other hairpins
novel_5varHIGH_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH (3 loci)
novel_Multihit_shortStem_5varHIGH (3 loci)
block844750 [novel_Multihit_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.450 | no | no | 0.35/0.55 | 19/22/0.83 | 4.0 | 2.8 | 6 | 0 | 2 | 0 | 4 | 9 | 5arm | 20 | nd | 0.16 | 3 | 6 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------CACAAGU------------------------------------------------------------------------ | 2 | novel | |
| seed | ----------CCACUGU------------------------------------------------------------------------------- | 2 | novel | |
| seed | ---------------GUCACAA-------------------------------------------------------------------------- | 1 | novel | |
| seed | -----CCACUCC------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ----------------TCACAAGTCTTCCAATTTGA------------------------------------------------------------ | 20 | - | 2 | |
| ---------TCCACTGTCACAAGTCTTCCAA----------------------------------------------------------------- | 22 | - | 2 | |
| ----GCCACTCCACTGTCACAAGTCT---------------------------------------------------------------------- | 22 | 1 | - | |
| --------------TGTCACAAGTCTTCCAATT--------------------------------------------------------------- | 19 | - | 1 | |
| rat | ctcaGCCACTCCACTGTCACAAGTCTTCCAATTTGAaggaactcaaatgttgcagcacctccacagttgtcgaagcaccattgatatggcactggg | |||
| ************************************************************************************************ | ||||
| rat | (((((.....(((.(((((...(((((((((((((.(((..((((.....)).))..))).)).)))))..)))).))...))))))))..))))) | 0.580 -19.20 | ||
| rat | chromosome:1:50347775:50347870:-1 | intergenic |
block2090677 [novel_Multihit_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.496 | no | no | 0.39/0.50 | 18/23/0.75 | 1.2 | 0.8 | 4 | 0 | 2 | 0 | 3 | 18 | 3arm | 14 | nd | 0.20 | 2 | 4 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------------------------CCCGUAC------------------ | 3 | novel | |
| seed | ------------------------------------------------------------------------------ACUUGCC------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ------------------------------------------------------------------------TCCCGTACTTGCCTAGAAACTCA--- | 23 | - | 2 | |
| ------------------------------------------------------------------------TCCCGTACTTGCCTAGAAAC------ | 20 | - | 1 | |
| -----------------------------------------------------------------------------TACTTGCCTAGAAACTCA--- | 18 | 1 | - | |
| rat | cattagtaggtcctagaagaggctaatgggtgtagcatggtatagtgaagaaggtcaagaagtgatgcaccaTCCCGTACTTGCCTAGAAACTCAtgg | |||
| ************************************************************************************************** | ||||
| rat | (((.(((...((.(((..(((....(((((((..((((.......(((......))).......))))..)).))))).)))..))))).))).))). | 0.770 -19.94 | ||
| rat | chromosome:7:18791805:18791902:-1 | intergenic |
block2090759 [novel_Multihit_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.496 | no | no | 0.39/0.50 | 18/23/0.75 | 1.2 | 0.8 | 4 | 0 | 2 | 0 | 3 | 18 | 3arm | 14 | nd | 0.20 | 2 | 4 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------------------------CCCGUAC------------------ | 3 | novel | |
| seed | ------------------------------------------------------------------------------ACUUGCC------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ------------------------------------------------------------------------TCCCGTACTTGCCTAGAAACTCA--- | 23 | - | 2 | |
| ------------------------------------------------------------------------TCCCGTACTTGCCTAGAAAC------ | 20 | - | 1 | |
| -----------------------------------------------------------------------------TACTTGCCTAGAAACTCA--- | 18 | 1 | - | |
| rat | cattagtaggtcctagaagaggctaatgggtgtagcatggtatagtgaagaaggtcaagaagtgatgcaccaTCCCGTACTTGCCTAGAAACTCAtgg | |||
| ************************************************************************************************** | ||||
