other hairpins
novel_cloningOK_loopOverlap_mirtron_nonpairedHIGH_bulgeHIGH (3 loci)
novel_cloningOK_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH (3 loci)
block879114 [novel_cloningOK_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.32/0.40 | 19/24/0.80 | 0.0 0.5 0.0 | 0.0 0.5 0.0 | 15 2 1 | 0 0 0 | 4 1 1 | 0 0 0 | 16 7 0 | -3 7 17 | 3arm 3arm 3arm | 1 1 1 | nd nd nd | 0.33 0.43 0.37 | 5 5 3 | 30 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ------------------------------------------AGGACUU-------------------------------- | 24 | novel | |||
| seed | -----------------------------------------------------UACAUAA--------------------- | 1 | novel | |||
| seed | ---------------------------------------------ACUUCAU----------------------------- | 1 | novel | |||
| seed | ----------------------------------------------------CUACAUA---------------------- | 1 | novel | |||
| seed | ---------------------------------------UAUAGGA----------------------------------- | 1 | novel | |||
| seed | --------------------------------------------------------------CUUACCC------------ | 1 | novel | |||
| seed | ----------------------------------------AUAGGAC---------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T4S1 | T4S2 | T5S1 | |||
| -----------------------------------------TAGGACTTCATCTACATAATGCTT---------------- | 24 | 3 | 1 | 1 | 15 | |
| -----------------------------------------TAGGACTTCATCTACATAA--------------------- | 19 | - | - | - | 4 | |
| -------------------------------------------------------------GCTTACCCATGAATACAAGT | 20 | - | - | - | 1 | |
| ---------------------------------------------------TCTACATAATGCTTACCCATGAA------- | 23 | - | - | - | 1 | |
| --------------------------------------------GACTTCATCTACATAATGCT----------------- | 20 | - | - | - | 1 | |
| --------------------------------------TTATAGGACTTCATCTACA------------------------ | 19 | - | - | - | 1 | |
| ---------------------------------------TATAGGACTTCATCTACAT----------------------- | 19 | - | - | - | 1 | |
| ----------------------------------------------------CTACATAATGCTTACCCATGA-------- | 21 | - | - | - | 1 | |
| rat | gcttttgatgttggacaaagattgtggatgaggtcaacttaTAGGACTTCATCTACATAATGCTTacccatgaatacaagt | |||||
| ********************************************************************************* | ||||||
| rat | ...((((((..(((...(((..(((((((((((((.........))))))))))))).....)))..)))...)).)))). | 0.990 -22.20 | ||||
| rat | chromosome:1:124839861:124839941:-1 | intergenic |
block996234 [novel_cloningOK_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.37/0.45 | 19/21/0.72 | 0.9 | 0.6 | 16 | 0 | 2 | 0 | 30 | -3 | 5arm_loop | 1 | nd | 0.37 | 4 | 18 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------GCUAAGA----------------------------------------------------------------------------- | 11 | novel | |
| seed | ----------------------------------AAGAUGC-------------------------------------------------------------------------- | 5 | novel | |
| seed | ------------------------------UGCUAAG------------------------------------------------------------------------------ | 2 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ------------------------------TGCTAAGATGCGTGTGAACA----------------------------------------------------------------- | 20 | 3 | 8 | |
| ---------------------------------TAAGATGCGTGTGAACAAT--------------------------------------------------------------- | 19 | - | 5 | |
| -----------------------------TTGCTAAGATGCGTGTGAACA----------------------------------------------------------------- | 21 | - | 2 | |
| rat | ctatctcttctacttctgagtgttgacactTGCTAAGATGCGTGTGAACAATacccaagttccatgtatccatccttgtgtctccatcctcctggaaggcaagaagagttgttag | |||
| ******************************************************************************************************************* | ||||
| rat | (((.(((((((.((((((((((..(((((.......((((((((.((((.........)))))))))))).......)))))..))..)))..)))))...)))))))....))) | 0.990 -36.64 | ||
| rat | chromosome:1:124853160:124853274:1 | intergenic |
block1600398 [novel_cloningOK_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.40/0.48 | 19/23/0.89 | 0.0 | 0.0 | 14 | 0 | 3 | 0 | 35 | -4 | 5arm_loop_3arm | 1 | nd | 0.35 | 5 | 19 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ------------------------------------CUGAAGA--------------------------------------------------------------------- | 17 | novel | ||
