other hairpins
novel_cloningHIGH_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (3 loci)
sblock1924 [novel_cloningHIGH_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.830 | no | no | 0.40/0.56 | 18/25/0.74 | 3.7 0.0 2.5 | 3.4 0.0 1.5 | 32 1 2 | 0 0 0 | 5 1 1 | 0 0 0 | 7 15 2 | -1 13 24 | 5arm_loop_3arm 3arm 3arm | 1 1 1 | nd nd nd | 0.32 0.50 0.32 | 4 5 3 | 57 | 6 | -8 | -5 |
| reads | miRBase family seed | |||||||
| seed | --------CGGACCU------------------------------------------------------------------------------ | 27 | novel | |||||
| seed | ---------------------GAGUGUA----------------------------------------------------------------- | 13 | novel | |||||
| seed | ------AUCGGAC-------------------------------------------------------------------------------- | 6 | novel | |||||
| seed | -------------------------------------------------------------------------AGAGAAU------------- | 1 | novel | |||||
| seed | -----UAUCGGA--------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | ------------------GCUGAGU-------------------------------------------------------------------- | 1 | novel | |||||
| seed | ----CUAUCGG---------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | -------------------CUGAGUG------------------------------------------------------------------- | 1 | novel | |||||
| seed | ----------------AAGCUGA---------------------------------------------------------------------- | 1 | novel | |||||
| seed | ---------------CAAGCUG----------------------------------------------------------------------- | 1 | novel | |||||
| seed | --------------------------------------------------------------------UCCAUAG------------------ | 1 | novel | |||||
| seed | -----------ACCUCAA--------------------------------------------------------------------------- | 1 | novel | |||||
| seed | ---------------------------------------------------------AGGUCAG----------------------------- | 1 | novel | |||||
| seed | -------------------------GUAAACC------------------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T3S2 | T5S1 | T5S2 | |||
| -------TCGGACCTCAAGCTGAGTGT------------------------------------------------------------------ | 20 | 2 | 1 | - | - | 23 | - | |
| --------------------TGAGTGTAAACCTGTGTAC------------------------------------------------------ | 19 | - | - | 1 | 1 | 9 | - | |
| -----TATCGGACCTCAAGCTGAGTGT------------------------------------------------------------------ | 22 | - | - | - | - | 6 | - | |
| --------------------TGAGTGTAAACCTGTGTACCTACT------------------------------------------------- | 24 | - | 1 | - | - | 1 | - | |
| ------------------GCTGAGTGTAAACCTGTGT-------------------------------------------------------- | 19 | - | - | - | - | 1 | - | |
| ------------------------------------------------------------------------TAGAGAATGTCTGCAGGCT-- | 19 | - | - | - | - | 1 | - | |
| -------------------------------------------------------------------TTCCATAGAGAATGTCTGCAG----- | 21 | - | - | - | - | 1 | - | |
| --------------------------------------------------------CAGGTCAGAAATTCCATAGAGA--------------- | 22 | - | - | - | - | - | 1 | |
| ---GCTATCGGACCTCAAGCTGAGTGT------------------------------------------------------------------ | 24 | - | - | - | - | 1 | - | |
| ----CTATCGGACCTCAAGCTGAGTGT------------------------------------------------------------------ | 23 | - | - | - | - | 1 | - | |
| --------------TCAAGCTGAGTGTAAACCTG----------------------------------------------------------- | 20 | - | - | - | - | 1 | - | |
| ----------GACCTCAAGCTGAGTGTAAACCTGT---------------------------------------------------------- | 25 | - | - | - | - | 1 | - | |
| -----------------AGCTGAGTGTAAACCTGTGT-------------------------------------------------------- | 20 | - | - | - | - | 1 | - | |
| ---------------CAAGCTGAGTGTAAACCTGTGT-------------------------------------------------------- | 22 | - | - | - | - | 1 | - | |
| -------TCGGACCTCAAGCTGAGT-------------------------------------------------------------------- | 18 | - | - | - | - | 1 | - | |
| ------------------------TGTAAACCTGTGTACCTACT------------------------------------------------- | 20 | - | - | 1 | - | - | - | |
| rat | caggctaTCGGACCTCAAGCTGAGTGTAAACCTGTGTACctactacgtcccttctccaggtcagaaattccatagagaatgtctgcaggctga | |||||||
| ********************************************************************************************* | ||||||||
| rat | (((.((..((((((((.....((((....(((((((((.....)))).........))))).....))))....)))...))))).)).))). | 0.530 -18.10 | ||||||
| rat | chromosome:1:128271220:128271312:1 | intergenic |
sblock4194 [novel_cloningHIGH_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.025 | no | no | 0.32/0.45 | 18/24/0.70 | 0.0 7.0 | 0.7 7.8 | 53 38 | 0 0 | 10 10 | 0 0 | 15 21 | 9 -18 | 5arm 3arm | 1 1 | nd nd | 0.35 0.42 | 4 4 | 197 | 10 | 0 | -1 |
| reads | miRBase family seed | |||||||||||
| seed | ----------------UCCGAUG----------------------------------------------------------------------------------- | 117 | novel | |||||||||
| seed | ----------------------------------------------CAUAAUG----------------------------------------------------- | 14 | novel | |||||||||
| seed | ---------------------------------------------------------GUUGUGA------------------------------------------ | 14 | novel | |||||||||
| seed | -----------------------------------------------AUAAUGA---------------------------------------------------- | 14 | novel | |||||||||