| rat | (((.(((...((.(((..(((....(((((((..((((.......(((......))).......))))..)).))))).)))..))))).))).))). | 0.770 -19.94 | ||
| rat | chromosome:7:18799372:18799469:-1 | intergenic |
novel_cloningHIGH_Multihit_shortStem (3 loci)
block140359 [novel_cloningHIGH_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.161 | no | no | 0.50/0.53 | 18/23/0.85 | 0.0 | 0.0 | 73 | 0 | 5 | 0 | 4 | 34 | 3arm | 12 | nd | 0.15 | 2 | 110 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -------------------------------------------------------------------------------------------GAGUAAG---------------- | 108 | novel | ||||
| seed | --------------------------------------------------------------------------------------------AGUAAGU--------------- | 2 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S2 | T4S1 | T5S1 | |||
| ------------------------------------------------------------------------------------------TGAGTAAGTACAGGGGCAGA---- | 20 | 11 | 3 | 4 | 1 | 73 | |
| ------------------------------------------------------------------------------------------TGAGTAAGTACAGGGGCAG----- | 19 | - | - | - | - | 10 | |
| ------------------------------------------------------------------------------------------TGAGTAAGTACAGGGGCA------ | 18 | - | - | - | - | 5 | |
| -------------------------------------------------------------------------------------------GAGTAAGTACAGGGGCAGA---- | 19 | - | - | - | - | 2 | |
| ------------------------------------------------------------------------------------------TGAGTAAGTACAGGGGCAGATGC- | 23 | - | - | - | - | 1 | |
| rat | ggctttaatctgatctgctgcctactcttgcctgctgaatcaagtttacctttttaaggttactttttttttccctgattatcttgttccTGAGTAAGTACAGGGGCAGAtgct | ||||||
| ****************************************************************************************************************** | |||||||
| rat | (((....(((((.((((.(((.(((((..((......((((((((..((((.....)))).)))...........))))).....))....))))).)))))))..)))))))) | 0.410 -23.80 | |||||
| rat | chromosome:11:84949261:84949374:-1 | intergenic |
block962753 [novel_cloningHIGH_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.623 | no | no | 0.48/0.53 | 18/21/0.94 | 0.0 | 0.0 | 41 | 0 | 5 | 0 | 2 | 8 | 5arm | 18 | nd | 0.20 | 3 | 51 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ---GAGCCUG------------------------------------------------------ | 50 | novel | ||||
| seed | ----AGCCUGU----------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T4S1 | T5S1 | T5S2 | |||
| --TGAGCCTGTGTTGTGAAGCA------------------------------------------ | 20 | 1 | 1 | 2 | 41 | 2 | |
| --TGAGCCTGTGTTGTGAAG-------------------------------------------- | 18 | - | - | - | 1 | - | |
| --TGAGCCTGTGTTGTGAAGC------------------------------------------- | 19 | - | - | - | 1 | - | |
| --TGAGCCTGTGTTGTGAAGCAA----------------------------------------- | 21 | - | - | - | 1 | - | |
| ---GAGCCTGTGTTGTGAAGCA------------------------------------------ | 19 | - | - | - | 1 | - | |
| rat | gcTGAGCCTGTGTTGTGAAGCAattcctgtgtataacttcttgttacattaagcaataggatgc | ||||||
| **************************************************************** | |||||||
| -------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | ||||||
| rat | ((....(((((((((((.(((((.....((.....))...))))).)))..)))).))))..)) | 0.450 -10.80 | |||||
| rat | chromosome:1:51538638:51538701:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
block1602584 [novel_cloningHIGH_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.059 | no | no | 0.50/0.53 | 18/20/0.84 | 0.0 | 0.0 | 73 | 0 | 5 | 0 | 0 | 18 | 5arm | 12 | nd | 0.20 | 2 | 109 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -GAGUAAG---------------------------------------------------------------------------- | 107 | novel | ||||
| seed | --AGUAAGU--------------------------------------------------------------------------- | 2 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S2 | T4S1 | T5S1 | |||