| seed | -----------------------------------GCUGAAG---------------------------------------------------------------------- | 1 | novel | ||
| seed | ------------------------------------------AGUCAGG--------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T4S2 | T5S1 | |||
| -----------------------------------GCTGAAGAGTCAGGAATTTTGTG------------------------------------------------------ | 23 | - | 1 | 14 | |
| -----------------------------------------GAGTCAGGAATTTTGTGCCTC-------------------------------------------------- | 21 | - | - | 1 | |
| ----------------------------------GGCTGAAGAGTCAGGAATT----------------------------------------------------------- | 19 | - | - | 1 | |
| -----------------------------------GCTGAAGAGTCAGGAATTT---------------------------------------------------------- | 19 | - | - | 1 | |
| -----------------------------------GCTGAAGAGTCAGGAATTTT--------------------------------------------------------- | 20 | 1 | - | - | |
| rat | gggatgtggggaagtgggatgtggggggaagagggGCTGAAGAGTCAGGAATTTTGTGcctcgggttctctttttagacacctttctccatgtcagagctttactaccttcc | ||||
| **************************************************************************************************************** | |||||
| rat | ((((.((((..((((..((((((((((...((((..((((((((...(((((((........)))))))))))))))...))))))))))))))...))))..)))).)))) | 0.790 -41.60 | |||
| rat | chromosome:4:164236838:164236949:-1 | intergenic |
novel_cloningOK_mirtron_bulgeHIGH (3 loci)
block82369 [novel_cloningOK_mirtron_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.130 | no | no | 0.50/0.56 | 18/22/0.80 | 0.0 | 0.9 | 7 | 0 | 5 | 0 | 9 | 10 | 3arm | 1 | 0 | 0.28 | 4 | 15 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ---------------------------------------------------------------------CUCCAAA---------------------- | 12 | novel | ||||
| seed | ----------------------------------------------------------------------UCCAAAC--------------------- | 3 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T4S1 | T4S2 | T5S1 | |||
| --------------------------------------------------------------------TCTCCAAACACCCTCTCCTAG--------- | 21 | 5 | 1 | 1 | 1 | - | |
| ---------------------------------------------------------------------CTCCAAACACCCTCTCCTAG--------- | 20 | 1 | - | - | - | 1 | |
| --------------------------------------------------------------------TCTCCAAACACCCTCTCC------------ | 18 | - | 2 | - | - | - | |
| ---------------------------------------------------------------------CTCCAAACACCCTCTCCT----------- | 18 | - | 1 | - | - | - | |
| --------------------------------------------------------------------TCTCCAAACACCCTCTCCTA---------- | 20 | - | 1 | - | - | - | |
| --------------------------------------------------------------------TCTCCAAACACCCTCTCCTAGA-------- | 22 | 1 | - | - | - | - | |
| rat | aggctgctttgtgtgtgggggacatggagggaagtggatggacagatgagcagacttcctcactgaacTCTCCAAACACCCTCTCCTAGattgctgcc | ||||||
| ************************************************************************************************** | |||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>> | ENSRNOT00000014118 ENSRNOG00000009681 Flot2 | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>> | ENSRNOT00000056232 ENSRNOG00000009681 Flot2 | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>> | ENSRNOT00000014104 ENSRNOG00000009681 Flot2 | ||||||
| rat | .(((.((.....((.((((......((((((...((((.((.(((.((((........)))))))..)).))))....)))))))))).)).)).))) | 0.950 -30.90 | |||||
| rat | chromosome:10:64102555:64102652:1 | Same_strand|Boundary_coding|ENSRNOT00000056232|ENSRNOG00000009681 ## ENSRNOG00000009681|protein_coding|Flot2|Flotillin-2 (Reggie-1) (REG-1). [Source:UniProtKB/Swiss-Prot;Acc:Q9Z2S9] |
block187998 [novel_cloningOK_mirtron_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.044 | no | no | 0.52/0.58 | 18/22/0.74 | 0.0 | 0.2 | 14 | 0 | 8 | 0 | 20 | 17 | 3arm | 1 | 1 | 0.29 | 4 | 35 | 8 | na | na |
| reads | miRBase family seed | |||||||||
| seed | --------------------------------------------------------------------------GACCAUG--------------------------------- | 35 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| -------------------------------------------------------------------------TGACCATGCCTCCTTTCCCAA-------------------- | 21 | 1 | 7 | - | 1 | 1 | 4 | - | - | |
| -------------------------------------------------------------------------TGACCATGCCTCCTTTCCC---------------------- | 19 | 1 | 1 | 1 | 1 | - | 1 | 1 | 2 | |
