other hairpins
novel_cloningHIGH_multiarm_loopOverlap (3 loci)
block1848456 [novel_cloningHIGH_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.858 | no | no | 0.50/0.58 | 18/24/0.90 | 1.8 0.0 | 3.2 0.0 | 8 39 | 0 0 | 4 10 | 0 0 | 28 41 | 3 -5 | 5arm 5arm_loop_3arm | 2 2 | nd nd | 0.28 0.43 | 2 4 | 86 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | ------------------------------------------UCCUUUU--------------------------------------------------------------------- | 60 | novel | |||||||||
| seed | -------------------------------------------CCUUUUC-------------------------------------------------------------------- | 11 | novel | |||||||||
| seed | -------------------------------CAGCCAG-------------------------------------------------------------------------------- | 3 | novel | |||||||||
| seed | -----------------------------CUCAGCC---------------------------------------------------------------------------------- | 2 | novel | |||||||||
| seed | ---------------------------------------CCUUCCU------------------------------------------------------------------------ | 2 | novel | |||||||||
| seed | --------------------------------------UCCUUCC------------------------------------------------------------------------- | 2 | novel | |||||||||
| seed | ----------------------------------------------UUUCCAG----------------------------------------------------------------- | 1 | novel | |||||||||
| seed | ------------------------------UCAGCCA--------------------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | --------------------------------AGCCAGU------------------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | -------------------------------------GUCCUUC-------------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | --------------------------------------------CUUUUCC------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | ---------------------------------GCCAGUC------------------------------------------------------------------------------ | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------------------TTCCTTTTCCAGGCTCCTGTG-------------------------------------------------------- | 21 | 5 | 2 | 3 | 4 | 1 | 1 | 2 | 1 | 39 | 2 | |
| ------------------------------------------TCCTTTTCCAGGCTCCTGTG-------------------------------------------------------- | 20 | 1 | - | 2 | 1 | - | - | - | - | 6 | - | |
| ----------------------------CCTCAGCCAGTCCTTCCTT----------------------------------------------------------------------- | 19 | - | - | - | - | - | - | - | - | 1 | 1 | |
| --------------------------------------TCCTTCCTTTTCCAGGCTCC------------------------------------------------------------ | 20 | - | - | - | - | - | - | - | - | - | 2 | |
| ------------------------------TCAGCCAGTCCTTCCTTTTCCAGG---------------------------------------------------------------- | 24 | 1 | - | - | - | - | - | - | - | 1 | - | |
| ------------------------------TCAGCCAGTCCTTCCTTT---------------------------------------------------------------------- | 18 | 1 | - | - | - | - | - | - | - | - | - | |
| -------------------------------------GTCCTTCCTTTTCCAGGC--------------------------------------------------------------- | 18 | - | - | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------CCTTTTCCAGGCTCCTGTG-------------------------------------------------------- | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------CTCAGCCAGTCCTTCCTTT---------------------------------------------------------------------- | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| ------------------------------------------TCCTTTTCCAGGCTCCTGT--------------------------------------------------------- | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| -------------------------------------GTCCTTCCTTTTCCAGGCTC------------------------------------------------------------- | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------AGCCAGTCCTTCCTTTTCC------------------------------------------------------------------- | 19 | - | - | - | - | - | - | - | - | - | 1 | |
| ---------------------------------------------TTTTCCAGGCTCCTGTGGG------------------------------------------------------ | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| -------------------------------CAGCCAGTCCTTCCTTTTCCAG----------------------------------------------------------------- | 22 | - | - | - | - | - | - | 1 | - | - | - | |
| ------------------------------------AGTCCTTCCTTTTCCAGGCTC------------------------------------------------------------- | 21 | - | - | - | - | - | - | - | 1 | - | - | |