| TGAGTAAGTACAGGGGCAGA---------------------------------------------------------------- | 20 | 11 | 3 | 4 | 1 | 73 | |
| TGAGTAAGTACAGGGGCAG----------------------------------------------------------------- | 19 | - | - | - | - | 10 | |
| TGAGTAAGTACAGGGGCA------------------------------------------------------------------ | 18 | - | - | - | - | 5 | |
| -GAGTAAGTACAGGGGCAGA---------------------------------------------------------------- | 19 | - | - | - | - | 2 | |
| rat | TGAGTAAGTACAGGGGCAGAggttctatgagtgtgttagagctggagcctcataaggagatctctggcatctttatttgagtca | ||||||
| ************************************************************************************ | |||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000055846 ENSRNOG00000037070 NP_001102823.1 | ||||||
| rat | .((.((((((.((..(((((((((.((((((.((.(((....))).))))))))....))))))).))..)).))))))..)). | 0.870 -22.20 | |||||
| rat | chromosome:4:166659689:166659772:-1 | Same_strand|Intronic_coding|ENSRNOT00000055846|ENSRNOG00000037070 ## ENSRNOG00000037070|protein_coding|NP_001102823.1|similar to macrophage antigen h (predicted) (RGD1560487_predicted), mRNA [Source:RefSeq_dna;Acc:NM_001109353] |
novel_cloningHIGH_multiarm_5varHIGH (3 loci)
block204122 [novel_cloningHIGH_multiarm_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.308 | no | no | 0.37/0.48 | 19/24/0.81 | 3.1 0.0 | 3.5 0.5 | 29 2 | 0 0 | 7 1 | 0 0 | 21 35 | 1 -7 | 5arm 5arm_loop_3arm | 3 3 | nd nd | 0.30 0.39 | 3 6 | 52 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | ------------------------ACGUCUU------------------------------------------------------------------------------ | 15 | novel | ||||||
| seed | -------------------------------AGCAUCU----------------------------------------------------------------------- | 12 | novel | ||||||
| seed | ----------------------GAACGUC-------------------------------------------------------------------------------- | 7 | novel | ||||||
| seed | ----------------------------CUUAGCA-------------------------------------------------------------------------- | 6 | novel | ||||||
| seed | -------------------------CGUCUUA----------------------------------------------------------------------------- | 5 | novel | ||||||
| seed | -----------------------AACGUCU------------------------------------------------------------------------------- | 3 | novel | ||||||
| seed | ------------------------------------CUUUGCA------------------------------------------------------------------ | 2 | novel | ||||||
| seed | ------------------GUUUGAA------------------------------------------------------------------------------------ | 1 | novel | ||||||
| seed | --------------------------------GCAUCUU---------------------------------------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S2 | T4S2 | T5S1 | |||
| -----------------------AACGTCTTAGCATCTTTGCA------------------------------------------------------------------ | 20 | 1 | - | 1 | 1 | - | 1 | 11 | |
| ------------------------------TAGCATCTTTGCATCTTGTG----------------------------------------------------------- | 20 | 1 | 1 | - | - | - | 1 | 9 | |
| ---------------------TGAACGTCTTAGCATCTTTG-------------------------------------------------------------------- | 20 | - | - | - | - | 1 | - | 5 | |
| ---------------------------TCTTAGCATCTTTGCATCTTGTG----------------------------------------------------------- | 23 | - | 1 | - | - | - | - | 4 | |
| ------------------------ACGTCTTAGCATCTTTGCA------------------------------------------------------------------ | 19 | - | 3 | - | - | - | - | 2 | |
| ----------------------GAACGTCTTAGCATCTTTG-------------------------------------------------------------------- | 19 | - | - | - | - | 1 | - | 2 | |
| ---------------------TGAACGTCTTAGCATCTTT--------------------------------------------------------------------- | 19 | - | - | - | - | - | - | 1 | |