| -------------------------------------------------------------------------TGACCATGCCTCCTTTCCCA--------------------- | 20 | 2 | 1 | - | 3 | - | - | - | 2 | |
| -------------------------------------------------------------------------TGACCATGCCTCCTTTCCCAAG------------------- | 22 | - | 1 | - | - | - | - | 1 | 2 | |
| -------------------------------------------------------------------------TGACCATGCCTCCTTTCC----------------------- | 18 | - | - | - | - | - | 1 | - | - | |
| rat | ggtgagtggggcctgaagaagaggcgagatggtcggggagagggaagggacgcactgtcttccctaacacgccTGACCATGCCTCCTTTCCCAAgggtacctctcctgctgccg | |||||||||
| ****************************************************************************************************************** | ||||||||||
| >>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000001911 ENSRNOG00000001409 Gnb2 | |||||||||
| rat | ((((((.((..(((...((((((((...(((((((((...(((((..((((.....)))))))))......))))))))))))))..)))....)))..)).))).....))). | 0.930 -47.50 | ||||||||
| rat | chromosome:12:19598641:19598754:-1 | Same_strand|Intronic_coding|ENSRNOT00000001911|ENSRNOG00000001409 ## ENSRNOG00000001409|protein_coding|Gnb2|Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 (Transducin beta chain 2) (G protein subunit beta-2). [Source:UniProtKB/Swiss-Prot;Acc:P54313] |
block1458401 [novel_cloningOK_mirtron_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.076 | no | no | 0.60/0.64 | 18/24/0.83 | 0.0 | 0.4 | 36 | 0 | 7 | 0 | 25 | 5 | 5arm | 1 | 0 | 0.19 | 4 | 48 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | --------------------------GACUGUC------------------------------------------------------------------------------------- | 48 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T4S2 | T5S1 | T5S2 | |||
| -------------------------TGACTGTCCTGCTCTCCCCA------------------------------------------------------------------------- | 20 | 4 | 10 | - | 7 | - | - | 1 | |
| -------------------------TGACTGTCCTGCTCTCCCCAG------------------------------------------------------------------------ | 21 | - | 8 | 1 | 4 | - | - | 2 | |
| -------------------------TGACTGTCCTGCTCTCCCC-------------------------------------------------------------------------- | 19 | 1 | 3 | - | 2 | - | 1 | - | |
| -------------------------TGACTGTCCTGCTCTCCCCAGG----------------------------------------------------------------------- | 22 | - | 1 | - | - | 1 | - | - | |
| -------------------------TGACTGTCCTGCTCTCCC--------------------------------------------------------------------------- | 18 | - | - | - | 1 | - | - | - | |
| -------------------------TGACTGTCCTGCTCTCCCCAGGGT--------------------------------------------------------------------- | 24 | - | 1 | - | - | - | - | - | |
| rat | ggtttttggtcccttttttttttccTGACTGTCCTGCTCTCCCCAGggtgtggtctgcaccctgcatgagggagatgactttggcaagttagctctggtgaacgatgctccgagagct | ||||||||
| ********************************************************************************************************************** | |||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000052099 ENSRNOG00000001516 Rapgef4 | ||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000048797 ENSRNOG00000001516 Rapgef4 | ||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000010630 ENSRNOG00000001516 Rapgef4 | ||||||||
| rat | (((((((((...............(((((((((....((((((((((((((.....)))))))).....)))))).......)))).))))).................))))))))) | 0.510 -36.95 | |||||||
| rat | chromosome:3:54658606:54658723:1 | Same_strand|Boundary_coding|ENSRNOT00000048797|ENSRNOG00000001516 ## ENSRNOG00000001516|protein_coding|Rapgef4|Rap guanine nucleotide exchange factor 4 (cAMP-regulated guanine nucleotide exchange factor II) (cAMP-GEFII) (Exchange factor directly activated by cAMP 2) (Epac 2) (Fragment). [Source:UniProtKB/Swiss-Prot;Acc:Q9Z1C7] |
novel_cloningOK_mirtron_nonpairedHIGH (3 loci)
block94093 [novel_cloningOK_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.191 | no | no | 0.61/0.65 | 18/24/0.75 | 0.0 | 1.6 | 14 | 0 | 8 | 0 | 22 | 5 | 3arm | 1 | 0 | 0.32 | 2 | 24 | 8 | na | na |
| reads | miRBase family seed | |||||||||
| seed | ---------------------------------------------------CAUCACU------------------------------------ | 24 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S2 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --------------------------------------------------CCATCACTGTTCCCCCTCCCA----------------------- | 21 | 3 | - | 1 | 2 | - | 1 | - | - | |