| rat | cgatgcccagatgatgcagacagccccacctcagccagtccTTCCTTTTCCAGGCTCCTGTGggccttcaacagtcggggcgatccgttgggtcggtcgtcgccacttcggaggaatc | |||||||||||
| ********************************************************************************************************************** | ||||||||||||
| rat | .(((.((..((....((.(((.(((..(((.((((..(((((..((.((..((((((....))))))..)).))..))))).....))))))).))).)))))....))...)).))) | 0.490 -35.10 | ||||||||||
| rat | chromosome:5:79242728:79242845:1 | intergenic |
novel_cloningOK_5varHIGH_bulgeHIGH (3 loci)
block1060626 [novel_cloningOK_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.023 | no | no | 0.48/0.62 | 20/26/0.81 | 4.2 | 2.8 | 11 | 0 | 2 | 0 | 12 | 9 | 5arm | 1 | nd | 0.29 | 4 | 16 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------GGGAAGA--------------------------------------------------------------------------------- | 5 | novel | |
| seed | --------------AAGCAUG--------------------------------------------------------------------------------------- | 5 | novel | |
| seed | -------------GAAGCAU---------------------------------------------------------------------------------------- | 4 | novel | |
| seed | -------------------UGGGAAG---------------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------AGGAAGC------------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -------------------TGGGAAGAAAGCCTTCTGCAG-------------------------------------------------------------------- | 21 | - | 4 | |
| -------------GAAGCATGGGAAGAAAGCCTTCTG----------------------------------------------------------------------- | 24 | 1 | 3 | |
| ------------GGAAGCATGGGAAGAAAGCC---------------------------------------------------------------------------- | 20 | - | 2 | |
| ------------GGAAGCATGGGAAGAAAGCCTTCTG----------------------------------------------------------------------- | 25 | - | 2 | |
| ------------------ATGGGAAGAAAGCCTTCTGCA--------------------------------------------------------------------- | 21 | - | 1 | |
| -------------------TGGGAAGAAAGCCTTCTGCAGGGCCC--------------------------------------------------------------- | 26 | - | 1 | |
| -------------GAAGCATGGGAAGAAAGCCT--------------------------------------------------------------------------- | 20 | - | 1 | |
| ----------CAGGAAGCATGGGAAGAAAG------------------------------------------------------------------------------ | 20 | - | 1 | |
| rat | gcatccccgccaGGAAGCATGGGAAGAAAGCCTTCTGCAGggccctccacaaccctggggggccggggcggggaggcttgtcactcttgaggtgcctggctctgaagc | |||
| ************************************************************************************************************ | ||||
| rat | ((.((...((((((...((.(((....(((((((((((..(((((((((......)))))))))...))))).))))))....))).)).....))))))...)).)) | 0.970 -52.10 | ||
| rat | chromosome:20:5511611:5511718:-1 | intergenic |
block1061026 [novel_cloningOK_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.043 | no | no | 0.45/0.60 | 20/24/1.00 | 5.4 | 5.7 | 12 | 0 | 2 | 0 | 17 | 0 | 3arm | 1 | nd | 0.24 | 4 | 12 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------------AAGACCA--------------------------------- | 5 | novel | |
| seed | --------------------------------------------------------------GCCCUUU---------------------------------------- | 3 | novel | |
| seed | ------------------------------------------------------------------------ACCAAUG------------------------------ | 2 | novel | |
| seed | -------------------------------------------------------------------UUAAGAC----------------------------------- | 2 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| --------------------------------------------------------------------TAAGACCAATGGACCAGGAG--------------------- | 20 | - | 2 | |
| -------------------------------------------------------------TGCCCTTTAAGACCAATGGAC--------------------------- | 21 | - | 2 | |
| --------------------------------------------------------------------TAAGACCAATGGACCAGGAGC-------------------- | 21 | - | 2 | |
| -----------------------------------------------------------------------GACCAATGGACCAGGAGCAG------------------ | 20 | - | 2 | |
| ------------------------------------------------------------------TTTAAGACCAATGGACCAGGAG--------------------- | 22 | - | 1 | |
| -------------------------------------------------------------TGCCCTTTAAGACCAATGGA---------------------------- | 20 | 1 | - | |
| --------------------------------------------------------------------TAAGACCAATGGACCAGGAGCAGA----------------- | 24 | - | 1 | |
