other hairpins
novel_cloningOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH (3 loci)
block2090858 [novel_cloningOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.225 | no | no | 0.36/0.45 | 18/23/0.89 | 0.0 1.6 | 0.0 1.9 | 1 25 | 0 0 | 1 3 | 0 0 | 20 30 | 3 -9 | 5arm 5arm_loop_3arm | 5 5 | nd nd | 0.39 0.43 | 3 3 | 37 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------------------------CCUACAG--------------------------------------------------- | 17 | novel | ||
| seed | ----------------------------------ACAGCAA------------------------------------------------ | 8 | novel | ||
| seed | -----------------------------------CAGCAAC----------------------------------------------- | 6 | novel | ||
| seed | --------------------------------CUACAGC-------------------------------------------------- | 2 | novel | ||
| seed | ---------------------------------UACAGCA------------------------------------------------- | 2 | novel | ||
| seed | ------------------------------UCCUACA---------------------------------------------------- | 1 | novel | ||
| seed | ---------------------AAAGAAG------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T4S2 | T5S1 | |||
| ------------------------------TCCTACAGCAACATACTGAGT-------------------------------------- | 21 | 2 | - | 13 | |
| ---------------------------------TACAGCAACATACTGAGTATCT---------------------------------- | 22 | - | - | 7 | |
| ----------------------------------ACAGCAACATACTGAGTATCT---------------------------------- | 21 | 1 | - | 5 | |
| -------------------------------CCTACAGCAACATACTGAGT-------------------------------------- | 20 | - | - | 2 | |
| --------------------------------CTACAGCAACATACTGAGT-------------------------------------- | 19 | - | - | 2 | |
| ---------------------------------TACAGCAACATACTGAGT-------------------------------------- | 18 | - | - | 1 | |
| ------------------------------TCCTACAGCAACATACTGAGTA------------------------------------- | 22 | - | - | 1 | |
| -----------------------------TTCCTACAGCAACATACTGAGT-------------------------------------- | 22 | - | - | 1 | |
| ------------------------------TCCTACAGCAACATACTG----------------------------------------- | 18 | - | 1 | - | |
| --------------------CAAAGAAGTTTCCTACAGCAACA---------------------------------------------- | 23 | 1 | - | - | |
| rat | gccctcctctattctgaggtcaaagaagttTCCTACAGCAACATACTGAGTATCTagctggaaaggctttgatgtaacgaggacctggt | ||||
| ***************************************************************************************** | |||||
| rat | (((.(((((.........(((((((...(((((...(((...((((...))))...))))))))..))))))).....)))))...))) | 0.590 -19.94 | |||
| rat | chromosome:7:18803456:18803544:-1 | intergenic |
sblock11382 [novel_cloningOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.011 | no | no | 0.33/0.50 | 19/24/0.93 | 0.0 1.2 0.0 | 0.8 0.6 0.0 | 15 8 1 | 0 0 0 | 2 3 1 | 0 0 0 | 14 19 0 | -12 -22 14 | 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.33 0.55 0.32 | 7 5 2 | 27 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ---------------CUGUCAU--------------------------------------------- | 17 | novel | |||
| seed | ----------------------------CAAUCAG-------------------------------- | 3 | novel | |||
| seed | -------------------------UUCCAAU----------------------------------- | 2 | novel | |||
| seed | ---------------------------CCAAUCA--------------------------------- | 2 | novel | |||
| seed | -----------------GUCAUGA------------------------------------------- | 1 | novel | |||
| seed | --------------------------UCCAAUC---------------------------------- | 1 | novel | |||
| seed | ------------------------------------------------AAGUGGA------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T4S2 | T5S1 | |||
| --------------TCTGTCATGATTTCCAATCAGTCA----------------------------- | 24 | 1 | - | - | 11 | |
| --------------TCTGTCATGATTTCCAATCAG-------------------------------- | 21 | - | - | - | 4 | |
| ---------------------------CCAATCAGTCATAATGACCT-------------------- | 20 | - | - | - | 3 | |
| --------------------------TCCAATCAGTCATAATGACCTT------------------- | 22 | - | - | 1 | 1 | |
| ------------------------TTTCCAATCAGTCATAATGACCTT------------------- | 24 | - | 1 | - | 1 | |
| -----------------------------------------------TAAGTGGAGGTCTTGGGGTT | 20 | - | - | - | 1 | |
| --------------TCTGTCATGATTTCCAATC---------------------------------- | 19 | - | - | - | 1 | |
| ----------------TGTCATGATTTCCAATCAG-------------------------------- | 19 | - | - | - | 1 | |
| -------------------------TTCCAATCAGTCATAATGACCTT------------------- | 23 | - | - | - | 1 | |
| rat | ctccagaggtctccTCTGTCATGATTTCCAATCAGTCAtaatgaccttaagtggaggtcttggggtt | |||||
| ******************************************************************* | ||||||
| rat | (((((.((..((((.(((((((((((.......)))))...))))....)).))))..))))))).. | 0.820 -22.20 | ||||
| rat | chromosome:7:112748832:112748898:1 | intergenic |
novel_cloningOK_multiarm_DicerNOK_5varHIGH_randfoldOK (3 loci)
sblock2775 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.50/0.58 | 19/23/0.70 | 3.7 0.5 | 3.8 0.2 | 6 4 | 0 0 | 5 2 | 0 0 | 19 12 | 3 8 | 5arm 3arm | 1 1 | nd nd | 0.11 0.23 | 2 3 | 10 | 6 | 5 | 5 |
| reads | miRBase family seed | |||||||
| seed | ----------------------------------------------------------------UCUCUAG-------------------------- | 3 | novel | |||||