| seed | --------------------------------------------------------UGUUGUG------------------------------------------- | 12 | novel | |||||||||
| seed | ----------------------------------------------------------------UUACUGA----------------------------------- | 9 | novel | |||||||||
| seed | ---------------------------------------------ACAUAAU------------------------------------------------------ | 4 | novel | |||||||||
| seed | -----------------CCGAUGA---------------------------------------------------------------------------------- | 4 | novel | |||||||||
| seed | ------------------------------------------------------------------ACUGAGG--------------------------------- | 3 | novel | |||||||||
| seed | ---------------------------------------------------------------AUUACUG------------------------------------ | 3 | novel | |||||||||
| seed | ---------------AUCCGAU------------------------------------------------------------------------------------ | 1 | novel | |||||||||
| seed | ------------------CGAUGAU--------------------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | --------------------------------------------------AUGAGCU------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ---------------ATCCGATGATTAAACCCTTC----------------------------------------------------------------------- | 20 | - | - | - | 1 | 9 | 7 | 1 | 3 | 5 | 26 | |
| ---------------ATCCGATGATTAAACCCT------------------------------------------------------------------------- | 18 | - | - | 1 | - | 10 | 6 | - | - | 1 | 6 | |
| ---------------ATCCGATGATTAAACCCTTCAC--------------------------------------------------------------------- | 22 | 1 | - | - | 1 | 8 | 3 | - | 2 | 2 | 3 | |
| ----------------------------------------------CATAATGAGCTGTTGTGAT----------------------------------------- | 19 | 2 | - | 2 | - | 6 | 1 | - | - | 3 | - | |
| ---------------ATCCGATGATTAAACCCTTCACTG------------------------------------------------------------------- | 24 | 1 | - | - | 2 | 1 | 1 | - | - | 4 | 3 | |
| ---------------------------------------------ACATAATGAGCTGTTGTGA------------------------------------------ | 19 | - | - | - | 4 | 1 | 1 | - | 1 | 2 | 1 | |
| --------------------------------------------------------TGTTGTGATTACTGAGGAAC------------------------------ | 20 | - | - | 1 | 1 | 1 | 2 | - | - | - | 1 | |
| ---------------ATCCGATGATTAAACCCTTCACT-------------------------------------------------------------------- | 23 | - | - | - | - | 1 | 1 | - | - | 3 | - | |
| ---------------------------------------------------------------ATTACTGAGGAACTGATGAG----------------------- | 20 | - | - | 1 | - | 4 | - | - | - | - | - | |
| --------------------------------------------------------TGTTGTGATTACTGAGGAACTGA--------------------------- | 23 | - | - | - | 1 | 2 | - | - | - | - | 1 | |
| -------------------------------------------------------CTGTTGTGATTACTGAGGAAC------------------------------ | 21 | - | - | - | 1 | - | - | 1 | - | - | 1 | |
| -------------------------------------------------------CTGTTGTGATTACTGAGGAACT----------------------------- | 22 | - | - | - | - | 3 | - | - | - | - | - | |
| --------------------------------------------------------TGTTGTGATTACTGAGGAA------------------------------- | 19 | 2 | - | - | - | 1 | - | - | - | - | - | |
| ---------------------------------------------------------------ATTACTGAGGAACTGATGAGG---------------------- | 21 | - | - | - | - | 2 | - | - | - | - | 1 | |
| --------------------------------------------CACATAATGAGCTGTTGTGA------------------------------------------ | 20 | - | - | - | - | - | 1 | - | - | 1 | - | |
| -------------------------------------------------------CTGTTGTGATTACTGAGGAACTGA--------------------------- | 24 | - | - | - | - | 1 | - | - | - | - | 1 | |
| -----------------------------------------------------------------TACTGAGGAACTGATGAGGA--------------------- | 20 | - | - | - | - | - | - | - | - | - | 2 | |
| -------------------------------------------------------CTGTTGTGATTACTGAGGAACTG---------------------------- | 23 | - | 1 | - | - | 1 | - | - | - | - | - | |
| --------------------------------------------CACATAATGAGCTGTTGTG------------------------------------------- | 19 | - | - | - | - | 1 | - | - | 1 | - | - | |
| ----------------TCCGATGATTAAACCCTTC----------------------------------------------------------------------- | 19 | 1 | - | - | - | - | - | - | - | 1 | - | |
| ----------------TCCGATGATTAAACCCTTCACTG------------------------------------------------------------------- | 23 | - | - | - | - | - | - | - | 2 | - | - | |
| --------------------------------------------------------------GATTACTGAGGAACTGATGAG----------------------- | 21 | - | - | 2 | - | - | - | - | - | - | - | |
| ---------------ATCCGATGATTAAACCCTT------------------------------------------------------------------------ | 19 | - | - | - | 1 | 1 | - | - | - | - | - | |
| ---------------ATCCGATGATTAAACCCTTCA---------------------------------------------------------------------- | 21 | - | - | - | - | 1 | - | - | - | 1 | - | |
| --------------------------------------------------------------GATTACTGAGGAACTGATGAGG---------------------- | 22 | - | - | - | - | 1 | - | - | - | - | - | |
| -----------------CCGATGATTAAACCCTTCACTG------------------------------------------------------------------- | 22 | - | 1 | - | - | - | - | - | - | - | - | |