| ------------------------------------------------------------------TTTAAGACCAATGGACCAGGAGC-------------------- | 23 | - | 1 | |
| rat | actgacttccattggcgtgttgatctctaggctgaggagcctgtctgtgaagggtacactcTGCCCTTTAAGACCAATGGACCAGGAGCAGAgggagccaggaggacag | |||
| ************************************************************************************************************* | ||||
| rat | .(((.(((((..((((.......(((((..(((..((..((.((((.(((((((((.....)))))))))))))....)).))...)))..)))))))))))))).))) | 0.600 -39.51 | ||
| rat | chromosome:20:5525260:5525368:-1 | intergenic |
block1093548 [novel_cloningOK_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.145 | no | no | 0.32/0.40 | 18/24/0.80 | 0.0 3.2 | 0.0 5.2 | 8 8 | 0 0 | 2 2 | 0 0 | 3 9 | 16 3 | 5arm 5arm | 1 1 | nd nd | 0.33 0.25 | 4 4 | 20 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ----ACCAAUG----------------------------------------------------------------------------- | 11 | novel | ||
| seed | ----------GACUUGU----------------------------------------------------------------------- | 4 | novel | ||
| seed | -----------------AGGAAGA---------------------------------------------------------------- | 3 | novel | ||
| seed | ---UACCAAU------------------------------------------------------------------------------ | 1 | novel | ||
| seed | ---------------GUAGGAA------------------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ---TACCAATGACTTGTAGGAAGA---------------------------------------------------------------- | 21 | - | - | 8 | |
| ---TACCAATGACTTGTAGGAAG----------------------------------------------------------------- | 20 | - | - | 2 | |
| --------------TGTAGGAAGATTTTTGAGGTCTG--------------------------------------------------- | 23 | - | - | 1 | |
| ----------------TAGGAAGATTTTTGAGGT------------------------------------------------------ | 18 | - | - | 1 | |
| ----------------TAGGAAGATTTTTGAGGTC----------------------------------------------------- | 19 | - | - | 1 | |
| ---------TGACTTGTAGGAAGATTTTTGA--------------------------------------------------------- | 22 | - | 1 | - | |
| ---TACCAATGACTTGTAGGAA------------------------------------------------------------------ | 19 | 1 | - | - | |
| ---------TGACTTGTAGGAAGATTTTTGAGG------------------------------------------------------- | 24 | - | - | 1 | |
| ----------------TAGGAAGATTTTTGAGGTCT---------------------------------------------------- | 20 | - | - | 1 | |
| ---------TGACTTGTAGGAAGATTTT------------------------------------------------------------ | 19 | - | - | 1 | |
| ---------TGACTTGTAGGAAGATTTTTGAG-------------------------------------------------------- | 23 | - | 1 | - | |
| --TTACCAATGACTTGTAGGAAGA---------------------------------------------------------------- | 22 | - | - | 1 | |
| rat | tctTACCAATGACTTGTAGGAAGAtttttgaggtctggccaaatgaggccccgcacctgcaaagggtctgtagggacttggctgaggt | ||||
| **************************************************************************************** | |||||
| rat | (((((((((...((((((((....((((((((((..((((......))))....)))).)))))).))))))))...)))).))))). | 0.620 -27.20 | |||
| rat | chromosome:20:5539893:5539980:1 | intergenic |
novel_cloningOK_5varHIGH_nonpairedHIGH (3 loci)
block1848524 [novel_cloningOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.190 | no | no | 0.50/0.63 | 18/24/0.79 | 0.3 1.5 | 0.0 1.8 | 6 4 | 0 0 | 3 1 | 0 0 | 8 17 | 17 7 | 5arm 5arm | 1 1 | nd nd | 0.46 0.32 | 7 3 | 14 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ----------CAGCACA----------------------------------------------------------------------------------------- | 4 | novel | ||
| seed | ------------GCACAGA--------------------------------------------------------------------------------------- | 3 | novel | ||
| seed | ------------------ACAAGAG--------------------------------------------------------------------------------- | 2 | novel | ||
| seed | ---------UCAGCAC------------------------------------------------------------------------------------------ | 2 | novel | ||
| seed | --------------------AAGAGAA------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ----------------------GAGAACC----------------------------------------------------------------------------- | 1 | novel | ||
| seed | -------------CACAGAC-------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ---------TCAGCACAGACAAGAGAACCTGG-------------------------------------------------------------------------- | 23 | - | - | 4 | |
| --------CTCAGCACAGACAAGAGAACCTGG-------------------------------------------------------------------------- | 24 | - | - | 2 | |