| --------------------------------------------------CCATCACTGTTCCCCCTCCCAG---------------------- | 22 | 4 | - | - | 1 | - | - | - | - | |
| --------------------------------------------------CCATCACTGTTCCCCCTC-------------------------- | 18 | 1 | 3 | - | - | - | - | - | - | |
| --------------------------------------------------CCATCACTGTTCCCCCTCCC------------------------ | 20 | - | 1 | 1 | - | 1 | - | 1 | - | |
| --------------------------------------------------CCATCACTGTTCCCCCTCC------------------------- | 19 | - | 2 | - | - | - | - | - | - | |
| --------------------------------------------------CCATCACTGTTCCCCCTCCCAGGT-------------------- | 24 | - | 1 | - | - | - | - | - | 1 | |
| rat | acaggcagcctcatgggtcggtgggtggtgacctgtccatgtccttgagaCCATCACTGTTCCCCCTCCCAGgtgtgcgtatgatcagcctgtc | |||||||||
| ********************************************************************************************** | ||||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000039836 ENSRNOG00000028103 Psmd3 | |||||||||
| rat | ((((((.(((...((((..((.(((..((((...(((((......)).)))..))))..))).))..))))))).............)))))). | 0.680 -31.64 | ||||||||
| rat | chromosome:10:87465736:87465829:1 | Same_strand|Boundary_coding|ENSRNOT00000039836|ENSRNOG00000028103 ## ENSRNOG00000028103|protein_coding|Psmd3|proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 [Source:RefSeq_peptide;Acc:NP_001008282] |
block979189 [novel_cloningOK_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.383 | no | no | 0.50/0.58 | 18/24/0.81 | 0.0 | 1.0 | 18 | 0 | 5 | 0 | 19 | 0 | 3arm | 1 | 0 | 0.40 | 3 | 37 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | --------------------------------------------------UGACUGA----------------------------------- | 30 | novel | ||||
| seed | -------------------------------------------------CUGACUG------------------------------------ | 7 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S1 | T3S1 | T4S1 | T5S1 | |||
| -------------------------------------------------CTGACTGACTGTGCCTTCCT----------------------- | 20 | 5 | 7 | 2 | 2 | 1 | |
| ------------------------------------------------TCTGACTGACTGTGCCTTCC------------------------ | 20 | - | 1 | 2 | - | 1 | |
| -------------------------------------------------CTGACTGACTGTGCCTTCCTAG--------------------- | 22 | - | - | 3 | - | - | |
| -------------------------------------------------CTGACTGACTGTGCCTTCCTAGCC------------------- | 24 | - | 3 | - | - | - | |
| -------------------------------------------------CTGACTGACTGTGCCTTCCTA---------------------- | 21 | - | 1 | 2 | - | - | |
| -------------------------------------------------CTGACTGACTGTGCCTTCC------------------------ | 19 | 1 | - | 1 | 1 | - | |
| ------------------------------------------------TCTGACTGACTGTGCCTTC------------------------- | 19 | - | 1 | 1 | - | - | |
| ------------------------------------------------TCTGACTGACTGTGCCTT-------------------------- | 18 | - | 1 | - | - | - | |
| -------------------------------------------------CTGACTGACTGTGCCTTC------------------------- | 18 | - | - | 1 | - | - | |
| rat | gggggtgggggtacctggaagggttcgtgcacacatggggctagaatctCTGACTGACTGTGCCTTCCTAGCCgcaggaatccctgacttcc | ||||||
| ******************************************************************************************** | |||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000027384 ENSRNOG00000020102 Sirt2 | ||||||
| rat | ((..((((((((.(((((..(((.....(((((....((..(((.....))).))...)))))...)))..))..))).)))))).))..)) | 0.580 -30.80 | |||||
| rat | chromosome:1:83884058:83884149:1 | Same_strand|Boundary_coding|ENSRNOT00000027384|ENSRNOG00000020102 ## ENSRNOG00000020102|protein_coding|Sirt2|NAD-dependent deacetylase sirtuin-2 (EC 3.5.1.-) (SIR2-like protein 2). [Source:UniProtKB/Swiss-Prot;Acc:Q5RJQ4] |
block1031740 [novel_cloningOK_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.092 | no | no | 0.60/0.64 | 18/22/0.75 | 0.0 | 0.5 | 11 | 0 | 3 | 0 | 28 | 6 | 3arm | 1 | 0 | 0.33 | 2 | 20 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ----------------------------------------------------------------CAGCCCA----------------------------------------- | 19 | novel | ||
| seed | ---------------------------------------------------------------UCAGCCC------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S1 | T4S2 | |||
| ---------------------------------------------------------------TCAGCCCATCCCAACCTGCAG---------------------------- | 21 | 1 | 8 | 2 | |