| -------------------------------------------------AATGAGCTGTTGTGATTACTGAG---------------------------------- | 23 | - | - | - | 1 | - | - | - | - | - | - | |
| ---------------------------------------------ACATAATGAGCTGTTGTGAT----------------------------------------- | 20 | - | - | - | - | 1 | - | - | - | - | - | |
| -------------------------------------------------------CTGTTGTGATTACTGAGGAA------------------------------- | 20 | - | - | 1 | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------ATTACTGAGGAACTGATGAGGA--------------------- | 22 | - | - | - | - | 1 | - | - | - | - | - | |
| ---------------------------------------------ACATAATGAGCTGTTGTGATTAC-------------------------------------- | 23 | - | - | - | - | - | 1 | - | - | - | - | |
| ---------------------------------------------ACATAATGAGCTGTTGTGATTA--------------------------------------- | 22 | - | - | - | 1 | - | - | - | - | - | - | |
| --------------------------------------------------------TGTTGTGATTACTGAGGAACT----------------------------- | 21 | - | - | - | - | - | - | - | - | 1 | - | |
| ---------------------------------------------ACATAATGAGCTGTTGTG------------------------------------------- | 18 | - | - | - | - | 1 | - | - | - | - | - | |
| --------------TATCCGATGATTAAACCCTTC----------------------------------------------------------------------- | 21 | - | - | - | - | - | 1 | - | - | - | - | |
| -------------------------------------------------------CTGTTGTGATTACTGAGGA-------------------------------- | 19 | - | - | - | - | - | 1 | - | - | - | - | |
| -----------------------------------------------------------------TACTGAGGAACTGATGAGGAT-------------------- | 21 | - | - | - | - | 1 | - | - | - | - | - | |
| rat | ctcttgtagctgcatATCCGATGATTAAACCCTTCACtgctgttcacataatgagctgttgtgattactgaggaactgatgaggatgtgcaagctttactaaaggg | |||||||||||
| ********************************************************************************************************** | ||||||||||||
| rat | (((((..((((((((((((....((((...(((((((.((.(((((.....))))).)).))))......)))...))))..))))))))).)))......))))) | 1.000 -31.20 | ||||||||||
| rat | chromosome:14:10457359:10457464:1 | intergenic |
novel_cloningHIGH_multiarm_DicerNOK_nonpairedHIGH (3 loci)
sblock10088 [novel_cloningHIGH_multiarm_DicerNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.245 | no | no | 0.37/0.43 | 18/24/0.97 | 0.0 0.0 | 0.0 0.0 | 1 55 | 0 0 | 1 10 | 0 0 | 13 8 | 2 14 | 5arm 3arm | 1 1 | nd nd | 0.53 0.35 | 5 3 | 91 | 10 | 0 | 10 |
| reads | miRBase family seed | |||||||||||
| seed | -------------------------------------------------------CAAUGAC-------------------- | 80 | novel | |||||||||
| seed | -----------------------------------------------------------GACUUUU---------------- | 5 | novel | |||||||||
| seed | ------------------------------------------------------CCAAUGA--------------------- | 4 | novel | |||||||||
| seed | --------------CUUAAUG------------------------------------------------------------- | 1 | novel | |||||||||
| seed | --------------------------------------------------------AAUGACU------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------------------------------------------------CCAATGACTTTTCGTTCAGA-------- | 20 | 7 | 2 | 2 | 2 | 2 | 3 | 1 | 3 | 55 | 1 | |
| -----------------------------------------------------TCCAATGACTTTTCGTTCAGA-------- | 21 | - | - | - | 1 | - | - | - | - | 3 | - | |
| ----------------------------------------------------------TGACTTTTCGTTCAGATCCAAGAA | 24 | - | - | - | - | - | - | - | - | 4 | - | |
| ----------------------------------------------------------TGACTTTTCGTTCAGATCCAAGA- | 23 | 1 | - | - | - | - | - | - | - | - | - | |
| ------------------------------------------------------CCAATGACTTTTCGTTCAGATCC----- | 23 | - | - | - | - | - | - | - | 1 | - | - | |
| ------------------------------------------------------CCAATGACTTTTCGTTCA---------- | 18 | - | - | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------------------CAATGACTTTTCGTTCAGA-------- | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| -------------TCTTAATGGGTATCTGTAG-------------------------------------------------- | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| rat | ttgagcccaagtctcttaatgggtatctgtagttttttctgacttttaatttgtCCAATGACTTTTCGTTCAGAtccaagaa | |||||||||||
| ********************************************************************************** | ||||||||||||
| rat | ((((((..(((((......((((((.....((((......)))).......))))))..)))))...))))))......... | 0.820 -12.70 | ||||||||||
| rat | chromosome:6:122561201:122561282:-1 | intergenic |
sblock3341 [novel_cloningHIGH_multiarm_DicerNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.108 | no | no | 0.37/0.53 | 18/24/0.81 | 0.0 0.0 0.0 | 1.1 0.0 1.2 | 31 5 4 | 0 0 0 | 7 2 1 | 0 0 0 | 13 30 8 | 8 -1 15 | 5arm 3arm_loop 3arm | 2 2 2 | nd nd nd | 0.42 0.33 0.47 | 5 3 4 | 67 | 7 | 0 | -16 |
| reads | miRBase family seed | ||||||||
| seed | --------------CCUUUCU-------------------------------------------------------------------------- | 52 | novel | ||||||
| seed | ------------------------------------------------AGUGAUG---------------------------------------- | 9 | novel | ||||||
| seed | ----------------------------------------------------------------GACAAGU------------------------ | 4 | novel | ||||||
| seed | ---------------CUUUCUG------------------------------------------------------------------------- | 1 | novel | ||||||