| -----------------------------------TCTTTGCATCTTGTGCCCTTGAG--------------------------------------------------- | 23 | - | - | - | - | - | - | 1 | |
| -------------------------------AGCATCTTTGCATCTTGTG----------------------------------------------------------- | 19 | - | - | - | - | - | - | 1 | |
| -----------------TGTTTGAACGTCTTAGCATCTTTG-------------------------------------------------------------------- | 24 | - | - | - | - | - | - | 1 | |
| -----------------------------------TCTTTGCATCTTGTGCCCTTGA---------------------------------------------------- | 22 | - | - | - | - | - | - | 1 | |
| ---------------------------TCTTAGCATCTTTGCATCTTG------------------------------------------------------------- | 21 | - | 1 | - | - | - | - | - | |
| rat | agctttctggaccgccctgttTGAACGTCTTAGCATCTTTGCATCTTGTGcccttgagccacatgcagggacaatatattcaaaatagcgtggatgtcgggggaagctt | ||||||||
| ************************************************************************************************************* | |||||||||
| rat | ((((((((.((((((.(((((((((.....((...(((((((((..((.((......)))).)))))))))...))..)))))).))).))))...)).))).))))). | 0.450 -29.30 | |||||||
| rat | chromosome:12:44299611:44299719:-1 | intergenic |
block233449 [novel_cloningHIGH_multiarm_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.308 | no | no | 0.37/0.48 | 19/24/0.81 | 3.1 0.0 | 3.5 0.5 | 29 2 | 0 0 | 7 1 | 0 0 | 21 35 | 1 -7 | 5arm 5arm_loop_3arm | 3 3 | nd nd | 0.30 0.39 | 3 6 | 52 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | ------------------------ACGUCUU------------------------------------------------------------------------------ | 15 | novel | ||||||
| seed | -------------------------------AGCAUCU----------------------------------------------------------------------- | 12 | novel | ||||||
| seed | ----------------------GAACGUC-------------------------------------------------------------------------------- | 7 | novel | ||||||
| seed | ----------------------------CUUAGCA-------------------------------------------------------------------------- | 6 | novel | ||||||
| seed | -------------------------CGUCUUA----------------------------------------------------------------------------- | 5 | novel | ||||||
| seed | -----------------------AACGUCU------------------------------------------------------------------------------- | 3 | novel | ||||||
| seed | ------------------------------------CUUUGCA------------------------------------------------------------------ | 2 | novel | ||||||
| seed | ------------------GUUUGAA------------------------------------------------------------------------------------ | 1 | novel | ||||||
| seed | --------------------------------GCAUCUU---------------------------------------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S2 | T4S2 | T5S1 | |||
| -----------------------AACGTCTTAGCATCTTTGCA------------------------------------------------------------------ | 20 | 1 | - | 1 | 1 | - | 1 | 11 | |
| ------------------------------TAGCATCTTTGCATCTTGTG----------------------------------------------------------- | 20 | 1 | 1 | - | - | - | 1 | 9 | |
| ---------------------TGAACGTCTTAGCATCTTTG-------------------------------------------------------------------- | 20 | - | - | - | - | 1 | - | 5 | |
| ---------------------------TCTTAGCATCTTTGCATCTTGTG----------------------------------------------------------- | 23 | - | 1 | - | - | - | - | 4 | |
| ------------------------ACGTCTTAGCATCTTTGCA------------------------------------------------------------------ | 19 | - | 3 | - | - | - | - | 2 | |
| ----------------------GAACGTCTTAGCATCTTTG-------------------------------------------------------------------- | 19 | - | - | - | - | 1 | - | 2 | |
| ---------------------TGAACGTCTTAGCATCTTT--------------------------------------------------------------------- | 19 | - | - | - | - | - | - | 1 | |
| -----------------------------------TCTTTGCATCTTGTGCCCTTGAG--------------------------------------------------- | 23 | - | - | - | - | - | - | 1 | |