| -----------AGCACAGACAAGAGAACCTG--------------------------------------------------------------------------- | 20 | 1 | - | 1 | |
| -----------------GACAAGAGAACCTGGCGGCA--------------------------------------------------------------------- | 20 | - | - | 1 | |
| ---------------------AGAGAACCTGGCGGCAGGGAT---------------------------------------------------------------- | 21 | - | - | 1 | |
| -------------------CAAGAGAACCTGGCGGCAG-------------------------------------------------------------------- | 19 | - | - | 1 | |
| -----------------GACAAGAGAACCTGGCGGCAG-------------------------------------------------------------------- | 21 | - | - | 1 | |
| -----------AGCACAGACAAGAGAACC----------------------------------------------------------------------------- | 18 | - | 1 | - | |
| ------------GCACAGACAAGAGAACCTG--------------------------------------------------------------------------- | 19 | - | - | 1 | |
| rat | caaggagaCTCAGCACAGACAAGAGAACCTGGcggcagggatggcggtgcctcccacacattgcctttgccccgattgccttggcatcttggcatttatgaccttg | ||||
| ********************************************************************************************************** | |||||
| rat | (((((....(((.......(((((...((.(((((..(((..(((((((.........))))))).....)))..)))))..))..))))).......)))))))) | 0.820 -33.34 | |||
| rat | chromosome:5:79247199:79247304:1 | intergenic |
block2311843 [novel_cloningOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.032 | no | no | 0.39/0.53 | 18/26/0.82 | 1.7 | 1.4 | 21 | 0 | 8 | 0 | 12 | 6 | 3arm | 1 | nd | 0.35 | 2 | 33 | 8 | na | na |
| reads | miRBase family seed | |||||||||
| seed | ---------------------------------------------------------------------UCCUCAG---------------------------------- | 14 | novel | |||||||
| seed | ----------------------------------------------------------------------CCUCAGG--------------------------------- | 13 | novel | |||||||
| seed | -------------------------------------------------------------------------------CAACAGU------------------------ | 3 | novel | |||||||
| seed | --------------------------------------------------------------------------AGGCUCA----------------------------- | 2 | novel | |||||||
| seed | -------------------------------------------------------------------------CAGGCUC------------------------------ | 1 | miR-344/484 | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S2 | T4S1 | T4S2 | T5S1 | |||
| --------------------------------------------------------------------TTCCTCAGGCTCAACAGTTCA--------------------- | 21 | 3 | 2 | 1 | 1 | - | - | - | 6 | |
| ---------------------------------------------------------------------TCCTCAGGCTCAACAGTTCA--------------------- | 20 | 1 | - | - | - | 1 | 1 | - | 6 | |
| ------------------------------------------------------------------------------TCAACAGTTCATTAGACGTC------------ | 20 | - | - | - | - | - | - | - | 2 | |
| -------------------------------------------------------------------------CAGGCTCAACAGTTCATTAGAC--------------- | 22 | - | - | - | - | - | - | - | 2 | |
| ---------------------------------------------------------------------TCCTCAGGCTCAACAGTTCATTAGAC--------------- | 26 | - | - | - | - | - | - | 1 | 1 | |
| --------------------------------------------------------------------TTCCTCAGGCTCAACAGTTC---------------------- | 20 | - | - | - | - | - | - | - | 1 | |
| ---------------------------------------------------------------------TCCTCAGGCTCAACAGTTC---------------------- | 19 | - | - | - | 1 | - | - | - | - | |
| ---------------------------------------------------------------------TCCTCAGGCTCAACAGTTCATTAGA---------------- | 25 | - | - | - | - | - | 1 | - | - | |
| ------------------------------------------------------------------------------TCAACAGTTCATTAGACG-------------- | 18 | - | - | - | - | - | - | - | 1 | |
| ------------------------------------------------------------------------TCAGGCTCAACAGTTCATT------------------- | 19 | - | - | - | - | - | - | - | 1 | |
| rat | gactgaagcagaagacattttctgtgatggaagtggagagggcaaaggaaaggagacgaagatcacctTTCCTCAGGCTCAACAGTTCATTAGACGTCgtctgacttgtc | |||||||||
| ************************************************************************************************************** | ||||||||||
| rat | (((..(((((((.(((....((((.....(((.((....((((..((((((((.((......)).))))))))...))))..)).)))..)))).))).)))).)))))) | 0.700 -33.60 | ||||||||
| rat | chromosome:8:57733480:57733589:-1 | intergenic |