| seed | -----------------UUCUGAA----------------------------------------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T4S2 | T5S1 | T5S2 | |||
| -------------TCCTTTCTGAACGTCTCCGAG------------------------------------------------------------- | 21 | 2 | 1 | 1 | 1 | 2 | 20 | - | |
| -------------TCCTTTCTGAACGTCTCCGAGTCT---------------------------------------------------------- | 24 | 1 | 1 | - | - | - | 11 | 1 | |
| -----------------------------------------------TAGTGATGTCAGGCTCTG------------------------------ | 18 | - | 1 | - | - | - | 5 | - | |
| -------------TCCTTTCTGAACGTCTCC---------------------------------------------------------------- | 18 | - | 2 | - | - | - | 3 | - | |
| -------------TCCTTTCTGAACGTCTCCGAGTC----------------------------------------------------------- | 23 | - | - | - | - | - | 4 | - | |
| ---------------------------------------------------------------TGACAAGTATTTTCAGCTGCGTTC-------- | 24 | - | - | - | - | - | 3 | - | |
| -------------TCCTTTCTGAACGTCTCCG--------------------------------------------------------------- | 19 | - | - | - | - | - | 1 | - | |
| -----------------------------------------------TAGTGATGTCAGGCTCTGACAAG------------------------- | 23 | - | - | - | - | - | 1 | - | |
| ----------------TTTCTGAACGTCTCCGAGTCT---------------------------------------------------------- | 21 | - | - | - | - | - | 1 | - | |
| --------------CCTTTCTGAACGTCTCCGAGTCT---------------------------------------------------------- | 23 | - | - | - | - | - | 1 | - | |
| -------------TCCTTTCTGAACGTCTCCGA-------------------------------------------------------------- | 20 | - | - | - | - | - | 1 | - | |
| -----------------------------------------------TAGTGATGTCAGGCTCTGACAAGT------------------------ | 24 | - | - | - | - | - | 1 | - | |
| -----------------------------------------------TAGTGATGTCAGGCTCTGAC---------------------------- | 20 | - | - | - | - | - | 1 | - | |
| ---------------------------------------------------------------TGACAAGTATTTTCAGCTG------------- | 19 | - | - | - | - | - | 1 | - | |
| rat | gcatcccagtcgcTCCTTTCTGAACGTCTCCGAGTCTaagttgctcttagtgatgtcaggctctgacaagtattttcagctgcgttcgggctgca | ||||||||
| *********************************************************************************************** | |||||||||
| rat | (((.(((...(((......((((((...((.((((((..((..((...))..))...)))))).))...))....))))..)))...))).))). | 0.850 -27.40 | |||||||
| rat | chromosome:12:44297997:44298091:-1 | intergenic |
sblock3611 [novel_cloningHIGH_multiarm_DicerNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.147 | no | no | 0.46/0.53 | 18/24/0.81 | 0.0 0.0 | 1.1 0.0 | 31 5 | 0 0 | 7 2 | 0 0 | 7 18 | 8 -1 | 5arm 3arm_loop | 2 2 | nd nd | 0.54 0.33 | 5 3 | 63 | 7 | 0 | -14 |
| reads | miRBase family seed | ||||||||
| seed | --------CCUUUCU-------------------------------------------------------------- | 52 | novel | ||||||
| seed | ------------------------------------------AGUGAUG---------------------------- | 9 | novel | ||||||
| seed | ---------CUUUCUG------------------------------------------------------------- | 1 | novel | ||||||
| seed | -----------UUCUGAA----------------------------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T4S2 | T5S1 | T5S2 | |||
| -------TCCTTTCTGAACGTCTCCGAG------------------------------------------------- | 21 | 2 | 1 | 1 | 1 | 2 | 20 | - | |
| -------TCCTTTCTGAACGTCTCCGAGTCT---------------------------------------------- | 24 | 1 | 1 | - | - | - | 11 | 1 | |
| -----------------------------------------TAGTGATGTCAGGCTCTG------------------ | 18 | - | 1 | - | - | - | 5 | - | |
| -------TCCTTTCTGAACGTCTCC---------------------------------------------------- | 18 | - | 2 | - | - | - | 3 | - | |
| -------TCCTTTCTGAACGTCTCCGAGTC----------------------------------------------- | 23 | - | - | - | - | - | 4 | - | |
| ----------TTTCTGAACGTCTCCGAGTCT---------------------------------------------- | 21 | - | - | - | - | - | 1 | - | |
| -------TCCTTTCTGAACGTCTCCG--------------------------------------------------- | 19 | - | - | - | - | - | 1 | - | |
| --------CCTTTCTGAACGTCTCCGAGTCT---------------------------------------------- | 23 | - | - | - | - | - | 1 | - | |
| -----------------------------------------TAGTGATGTCAGGCTCTGAC---------------- | 20 | - | - | - | - | - | 1 | - | |
| -------TCCTTTCTGAACGTCTCCGA-------------------------------------------------- | 20 | - | - | - | - | - | 1 | - | |
| -----------------------------------------TAGTGATGTCAGGCTCTGACAAG------------- | 23 | - | - | - | - | - | 1 | - | |
| -----------------------------------------TAGTGATGTCAGGCTCTGACAAGT------------ | 24 | - | - | - | - | - | 1 | - | |
| rat | cagtcgcTCCTTTCTGAACGTCTCCGAGTCTaagttgctcttagtgatgtcaggctctgacaagtattttcggctgc | ||||||||
| ***************************************************************************** | |||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000056932 ENSRNOG00000037566 RGD1560398_predicted | ||||||||
| rat | ((((((.......((....(((...((((((..((..((...))..))...)))))).))).))......)))))). | 0.700 -19.42 | |||||||
| rat | chromosome:12:43045033:43045109:1 | Same_strand|Intronic_non-coding|ENSRNOT00000056932|ENSRNOG00000037566 ## ENSRNOG00000037566|protein_coding|RGD1560398_predicted| |
novel_cloningHIGH_multiarm_Multihit_loopOverlap_nonpairedHIGH (3 loci)