| -------------------------------AGCATCTTTGCATCTTGTG----------------------------------------------------------- | 19 | - | - | - | - | - | - | 1 | |
| -----------------TGTTTGAACGTCTTAGCATCTTTG-------------------------------------------------------------------- | 24 | - | - | - | - | - | - | 1 | |
| -----------------------------------TCTTTGCATCTTGTGCCCTTGA---------------------------------------------------- | 22 | - | - | - | - | - | - | 1 | |
| ---------------------------TCTTAGCATCTTTGCATCTTG------------------------------------------------------------- | 21 | - | 1 | - | - | - | - | - | |
| rat | agctttctggaccgccctgttTGAACGTCTTAGCATCTTTGCATCTTGTGcccttgagccacatgcagggacaatatattcaaaatagcgtggatgtcgggggaagctt | ||||||||
| ************************************************************************************************************* | |||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000056932 ENSRNOG00000037566 RGD1560398_predicted | ||||||||
| rat | ((((((((.((((((.(((((((((.....((...(((((((((..((.((......)))).)))))))))...))..)))))).))).))))...)).))).))))). | 0.450 -29.30 | |||||||
| rat | chromosome:12:43042253:43042361:1 | Same_strand|Intronic_non-coding|ENSRNOT00000056932|ENSRNOG00000037566 ## ENSRNOG00000037566|protein_coding|RGD1560398_predicted| |
block233468 [novel_cloningHIGH_multiarm_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.308 | no | no | 0.37/0.48 | 19/24/0.81 | 3.1 0.0 | 3.5 0.5 | 29 2 | 0 0 | 7 1 | 0 0 | 21 35 | 1 -7 | 5arm 5arm_loop_3arm | 3 3 | nd nd | 0.30 0.39 | 3 6 | 52 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | ------------------------ACGUCUU------------------------------------------------------------------------------ | 15 | novel | ||||||
| seed | -------------------------------AGCAUCU----------------------------------------------------------------------- | 12 | novel | ||||||
| seed | ----------------------GAACGUC-------------------------------------------------------------------------------- | 7 | novel | ||||||
| seed | ----------------------------CUUAGCA-------------------------------------------------------------------------- | 6 | novel | ||||||
| seed | -------------------------CGUCUUA----------------------------------------------------------------------------- | 5 | novel | ||||||
| seed | -----------------------AACGUCU------------------------------------------------------------------------------- | 3 | novel | ||||||
| seed | ------------------------------------CUUUGCA------------------------------------------------------------------ | 2 | novel | ||||||
| seed | ------------------GUUUGAA------------------------------------------------------------------------------------ | 1 | novel | ||||||
| seed | --------------------------------GCAUCUU---------------------------------------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S2 | T4S2 | T5S1 | |||
| -----------------------AACGTCTTAGCATCTTTGCA------------------------------------------------------------------ | 20 | 1 | - | 1 | 1 | - | 1 | 11 | |
| ------------------------------TAGCATCTTTGCATCTTGTG----------------------------------------------------------- | 20 | 1 | 1 | - | - | - | 1 | 9 | |
| ---------------------TGAACGTCTTAGCATCTTTG-------------------------------------------------------------------- | 20 | - | - | - | - | 1 | - | 5 | |
| ---------------------------TCTTAGCATCTTTGCATCTTGTG----------------------------------------------------------- | 23 | - | 1 | - | - | - | - | 4 | |
| ------------------------ACGTCTTAGCATCTTTGCA------------------------------------------------------------------ | 19 | - | 3 | - | - | - | - | 2 | |
| ----------------------GAACGTCTTAGCATCTTTG-------------------------------------------------------------------- | 19 | - | - | - | - | 1 | - | 2 | |
| ---------------------TGAACGTCTTAGCATCTTT--------------------------------------------------------------------- | 19 | - | - | - | - | - | - | 1 | |