block1470002 [novel_cloningOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.274 | no | no | 0.40/0.45 | 19/24/0.91 | 1.2 | 1.1 | 11 | 0 | 2 | 0 | 24 | 9 | 5arm | 1 | nd | 0.33 | 3 | 11 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----------------------------UCUGCAA--------------------------------------------------------------------------- | 6 | novel | |
| seed | -------------------------------GCAAGAA------------------------------------------------------------------------ | 3 | novel | |
| seed | -----------------------------CUGCAAG-------------------------------------------------------------------------- | 1 | novel | |
| seed | -------------------------UCUUCUG------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ---------------------------TTCTGCAAGAACTCTTCTTG--------------------------------------------------------------- | 20 | 1 | 3 | |
| ------------------------------TGCAAGAACTCTTCTTGGCT------------------------------------------------------------ | 20 | - | 3 | |
| ---------------------------TTCTGCAAGAACTCTTCTTGG-------------------------------------------------------------- | 21 | - | 2 | |
| ------------------------TTCTTCTGCAAGAACTCTTCTTGG-------------------------------------------------------------- | 24 | - | 1 | |
| ----------------------------TCTGCAAGAACTCTTCTTG--------------------------------------------------------------- | 19 | - | 1 | |
| rat | tttacaaatgtccaagccaattgcTTCTTCTGCAAGAACTCTTCTTGGCTatggcatttttagtgggtgtgagaagactcagaagaaacactggatgaggggatgtgaga | |||
| ************************************************************************************************************** | ||||
| rat | ((((((....(((...(((..((.((((((((..((...(((((((.......((((((.....))))))))))))))))))))))).)).))).....))).)))))). | 0.700 -26.11 | ||
| rat | chromosome:3:76962439:76962548:1 | intergenic |
novel_cloningOK_loopOverlap_mirtron_nonpairedHIGH_bulgeHIGH (3 loci)
block384009 [novel_cloningOK_loopOverlap_mirtron_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.108 | no | no | 0.39/0.48 | 18/23/0.93 | 0.4 | 0.1 | 15 | 0 | 8 | 0 | 36 | -8 | 5arm_loop_3arm | 1 | 0 | 0.40 | 5 | 29 | 8 | na | na |
| reads | miRBase family seed | |||||||||
| seed | --------------------------------------ACACUAA--------------------------------------------------------- | 15 | novel | |||||||
| seed | -------------------------------------CACACUA---------------------------------------------------------- | 10 | novel | |||||||
| seed | -----------------------------------GUCACAC------------------------------------------------------------ | 2 | novel | |||||||
| seed | ------------------------------------UCACACU----------------------------------------------------------- | 2 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T5S1 | T5S2 | |||
| -------------------------------------CACACTAACTTGTCTTCCAG--------------------------------------------- | 20 | 3 | 1 | 4 | - | 1 | 2 | 1 | 1 | |
| ------------------------------------TCACACTAACTTGTCTTCCAG--------------------------------------------- | 21 | - | 1 | 1 | - | 2 | 2 | 1 | - | |
| ------------------------------------TCACACTAACTTGTCTTCCA---------------------------------------------- | 20 | - | - | 1 | 2 | - | - | - | - | |
| -----------------------------------GTCACACTAACTTGTCTTCCA---------------------------------------------- | 21 | 1 | - | - | - | - | - | - | - | |
| ----------------------------------TGTCACACTAACTTGTCTTCCAG--------------------------------------------- | 23 | - | - | - | 1 | - | - | - | - | |
| -------------------------------------CACACTAACTTGTCTTCCA---------------------------------------------- | 19 | - | - | - | 1 | - | - | - | - | |
| -------------------------------------CACACTAACTTGTCTTCCAGG-------------------------------------------- | 21 | - | - | - | - | - | 1 | - | - | |
| ----------------------------------TGTCACACTAACTTGTCT-------------------------------------------------- | 18 | - | - | - | 1 | - | - | - | - | |
| -----------------------------------GTCACACTAACTTGTCTTCCAG--------------------------------------------- | 22 | - | - | - | - | 1 | - | - | - | |
| rat | gttgcttgcaaattgctccaggcttttaagttcctgTCACACTAACTTGTCTTCCAGgttttggaactgaaggaacacaaactggatggcaaattgatagac | |||||||||
| ****************************************************************************************************** | ||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000003106 ENSRNOG00000002270 Hnrpdl | |||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000060978 ENSRNOG00000002270 Hnrpdl | |||||||||