| ---------------------------------------------------------------TCAGCCCATCCCAACCTGC------------------------------ | 19 | - | - | 3 | |
| ---------------------------------------------------------------TCAGCCCATCCCAACCTGCA----------------------------- | 20 | - | 2 | - | |
| ---------------------------------------------------------------TCAGCCCATCCCAACCTG------------------------------- | 18 | - | - | 2 | |
| ---------------------------------------------------------------TCAGCCCATCCCAACCTGCAGC--------------------------- | 22 | 1 | - | - | |
| --------------------------------------------------------------CTCAGCCCATCCCAACCTGCA----------------------------- | 21 | - | - | 1 | |
| rat | aggaaaaaaaaaactaaagtggggagccaggtaggagggcgcttcagaggttaatggtgacccTCAGCCCATCCCAACCTGCAGcttcaaggacttttatgagctggagcct | ||||
| **************************************************************************************************************** | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000028636 ENSRNOG00000021090 Pygm | ||||
| rat | (((............(((((..((((((((((.(((((((.....((.(((((....)))))))..)))).)))..)))))..)))))....)))))............))) | 0.550 -33.15 | |||
| rat | chromosome:1:209172477:209172588:1 | Same_strand|Boundary_coding|ENSRNOT00000028636|ENSRNOG00000021090 ## ENSRNOG00000021090|protein_coding|Pygm|Glycogen phosphorylase, muscle form (EC 2.4.1.1) (Myophosphorylase). [Source:UniProtKB/Swiss-Prot;Acc:P09812] |
novel_cloningOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH (3 loci)
block1061039 [novel_cloningOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.156 | no | no | 0.55/0.62 | 19/23/0.85 | 0.0 3.5 0.0 0.3 | 1.0 4.5 0.0 1.0 | 3 6 1 3 | 0 0 0 0 | 2 3 1 1 | 0 0 0 0 | 6 14 30 37 | 19 5 -2 -13 | 5arm 5arm 5arm_loop 5arm_loop_3arm | 1 1 1 1 | nd nd nd nd | 0.39 0.32 0.50 0.52 | 4 3 4 7 | 13 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------CAGAGCU-------------------------------------------------------------------------------------- | 3 | novel | ||
| seed | ---------------GGGAACU------------------------------------------------------------------------------ | 3 | novel | ||
| seed | ----------------------GGCAAGG----------------------------------------------------------------------- | 3 | novel | ||
| seed | ---------------------------------------GGACACC------------------------------------------------------ | 2 | novel | ||
| seed | -------------------------------GGACGAC-------------------------------------------------------------- | 1 | novel | ||
| seed | --------------------------------------UGGACAC------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S1 | T5S1 | |||
| ------TCAGAGCTTGGGAACTGGCA-------------------------------------------------------------------------- | 20 | 1 | - | 1 | |
| --------------------------------------TGGACACCTCGTGAGGAGAGGAG--------------------------------------- | 23 | - | - | 2 | |
| ---------------------TGGCAAGGTTGGACGACTGGAC--------------------------------------------------------- | 22 | - | - | 2 | |
| ---------------------TGGCAAGGTTGGACGACTG------------------------------------------------------------ | 19 | - | 1 | - | |
| ------TCAGAGCTTGGGAACTGGCAAGG----------------------------------------------------------------------- | 23 | - | - | 1 | |
| --------------TGGGAACTGGCAAGGTTGGAC----------------------------------------------------------------- | 21 | 1 | - | - | |
| ------------------------------TGGACGACTGGACACCTCGT-------------------------------------------------- | 20 | - | - | 1 | |
| --------------TGGGAACTGGCAAGGTTGG------------------------------------------------------------------- | 19 | - | - | 1 | |
| --------------TGGGAACTGGCAAGGTTGGACGA--------------------------------------------------------------- | 23 | - | - | 1 | |
| -------------------------------------CTGGACACCTCGTGAGGAGAG------------------------------------------ | 21 | - | - | 1 | |
| rat | ccgtccTCAGAGCTTGGGAACTGGCAAGGTTGGACGACTGGACACCTCGTGAGGAGAGGAGcctggagtcttgcactccagcgaggccaagtgtggatga | ||||
| **************************************************************************************************** | |||||
| rat | .(((((.....((((((...((.((.((((.((((....((...((((.......))))..))....)))).)).))...)).)).))))))..))))). | 0.620 -34.50 | |||
| rat | chromosome:20:5525634:5525733:-1 | intergenic |
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