| -----------------------------------TCTTTGCATCTTGTGCCCTTGAG--------------------------------------------------- | 23 | - | - | - | - | - | - | 1 | |
| -------------------------------AGCATCTTTGCATCTTGTG----------------------------------------------------------- | 19 | - | - | - | - | - | - | 1 | |
| -----------------TGTTTGAACGTCTTAGCATCTTTG-------------------------------------------------------------------- | 24 | - | - | - | - | - | - | 1 | |
| -----------------------------------TCTTTGCATCTTGTGCCCTTGA---------------------------------------------------- | 22 | - | - | - | - | - | - | 1 | |
| ---------------------------TCTTAGCATCTTTGCATCTTG------------------------------------------------------------- | 21 | - | 1 | - | - | - | - | - | |
| rat | agctttctggaccgccctgttTGAACGTCTTAGCATCTTTGCATCTTGTGcccttgagccacatgcagggacaatatattcaaaatagcgtggatgtcgggggaagctt | ||||||||
| ************************************************************************************************************* | |||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000056932 ENSRNOG00000037566 RGD1560398_predicted | ||||||||
| rat | ((((((((.((((((.(((((((((.....((...(((((((((..((.((......)))).)))))))))...))..)))))).))).))))...)).))).))))). | 0.450 -29.30 | |||||||
| rat | chromosome:12:43043398:43043506:1 | Same_strand|Intronic_non-coding|ENSRNOT00000056932|ENSRNOG00000037566 ## ENSRNOG00000037566|protein_coding|RGD1560398_predicted| |
novel_cloningHIGH_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (3 loci)
block1066945 [novel_cloningHIGH_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.046 | no | no | 0.35/0.53 | 18/26/0.76 | 0.0 0.0 3.3 0.0 | 1.2 0.0 3.2 0.0 | 12 1 13 17 | 0 0 0 0 | 8 1 3 1 | 0 0 0 0 | 17 26 17 5 | 6 -3 -20 14 | 5arm 5arm_loop 3arm 3arm | 1 1 2 2 | nd nd nd nd | 0.47 0.55 0.32 0.38 | 4 4 4 3 | 62 | 9 | 11 | 15 |
| reads | miRBase family seed | ||||||||||
| seed | ------------------GAGUCUC--------------------------------------------------------------------- | 24 | novel | ||||||||
| seed | ------------------------------------------------------------------GCCAACU--------------------- | 19 | novel | ||||||||
| seed | ------------------------------------------------AAAAUCA--------------------------------------- | 4 | novel | ||||||||
| seed | ----------------------CUCACAG----------------------------------------------------------------- | 3 | novel | ||||||||
| seed | ------------------------------------------GAUGGUA--------------------------------------------- | 2 | novel | ||||||||
| seed | -----------------------------------------------------CACCAAG---------------------------------- | 2 | novel | ||||||||
| seed | --------------------------------------------------AAUCACC------------------------------------- | 1 | novel | ||||||||
| seed | -------------------------------------------------AAAUCAC-------------------------------------- | 1 | novel | ||||||||
| seed | ---------------------------------------------------AUCACCA------------------------------------ | 1 | novel | ||||||||
| seed | ----------------CUGAGUC----------------------------------------------------------------------- | 1 | novel | ||||||||
| seed | ------------------------------------CACGUUG--------------------------------------------------- | 1 | novel | ||||||||
| seed | -----------AGGCUCU---------------------------------------------------------------------------- | 1 | novel | ||||||||
| seed | ---------------------------------------------GGUAAAA------------------------------------------ | 1 | novel | ||||||||
| seed | ---------------------------AGUUACA------------------------------------------------------------ | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------------------------------------------TGCCAACTAGAGCCAAAGGTCTCA----- | 24 | - | - | - | - | - | - | - | 17 | - | |