sblock1494 [novel_cloningHIGH_multiarm_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.321 | no | no | 0.32/0.53 | 18/24/0.88 | 1.5 0.0 0.0 0.0 0.0 0.0 0.0 | 3.5 0.0 0.0 0.3 0.0 0.0 0.0 | 2 6 41 3 1 1 1 | 0 0 0 0 0 0 0 | 1 3 5 2 1 1 1 | 0 0 0 0 0 0 0 | 0 12 41 31 26 15 7 | 29 24 -2 9 14 20 33 | 5arm 5arm 3arm_loop 3arm 3arm 3arm 3arm | 46 46 46 46 46 46 46 | nd nd nd nd nd nd nd | 0.46 0.50 0.50 0.50 0.32 0.42 0.68 | 9 4 5 5 3 6 13 | 67 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | -----------------------------------------------------------GAGCCUG----------------------------------------------------- | 50 | novel | ||||||
| seed | -------------AAAUCAG--------------------------------------------------------------------------------------------------- | 8 | novel | ||||||
| seed | ----------------------------------------------------------------------GUGAAGC------------------------------------------ | 3 | novel | ||||||
| seed | ------------------------------------------------------------AGCCUGU---------------------------------------------------- | 1 | novel | ||||||
| seed | ---------------------------------------------------------------------------GCAAUUC------------------------------------- | 1 | novel | ||||||
| seed | ----------------------------------------------------------------------------------------------UGCUGUU------------------ | 1 | novel | ||||||
| seed | -AGUCCUA--------------------------------------------------------------------------------------------------------------- | 1 | novel | ||||||
| seed | ---------------------------------------------------------------------------------CCUGUGU------------------------------- | 1 | novel | ||||||
| seed | ----CCUAGAG------------------------------------------------------------------------------------------------------------ | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T4S1 | T5S1 | T5S2 | |||
| ----------------------------------------------------------TGAGCCTGTGTTGTGAAGCA----------------------------------------- | 20 | 1 | 1 | - | - | 2 | 41 | 2 | |
| ------------GAAATCAGCAAGGGTAGAGA--------------------------------------------------------------------------------------- | 20 | - | - | 1 | - | - | 6 | - | |
| ---------------------------------------------------------------------TGTGAAGCAATTCCTGTGT------------------------------- | 19 | - | - | - | - | - | 2 | - | |
| ---------------------------------------------------------------------------------------------TTGCTGTTACATTAAGCAA------- | 19 | - | 1 | - | - | - | - | - | |
| -----------------------------------------------------------GAGCCTGTGTTGTGAAGCA----------------------------------------- | 19 | - | - | - | - | - | 1 | - | |
| --------------------------------------------------------------------------------TCCTGTGTATAACTTGCTGTTACA--------------- | 24 | - | - | - | - | - | 1 | - | |
| TAGTCCTAGAGGGAAATCAG--------------------------------------------------------------------------------------------------- | 20 | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------------TGAGCCTGTGTTGTGAAG------------------------------------------- | 18 | - | - | - | - | - | 1 | - | |
| ------------GAAATCAGCAAGGGTAGAGAAT------------------------------------------------------------------------------------- | 22 | 1 | - | - | - | - | - | - | |
| --------------------------------------------------------------------------AGCAATTCCTGTGTATAAC-------------------------- | 19 | 1 | - | - | - | - | - | - | |
| ----------------------------------------------------------TGAGCCTGTGTTGTGAAGC------------------------------------------ | 19 | - | - | - | - | - | 1 | - | |
| ---------------------------------------------------------------------TGTGAAGCAATTCCTGTG-------------------------------- | 18 | - | - | - | 1 | - | - | - | |
| ----------------------------------------------------------TGAGCCTGTGTTGTGAAGCAA---------------------------------------- | 21 | - | - | - | - | - | 1 | - | |
| ---TCCTAGAGGGAAATCAGCAAGGGT-------------------------------------------------------------------------------------------- | 24 | - | - | - | - | - | 1 | - | |
| rat | tagtcctagagggaaatcagcaagggtagagaatgggactgtaactggacaaagctgcTGAGCCTGTGTTGTGAAGCAattcctgtgtataacttgctgttacattaagcaataggatg | ||||||||
| *********************************************************************************************************************** | |||||||||
| --------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | ||||||||
| rat | ..((((((.........(((((((..((....((((((.(((.....((((..(((....)))...)))).....)))..))))))...)).))))))).............)))))). | 0.850 -27.85 | |||||||
| rat | chromosome:1:51597087:51597205:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
sblock1656 [novel_cloningHIGH_multiarm_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.321 | no | no | 0.32/0.53 | 18/24/0.88 | 1.5 0.0 0.0 0.0 0.0 0.0 0.0 | 3.5 0.0 0.0 0.3 0.0 0.0 0.0 | 2 6 41 3 1 1 1 | 0 0 0 0 0 0 0 | 1 3 5 2 1 1 1 | 0 0 0 0 0 0 0 | 0 12 41 31 26 15 7 | 29 24 -2 9 14 20 33 | 5arm 5arm 3arm_loop 3arm 3arm 3arm 3arm | 46 46 46 46 46 46 46 | nd nd nd nd nd nd nd | 0.46 0.50 0.50 0.50 0.32 0.42 0.68 | 9 4 5 5 3 6 13 | 67 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | -----------------------------------------------------------GAGCCUG----------------------------------------------------- | 50 | novel | ||||||
