- | 19 | - | 1 | - | |
| ---------------------------------------------------------------TAGCATGTGCACATCCGGGAGA-------------------------- | 22 | 1 | - | - | |
| rat | tTGCACCATGATCACTGTTGTTCCACCCTCCTattcagtaacatgttctttgtgacttgtccaTAGCATGTGCACATCCGGGAGAggccttgcagctatgtactgctgcag | ||||
| *************************************************************************************************************** | |||||
| rat | .((((.((....((..(((((....(((((((........(((((((...((.((....)))).)))))))........))))).))....)))))..))...)).)))). | 0.920 -29.49 | |||
| rat | chromosome:1:128292115:128292225:1 | intergenic |
novel_multiarm_bulgeHIGH (4 loci)
sblock10615 [novel_multiarm_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.271 | no | no | 0.35/0.41 | 22/23/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 38 3 | 0 28 | 5arm 3arm | 5 5 | nd nd | 0.36 0.17 | 4 4 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------GGAGCAU------------------------------------------------------------------------ | 1 | novel |
| seed | ---------------------------------------------------------------------------------------------AAGCUCU------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------------------------------TGGAGCATTCTCAGAAAGTAGA---------------------------------------------------------- | 22 | 1 | |
| --------------------------------------------------------------------------------------------GAAGCTCTTGATATTAGAATGGT--- | 23 | 1 | |
| rat | atgcccccctccacaatttggtcaaagacgtttccttcTGGAGCATTCTCAGAAAGTAGAtggatcttctctgatgttcctagaacctattaGAAGCTCTTGATATTAGAATGGTata | ||
| ********************************************************************************************************************** | |||
| rat | (((((..........((((.(((.((((.(((((.((((((((((...(((((....(((....)))..))))))))))).)))).......))))))))))))....))))))))). | 0.570 -24.60 |
| rat | chromosome:7:17357980:17358097:-1 | intergenic |
sblock11037 [novel_multiarm_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.080 | no | no | 0.46/0.65 | 20/24/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 1 24 | 28 11 | 5arm 3arm | 1 2 | nd nd | 0.25 0.38 | 4 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --GCUGUCA------------------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------------------------CUUGUGC---------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| ----------------------------------------------------------------CCTTGTGCAACACTGCTTGATTAG------------------------ | 24 | 1 | - | |
| -GGCTGTCAGTCCCAAGGCTG------------------------------------------------------------------------------------------- | 20 | - | 1 | |
| rat | tGGCTGTCAGTCCCAAGGCTGctgtgagctctgtctatgaggaacttgagatatcctgtgttctCCTTGTGCAACACTGCTTGATTAGcttccatgccattgtatgatagct | |||
| **************************************************************************************************************** | ||||
| -------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000022945 ENSRNOG00000017057 LOC678774 | |||
| rat | .((((((((....((((((.((((.((((..(((.((..((((((..((....))..))....))))..))..)))..))))...))))......))).)))..)))))))) | 0.680 -32.20 | ||
| rat | chromosome:7:124345214:124345325:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000022945|ENSRNOG00000017057 ## ENSRNOG00000017057|protein_coding|LOC678774| |
sblock2247 [novel_multiarm_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.182 | no | no | 0.43/0.48 | 23/23/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 37 11 | 1 18 | 5arm 3arm | 1 1 | nd nd | 0.48 0.26 | 6 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------------------------GAAGCAG-------------------------- | 1 | novel | |
| seed | --------------------------------------CCCGGUU------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -----------------------------------------------------------------------------------TGAAGCAGTTTCTGGATCAAGAG----------- | 23 | - | 1 | |
| -------------------------------------TCCCGGTTCACTTCAAAAGCTCT--------------------------------------------------------- | 23 | 1 | - | |
| rat | tgcgtctaatcagctctcctagattctcgcttctcagTCCCGGTTCACTTCAAAAGCTCTaaacctgcagcagtgaggcttgtTGAAGCAGTTTCTGGATCAAGAGcggttgtgtgt | |||
| ********************************************************************************************************************* | ||||
| rat | .(((..(((((.(((((.(((((..((.(((((.(((.((....(((((......(((.((....)).)))))))))).)))..)))))))..)))))....))))))))))..))) | 0.970 -32.00 | ||
| rat | chromosome:1:263706900:263707016:1 | intergenic |
sblock9103 [novel_multiarm_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.013 | no | no | 0.50/0.50 | 20/20/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 21 | 20 0 | 5arm 3arm | 1 1 | nd nd | 0.30 0.25 | 3 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -CCCCAGG------------------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------------AGCACUC--------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| TCCCCAGGAATGTGGATCAA------------------------------------------------------------------------- | 20 | - | 1 | |
| ----------------------------------------------------CAGCACTCCAAGAAACCTCA--------------------- | 20 | 1 | - | |