| -----------------TGAGTCTCACAGTTACAGGCAC------------------------------------------------------- | 22 | 1 | - | 1 | - | - | - | - | 7 | 1 | |
| -----------------TGAGTCTCACAGTTACAGG---------------------------------------------------------- | 19 | - | - | - | - | 1 | 1 | - | 5 | - | |
| -----------------------------------------------TAAAATCACCAAGTCTGATG--------------------------- | 20 | - | - | - | 1 | - | - | - | 2 | - | |
| -----------------------------------------TGATGGTAAAATCACCAAGTCTGA----------------------------- | 24 | - | 1 | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------------------TGCCAACTAGAGCCAAAGGT--------- | 20 | - | - | - | - | - | - | - | 2 | - | |
| -----------------TGAGTCTCACAGTTACAG----------------------------------------------------------- | 18 | - | - | - | - | - | - | 1 | 1 | - | |
| -----------------TGAGTCTCACAGTTACAGGCA-------------------------------------------------------- | 21 | - | 2 | - | - | - | - | - | - | - | |
| ----------------------------------------------------TCACCAAGTCTGATGCCAACT--------------------- | 21 | - | - | - | - | - | - | - | 1 | - | |
| ---------------------TCTCACAGTTACAGGCAC------------------------------------------------------- | 18 | - | - | - | - | - | - | - | 1 | - | |
| ---------------TCTGAGTCTCACAGTTACAG----------------------------------------------------------- | 20 | - | - | - | - | - | - | - | 1 | - | |
| -----------------TGAGTCTCACAGTTACAGGCACGT----------------------------------------------------- | 24 | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------TAAAATCACCAAGTCTGATGCCA------------------------ | 23 | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------GCACGTTGATGGTAAAATCACCAAG---------------------------------- | 25 | - | - | - | - | - | - | - | 1 | - | |
| -----------------TGAGTCTCACAGTTACAGGCACG------------------------------------------------------ | 23 | - | - | - | - | - | - | - | 1 | - | |
| --------------------------CAGTTACAGGCACGTTGATGGT---------------------------------------------- | 22 | - | - | - | - | - | - | - | 1 | - | |
| ---------------------TCTCACAGTTACAGGCACGT----------------------------------------------------- | 20 | - | - | - | - | - | - | 1 | - | - | |
| --------------------------------------------------AATCACCAAGTCTGATGCCAACT--------------------- | 23 | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------TGGTAAAATCACCAAGTCTGA----------------------------- | 21 | - | - | - | - | - | - | - | 1 | - | |
| -----------------TGAGTCTCACAGTTACAGGCACGTTG--------------------------------------------------- | 26 | - | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------TCACCAAGTCTGATGCCAACTAGAG----------------- | 25 | - | - | - | - | - | - | - | 1 | - | |
| ---------------------TCTCACAGTTACAGGCACG------------------------------------------------------ | 19 | - | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------------AAAATCACCAAGTCTGATG--------------------------- | 19 | - | - | - | - | - | - | - | 1 | - | |
| ----------CAGGCTCTGAGTCTCACAGTTACA------------------------------------------------------------ | 24 | - | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------------AAATCACCAAGTCTGATGCCAA----------------------- | 22 | - | - | - | - | - | - | - | 1 | - | |
| rat | ggccaggacccaggctcTGAGTCTCACAGTTACAGGCACgttgatggtaaaatcaccaagtctgaTGCCAACTAGAGCCAAAGGTCTCAttcca | ||||||||||
| ********************************************************************************************** | |||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000038623 ENSRNOG00000028243 NP_001103047.1 | ||||||||||
| rat | ((...(((((..((((((.(((....((....(((((....((((......))))....))))).))...)))))))))...)))))....)). | 0.530 -27.00 | |||||||||
| rat | chromosome:20:13190373:13190466:-1 | Same_strand|Intronic_non-coding|ENSRNOT00000038623|ENSRNOG00000028243 ## ENSRNOG00000028243|protein_coding|NP_001103047.1| |
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