| seed | -------------AAAUCAG--------------------------------------------------------------------------------------------------- | 8 | novel | ||||||
| seed | ----------------------------------------------------------------------GUGAAGC------------------------------------------ | 3 | novel | ||||||
| seed | ------------------------------------------------------------AGCCUGU---------------------------------------------------- | 1 | novel | ||||||
| seed | ---------------------------------------------------------------------------GCAAUUC------------------------------------- | 1 | novel | ||||||
| seed | ----------------------------------------------------------------------------------------------UGCUGUU------------------ | 1 | novel | ||||||
| seed | -AGUCCUA--------------------------------------------------------------------------------------------------------------- | 1 | novel | ||||||
| seed | ---------------------------------------------------------------------------------CCUGUGU------------------------------- | 1 | novel | ||||||
| seed | ----CCUAGAG------------------------------------------------------------------------------------------------------------ | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T4S1 | T5S1 | T5S2 | |||
| ----------------------------------------------------------TGAGCCTGTGTTGTGAAGCA----------------------------------------- | 20 | 1 | 1 | - | - | 2 | 41 | 2 | |
| ------------GAAATCAGCAAGGGTAGAGA--------------------------------------------------------------------------------------- | 20 | - | - | 1 | - | - | 6 | - | |
| ---------------------------------------------------------------------TGTGAAGCAATTCCTGTGT------------------------------- | 19 | - | - | - | - | - | 2 | - | |
| ---------------------------------------------------------------------------------------------TTGCTGTTACATTAAGCAA------- | 19 | - | 1 | - | - | - | - | - | |
| -----------------------------------------------------------GAGCCTGTGTTGTGAAGCA----------------------------------------- | 19 | - | - | - | - | - | 1 | - | |
| --------------------------------------------------------------------------------TCCTGTGTATAACTTGCTGTTACA--------------- | 24 | - | - | - | - | - | 1 | - | |
| TAGTCCTAGAGGGAAATCAG--------------------------------------------------------------------------------------------------- | 20 | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------------TGAGCCTGTGTTGTGAAG------------------------------------------- | 18 | - | - | - | - | - | 1 | - | |
| ------------GAAATCAGCAAGGGTAGAGAAT------------------------------------------------------------------------------------- | 22 | 1 | - | - | - | - | - | - | |
| --------------------------------------------------------------------------AGCAATTCCTGTGTATAAC-------------------------- | 19 | 1 | - | - | - | - | - | - | |
| ----------------------------------------------------------TGAGCCTGTGTTGTGAAGC------------------------------------------ | 19 | - | - | - | - | - | 1 | - | |
| ---------------------------------------------------------------------TGTGAAGCAATTCCTGTG-------------------------------- | 18 | - | - | - | 1 | - | - | - | |
| ----------------------------------------------------------TGAGCCTGTGTTGTGAAGCAA---------------------------------------- | 21 | - | - | - | - | - | 1 | - | |
| ---TCCTAGAGGGAAATCAGCAAGGGT-------------------------------------------------------------------------------------------- | 24 | - | - | - | - | - | 1 | - | |
| rat | tagtcctagagggaaatcagcaagggtagagaatgggactgtaactggacaaagctgcTGAGCCTGTGTTGTGAAGCAattcctgtgtataacttgctgttacattaagcaataggatg | ||||||||
| *********************************************************************************************************************** | |||||||||
| --------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000059909 ENSRNOG00000030267 RGD1561185_predicted | ||||||||
| --------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000059908 ENSRNOG00000030267 RGD1561185_predicted | ||||||||
| rat | ..((((((.........(((((((..((....((((((.(((.....((((..(((....)))...)))).....)))..))))))...)).))))))).............)))))). | 0.850 -27.85 | |||||||
| rat | chromosome:1:52748191:52748309:1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000059908|ENSRNOG00000030267 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000048991|ENSRNOG00000030267 ## ENSRNOG00000030267|protein_coding|RGD1561185_predicted| |
sblock320 [novel_cloningHIGH_multiarm_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.321 | no | no | 0.32/0.53 | 18/24/0.88 | 1.5 0.0 0.0 0.0 0.0 0.0 0.0 | 3.5 0.0 0.0 0.3 0.0 0.0 0.0 | 2 6 41 3 1 1 1 | 0 0 0 0 0 0 0 | 1 3 5 2 1 1 1 | 0 0 0 0 0 0 0 | 0 12 41 31 26 15 7 | 29 24 -2 9 14 20 33 | 5arm 5arm 3arm_loop 3arm 3arm 3arm 3arm | 46 46 46 46 46 46 46 | nd nd nd nd nd nd nd | 0.46 0.50 0.50 0.50 0.32 0.42 0.68 | 9 4 5 5 3 6 13 | 67 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | -----------------------------------------------------------GAGCCUG----------------------------------------------------- | 50 | novel | ||||||
| seed | -------------AAAUCAG--------------------------------------------------------------------------------------------------- | 8 | novel | ||||||
| seed | ----------------------------------------------------------------------GUGAAGC------------------------------------------ | 3 | novel | ||||||