| rat | TCCCCAGGAATGTGGATCAAttatgggcatttctgtgctggaactgaacaaaCAGCACTCCAAGAAACCTCAtggttggacatcacaagctgg | |||
| ********************************************************************************************* | ||||
| rat | ...((((...(((((.(((((((((((..(((((((((((............))))))....))))).)))))))))))...)))))..)))) | 1.000 -29.60 | ||
| rat | chromosome:4:164261851:164261943:1 | intergenic |
novel_multiarm_nonpairedHIGH (4 loci)
block2058047 [novel_multiarm_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.112 | no | no | 0.42/0.52 | 19/21/0.83 | 0.0 0.0 | 0.0 0.0 | 1 5 | 0 0 | 1 2 | 0 0 | 30 8 | -17 0 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.42 0.33 | 5 3 | 6 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | --------------------------------------ACAUGGG--------------------- | 5 | novel | ||
| seed | -------------------------------AAACUCU---------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S2 | T5S1 | |||
| -------------------------------------TACATGGGCTCTCGAACGTCT-------- | 21 | 2 | - | 3 | |
| ------------------------------TAAACTCTACATGGGCTCT----------------- | 19 | - | 1 | - | |
| rat | gtcttcaaagactgccgggtaaaagccaagTAAACTCTACATGGGCTCTCGAACGTCTataatgac | ||||
| ****************************************************************** | |||||
| rat | (((.....((((...((((....((((..(((.....)))...))))))))...)))).....))) | 0.840 -14.70 | |||
| rat | chromosome:6:122586755:122586820:1 | intergenic |
sblock2936 [novel_multiarm_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.223 | no | no | 0.45/0.86 | 20/22/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 28 | 34 7 | 5arm 3arm | 1 1 | nd nd | 0.36 0.50 | 3 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------------AUGUCAC---------------------------------------- | 1 | novel | |
| seed | -GGGGGCG--------------------------------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| -----------------------------------------------------------------------GATGTCACTAACTCACCTGA---------------------------- | 20 | - | 1 | |
| TGGGGGCGGGGGTGGGGGGGGA------------------------------------------------------------------------------------------------- | 22 | 1 | - | |
| rat | TGGGGGCGGGGGTGGGGGGGGAggaggcaaagggacctggaagttacctacagattttactattagtctgcGATGTCACTAACTCACCTGAagcctgccttgaccctctcaagtgacca | |||
| *********************************************************************************************************************** | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000032340 ENSRNOG00000028203 | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000032377 ENSRNOG00000028203 | |||
| rat | .((..((...((.(((((..((((((((..(((((......(((.((...((((((........))))))....)).)))...)).)))...)))).))))..)))))))..))..)). | 0.720 -38.50 | ||
| rat | chromosome:11:36781703:36781821:-1 | Same_strand|Intronic_coding|ENSRNOT00000032340|ENSRNOG00000028203 ## ENSRNOG00000028203|protein_coding|| ## {Repeats: dust 36781801 36781820 0 class=dust} |
sblock3243 [novel_multiarm_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.139 | no | no | 0.40/0.52 | 18/23/0.75 | 0.0 1.0 0.0 | 0.0 0.0 0.0 | 1 2 1 | 0 0 0 | 1 2 1 | 0 0 0 | 12 27 7 | 22 7 29 | 5arm 5arm 3arm | 1 1 1 | nd nd nd | 0.40 0.50 0.43 | 3 5 4 | 4 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ----------------------------AGGUAAA--------------------------------------------------------------------------------- | 1 | novel | |||
| seed | ---------------------------------------------------------------------------------------UGCUAGC---------------------- | 1 | novel | |||
| seed | ------------------------------GUAAAGA------------------------------------------------------------------------------- | 1 | novel | |||
| seed | -------------GAAUUUU------------------------------------------------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T3S1 | T4S2 | T5S1 | |||
| -----------------------------GGTAAAGACAGTAAACGC--------------------------------------------------------------------- | 18 | 1 | - | - | - | |
| ------------AGAATTTTTGAGACCCAGGT------------------------------------------------------------------------------------ | 20 | - | - | - | 1 | |
| ---------------------------CAGGTAAAGACAGTAAACGC--------------------------------------------------------------------- | 20 | - | - | 1 | - | |
| --------------------------------------------------------------------------------------GTGCTAGCTGAAGGAGCAAACCA------- | 23 | - | 1 | - | - | |
| rat | ggagggtgagctAGAATTTTTGAGACCCAGGTAAAGACAGTAAACGCagcgcgctgggcgggctgacagtgcagggttagaactggGTGCTAGCTGAAGGAGCAAACCAgcgtccg | |||||
| ******************************************************************************************************************** | ||||||
| ------------------------------------------------------------------------------------------------------------------------------ | ENSRNOT00000001899 ENSRNOG00000001402 Lrch4_predicted | |||||
| rat | (((.(((..(((....((((..((((((((.....(((.(((....((((.(((...))).))))....)))...)))....)))))).))....)))).)))..)))....))). | 0.880 -37.40 | ||||
| rat | chromosome:12:19693790:19693905:-1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000001899|ENSRNOG00000001402 ## ENSRNOG00000001402|protein_coding|Lrch4_predicted| |
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