| rat | ....((..(((.(((((((((........((((((((..((..((((((.....)))))).))..))...)))))).....)))))..)))).)))..)).. | 0.940 -25.12 | ||||||||
| rat | chromosome:14:10862145:10862246:1 | Same_strand|Boundary_coding|ENSRNOT00000003106|ENSRNOG00000002270 ## ENSRNOG00000002270|protein_coding|Hnrpdl|Heterogeneous nuclear ribonucleoprotein D-like (hnRPD-like protein) (hnRNP-DL). [Source:UniProtKB/Swiss-Prot;Acc:Q3SWU3] |
block1134977 [novel_cloningOK_loopOverlap_mirtron_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.701 | no | no | 0.50/0.53 | 18/21/0.80 | 0.0 | 0.3 | 22 | 0 | 7 | 0 | 40 | -6 | 5arm_loop_3arm | 1 | 0 | 0.33 | 5 | 45 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | -----------------------------------------CUGUGCU---------------------------------------------------------------------- | 44 | novel | ||||||
| seed | ------------------------------------------UGUGCUC--------------------------------------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T2S1 | T2S2 | T3S1 | T4S1 | T5S1 | T5S2 | |||
| ----------------------------------------TCTGTGCTCTCACTCACTCAG--------------------------------------------------------- | 21 | 16 | 3 | 2 | 3 | 2 | 1 | - | |
| ----------------------------------------TCTGTGCTCTCACTCACTCA---------------------------------------------------------- | 20 | 6 | 1 | - | - | 1 | 1 | - | |
| ----------------------------------------TCTGTGCTCTCACTCACT------------------------------------------------------------ | 18 | 1 | - | - | 2 | - | - | 1 | |
| ----------------------------------------TCTGTGCTCTCACTCACTC----------------------------------------------------------- | 19 | 3 | - | - | 1 | - | - | - | |
| -----------------------------------------CTGTGCTCTCACTCACTCA---------------------------------------------------------- | 19 | - | 1 | - | - | - | - | - | |
| rat | gcgttgtgcagtgccttctctgtttctgagctaaactttgTCTGTGCTCTCACTCACTCAGgatgatcagcatggacatcgagcaagtgattaccctgagcttagcgttgcttttggc | ||||||||
| ********************************************************************************************************************** | |||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000022055 ENSRNOG00000016122 Hmgcr | ||||||||
| rat | ((.....(((((((...(((.((.((...(((......((((((((((.(((.((.....)).)))..))))))))))...)))....))..))...)))....))))))).....)) | 0.530 -27.20 | |||||||
| rat | chromosome:2:27136744:27136861:-1 | Same_strand|Intronic_coding|ENSRNOT00000022055|ENSRNOG00000016122 ## ENSRNOG00000016122|protein_coding|Hmgcr|3-hydroxy-3-methylglutaryl-coenzyme A reductase (EC 1.1.1.34) (HMG-CoA reductase). [Source:UniProtKB/Swiss-Prot;Acc:P51639] |
block43199 [novel_cloningOK_loopOverlap_mirtron_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.747 | no | no | 0.45/0.50 | 19/22/0.91 | 0.6 | 0.7 | 11 | 0 | 6 | 0 | 13 | -3 | 3arm | 1 | 0 | 0.36 | 5 | 11 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | ------------------------------------------------GUCUCUG---------------------------- | 6 | novel | |||||
| seed | -------------------------------------------------UCUCUGA--------------------------- | 3 | novel | |||||
| seed | ----------------------------------------------AUGUCUC------------------------------ | 2 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S2 | T4S2 | |||
| -----------------------------------------------TGTCTCTGATTCCTCCTTCT---------------- | 20 | 1 | 3 | 1 | - | - | - | |
| ------------------------------------------------GTCTCTGATTCCTCCTTCTAGC------------- | 22 | - | - | - | - | 1 | 1 | |
| ---------------------------------------------CATGTCTCTGATTCCTCCTTCT---------------- | 22 | - | 2 | - | - | - | - | |
| -----------------------------------------------TGTCTCTGATTCCTCCTTCTAG-------------- | 22 | - | 1 | - | - | - | - | |
| ------------------------------------------------GTCTCTGATTCCTCCTTCT---------------- | 19 | - | - | - | 1 | - | - | |
| rat | cctttccaggagggcggtgggtcaggttgctgctcttttccctaaCATGTCTCTGATTCCTCCTTCTAGCgttcttccagagg | |||||||
| *********************************************************************************** | ||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>> | ENSRNOT00000028407 ENSRNOG00000020930 RGD1311493_predicted | |||||||
| rat | (((((..(((((.((((.((((((((..((..................)).)))))).)).)).....)).)))))..))))) | 0.840 -18.37 | ||||||
| rat | chromosome:10:91371696:91371778:-1 | Same_strand|Boundary_coding|ENSRNOT00000028407|ENSRNOG00000020930 ## ENSRNOG00000020930|protein_coding|RGD1311493_predicted| |
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