| seed | ------------------------------------------------------------AGCCUGU---------------------------------------------------- | 1 | novel | ||||||
| seed | ---------------------------------------------------------------------------GCAAUUC------------------------------------- | 1 | novel | ||||||
| seed | ----------------------------------------------------------------------------------------------UGCUGUU------------------ | 1 | novel | ||||||
| seed | -AGUCCUA--------------------------------------------------------------------------------------------------------------- | 1 | novel | ||||||
| seed | ---------------------------------------------------------------------------------CCUGUGU------------------------------- | 1 | novel | ||||||
| seed | ----CCUAGAG------------------------------------------------------------------------------------------------------------ | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T4S1 | T5S1 | T5S2 | |||
| ----------------------------------------------------------TGAGCCTGTGTTGTGAAGCA----------------------------------------- | 20 | 1 | 1 | - | - | 2 | 41 | 2 | |
| ------------GAAATCAGCAAGGGTAGAGA--------------------------------------------------------------------------------------- | 20 | - | - | 1 | - | - | 6 | - | |
| ---------------------------------------------------------------------TGTGAAGCAATTCCTGTGT------------------------------- | 19 | - | - | - | - | - | 2 | - | |
| ---------------------------------------------------------------------------------------------TTGCTGTTACATTAAGCAA------- | 19 | - | 1 | - | - | - | - | - | |
| -----------------------------------------------------------GAGCCTGTGTTGTGAAGCA----------------------------------------- | 19 | - | - | - | - | - | 1 | - | |
| --------------------------------------------------------------------------------TCCTGTGTATAACTTGCTGTTACA--------------- | 24 | - | - | - | - | - | 1 | - | |
| TAGTCCTAGAGGGAAATCAG--------------------------------------------------------------------------------------------------- | 20 | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------------TGAGCCTGTGTTGTGAAG------------------------------------------- | 18 | - | - | - | - | - | 1 | - | |
| ------------GAAATCAGCAAGGGTAGAGAAT------------------------------------------------------------------------------------- | 22 | 1 | - | - | - | - | - | - | |
| --------------------------------------------------------------------------AGCAATTCCTGTGTATAAC-------------------------- | 19 | 1 | - | - | - | - | - | - | |
| ----------------------------------------------------------TGAGCCTGTGTTGTGAAGC------------------------------------------ | 19 | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------------TGAGCCTGTGTTGTGAAGCAA---------------------------------------- | 21 | - | - | - | - | - | 1 | - | |
| ---------------------------------------------------------------------TGTGAAGCAATTCCTGTG-------------------------------- | 18 | - | - | - | 1 | - | - | - | |
| ---TCCTAGAGGGAAATCAGCAAGGGT-------------------------------------------------------------------------------------------- | 24 | - | - | - | - | - | 1 | - | |
| rat | tagtcctagagggaaatcagcaagggtagagaatgggactgtaactggacaaagctgcTGAGCCTGTGTTGTGAAGCAattcctgtgtataacttgctgttacattaagcaataggatg | ||||||||
| *********************************************************************************************************************** | |||||||||
| rat | ..((((((.........(((((((..((....((((((.(((.....((((..(((....)))...)))).....)))..))))))...)).))))))).............)))))). | 0.850 -27.85 | |||||||
| rat | chromosome:1:50356198:50356316:-1 | intergenic |
novel_cloningHIGH_multiarm_loopOverlap (3 loci)
block1600645 [novel_cloningHIGH_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.070 | no | no | 0.33/0.44 | 18/25/0.94 | 0.0 0.0 0.0 | 0.0 0.0 3.0 | 1 48 3 | 0 0 0 | 1 6 1 | 0 0 0 | 18 26 0 | -12 -21 3 | 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.30 0.25 0.26 | 3 3 3 | 72 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | ---------------------------ACCAAGU-------------------------- | 63 | novel | |||||
| seed | ----------------------------CCAAGUA------------------------- | 4 | novel | |||||
| seed | ------------------------------------GCAAAUG----------------- | 3 | novel | |||||
| seed | --------------------------------GUAUGCA--------------------- | 1 | novel | |||||
| seed | -------------------UGCCUCA---------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S2 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --------------------------TACCAAGTATGCAAATGATCCCTT---------- | 24 | 1 | 1 | - | 2 | 48 | - | |
| --------------------------TACCAAGTATGCAAATGATCCCT----------- | 23 | - | - | - | - | 4 | 2 | |
| --------------------------TACCAAGTATGCAAATGATC-------------- | 20 | 1 | - | - | - | 3 | - | |
| ---------------------------ACCAAGTATGCAAATGATCCCTT---------- | 23 | 1 | - | - | - | 3 | - | |
| --------------------------TACCAAGTATGCAAATGA---------------- | 18 | - | - | 1 | - | - | - | |
| -----------------------------------TGCAAATGATCCCTTATAGGAG--- | 22 | - | - | - | - | 1 | - | |
| -----------------------------------TGCAAATGATCCCTTATAGGAGAGG | 25 | - | - | - | - | 1 | - | |
| ------------------TTGCCTCATACCAAGTATGCAAA------------------- | 23 | - | - | - | - | 1 | - | |
| -------------------------------AGTATGCAAATGATCCCTT---------- | 19 | - | - | - | - | - | 1 | |
| -----------------------------------TGCAAATGATCCCTTATAG------ | 19 | - | - | - | - | 1 | - | |
| rat | ttcccgagagggacccacttgcctcaTACCAAGTATGCAAATGATCCCTTataggagagg | |||||||
| ************************************************************ | ||||||||
| rat | (((((..((((((..((.((((...((((...)))))))).)).))))))...)).))). | 0.970 -16.10 | ||||||
| rat | chromosome:4:164245964:164246023:-1 | intergenic |
block1751060 [novel_cloningHIGH_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.858 | no | no | 0.50/0.58 | 18/24/0.90 | 1.8 0.0 | 3.2 0.0 | 8 39 | 0 0 | 4 10 | 0 0 | 28 41 | 3 -5 | 5arm 5arm_loop_3arm | 2 2 | nd nd | 0.28 0.43 | 2 4 | 86 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | ------------------------------------------UCCUUUU--------------------------------------------------------------------- | 60 | novel | |||||||||
| seed | -------------------------------------------CCUUUUC-------------------------------------------------------------------- | 11 | novel | |||||||||
| seed | -------------------------------CAGCCAG-------------------------------------------------------------------------------- | 3 | novel | |||||||||
| seed | -----------------------------CUCAGCC---------------------------------------------------------------------------------- | 2 | novel | |||||||||
| seed | ---------------------------------------CCUUCCU------------------------------------------------------------------------ | 2 | novel | |||||||||
| seed | --------------------------------------UCCUUCC------------------------------------------------------------------------- | 2 | novel | |||||||||
| seed | ----------------------------------------------UUUCCAG----------------------------------------------------------------- | 1 | novel | |||||||||
| seed | ------------------------------UCAGCCA--------------------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | --------------------------------AGCCAGU------------------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | -------------------------------------GUCCUUC-------------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | --------------------------------------------CUUUUCC------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | ---------------------------------GCCAGUC------------------------------------------------------------------------------ | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------------------TTCCTTTTCCAGGCTCCTGTG-------------------------------------------------------- | 21 | 5 | 2 | 3 | 4 | 1 | 1 | 2 | 1 | 39 | 2 | |
| ------------------------------------------TCCTTTTCCAGGCTCCTGTG-------------------------------------------------------- | 20 | 1 | - | 2 | 1 | - | - | - | - | 6 | - | |
| ----------------------------CCTCAGCCAGTCCTTCCTT----------------------------------------------------------------------- | 19 | - | - | - | - | - | - | - | - | 1 | 1 | |
| --------------------------------------TCCTTCCTTTTCCAGGCTCC------------------------------------------------------------ | 20 | - | - | - | - | - | - | - | - | - | 2 | |
| ------------------------------TCAGCCAGTCCTTCCTTTTCCAGG---------------------------------------------------------------- | 24 | 1 | - | - | - | - | - | - | - | 1 | - | |
| ------------------------------TCAGCCAGTCCTTCCTTT---------------------------------------------------------------------- | 18 | 1 | - | - | - | - | - | - | - | - | - | |
| -------------------------------------GTCCTTCCTTTTCCAGGC--------------------------------------------------------------- | 18 | - | - | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------CCTTTTCCAGGCTCCTGTG-------------------------------------------------------- | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------CTCAGCCAGTCCTTCCTTT---------------------------------------------------------------------- | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| ------------------------------------------TCCTTTTCCAGGCTCCTGT--------------------------------------------------------- | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| -------------------------------------GTCCTTCCTTTTCCAGGCTC------------------------------------------------------------- | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------AGCCAGTCCTTCCTTTTCC------------------------------------------------------------------- | 19 | - | - | - | - | - | - | - | - | - | 1 | |
| ---------------------------------------------TTTTCCAGGCTCCTGTGGG------------------------------------------------------ | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| -------------------------------CAGCCAGTCCTTCCTTTTCCAG----------------------------------------------------------------- | 22 | - | - | - | - | - | - | 1 | - | - | - | |
| ------------------------------------AGTCCTTCCTTTTCCAGGCTC------------------------------------------------------------- | 21 | - | - | - | - | - | - | - | 1 | - | - | |
| rat | cgatgcccagatgatgcagacagccccacctcagccagtccTTCCTTTTCCAGGCTCCTGTGggccttcaacagtcggggcgatccgttgggtcggtcgtcgccacttcggaggaatc | |||||||||||
| ********************************************************************************************************************** | ||||||||||||
| rat | .(((.((..((....((.(((.(((..(((.((((..(((((..((.((..((((((....))))))..)).))..))))).....))))))).))).)))))....))...)).))) | 0.490 -35.10 | ||||||||||
| rat | chromosome:5:79240233:79240350:-1 | intergenic |
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