| seed | ---------------------CUAAAGC--------------------------------------------------------------------- | 2 | novel | |||||
| seed | --------------------------GCAGACC---------------------------------------------------------------- | 1 | novel | |||||
| seed | -------------------------AGCAGAC----------------------------------------------------------------- | 1 | novel | |||||
| seed | -----------------------------GACCUGU------------------------------------------------------------- | 1 | novel | |||||
| seed | ------------------------------------------------------------------UCUAGCC------------------------ | 1 | novel | |||||
| seed | --------------------CCUAAAG---------------------------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | |||
| ---------------------------------------------------------------ATCTCTAGCCACAGACTGCAG------------- | 21 | - | 2 | - | - | - | - | |
| --------------------CCTAAAGCAGACCTGTGGC---------------------------------------------------------- | 19 | - | - | - | - | 1 | - | |
| -------------------------AGCAGACCTGTGGCTGATA----------------------------------------------------- | 19 | - | - | 1 | - | - | - | |
| -------------------TCCTAAAGCAGACCTGTGGC---------------------------------------------------------- | 20 | - | - | - | - | - | 1 | |
| ------------------------AAGCAGACCTGTGGCTGATAGCT-------------------------------------------------- | 23 | - | - | - | 1 | - | - | |
| ----------------------------AGACCTGTGGCTGATAGCTG------------------------------------------------- | 20 | 1 | - | - | - | - | - | |
| ---------------------------------------------------------------ATCTCTAGCCACAGACTGCAGA------------ | 22 | - | - | - | - | - | 1 | |
| --------------------CCTAAAGCAGACCTGTGGCT--------------------------------------------------------- | 20 | 1 | - | - | - | - | - | |
| -----------------------------------------------------------------CTCTAGCCACAGACTGCAG------------- | 19 | - | - | - | - | - | 1 | |
| rat | tcacctatggcctgaagggTCCTAAAGCAGACCTGTGGCTGATAGCTGgattcctgtttgtttATCTCTAGCCACAGACTGCAGAcccaggggtgag | |||||||
| ************************************************************************************************* | ||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000037693 ENSRNOG00000000244 Coil | |||||||
| rat | (((((.....(((...(((((.....((((..(((((((((((((..((((....))))..)))))...)))))))).)))).))))))))))))). | 0.500 -36.10 | ||||||
| rat | chromosome:10:77489084:77489180:1 | Same_strand|Intronic_coding|ENSRNOT00000037693|ENSRNOG00000000244 ## ENSRNOG00000000244|protein_coding|Coil|coilin [Source:RefSeq_peptide;Acc:NP_059056] |
sblock4039 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.41/0.48 | 20/24/1.00 | 1.4 0.0 | 0.5 0.0 | 15 1 | 0 0 | 8 1 | 0 0 | 17 23 | 4 5 | 5arm 3arm | 1 1 | nd nd | 0.04 0.05 | 1 1 | 16 | 8 | 1 | -4 |
| reads | miRBase family seed | |||||||||
| seed | ---------------------CUGCACC------------------------------------------------------------------------- | 6 | novel | |||||||
| seed | --------------------ACUGCAC-------------------------------------------------------------------------- | 5 | novel | |||||||
| seed | -------------------GACUGCA--------------------------------------------------------------------------- | 2 | novel | |||||||
| seed | ------------------UGACUGC---------------------------------------------------------------------------- | 1 | novel | |||||||
| seed | ----------------------UGCACCC------------------------------------------------------------------------ | 1 | novel | |||||||
| seed | -----------------------------------------------------------AGGUAUA----------------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T4S1 | T4S2 | T5S1 | |||
| -------------------GACTGCACCCATGTATATACC------------------------------------------------------------- | 21 | 1 | - | - | 1 | - | - | 1 | 1 | |
| --------------------ACTGCACCCATGTATATACCT------------------------------------------------------------ | 21 | 1 | - | - | 2 | - | - | - | - | |
| --------------------ACTGCACCCATGTATATACC------------------------------------------------------------- | 20 | - | - | - | - | 1 | 1 | 1 | - | |
| ------------------TGACTGCACCCATGTATATACC------------------------------------------------------------- | 22 | - | - | 2 | - | - | - | - | - | |
| ----------------------------------------------------------TAGGTATATACATGGGGGCA----------------------- | 20 | 1 | - | - | - | - | - | - | - | |
| ---------------------CTGCACCCATGTATATACCTAT---------------------------------------------------------- | 22 | - | - | - | - | - | - | 1 | - | |
| -------------------GACTGCACCCATGTATATACCT------------------------------------------------------------ | 22 | - | - | - | - | 1 | - | - | - | |
| -----------------TTGACTGCACCCATGTATATACCT------------------------------------------------------------ | 24 | - | 1 | - | - | - | - | - | - | |
| rat | ggaacctgaagttatagTTGACTGCACCCATGTATATACCTATagatatacacatgtaTAGGTATATACATGGGGGCAgtcgaccatatatgtatctatcc | |||||||||
| ***************************************************************************************************** | ||||||||||
| rat | (((.........(((.(((((((((.((((((((((((((((((.((......)).)))))))))))))))))).))))))))).)))..........))) | 0.980 -47.21 | ||||||||
| rat | chromosome:14:37358023:37358123:-1 | intergenic ## {Repeats: trf 1 15 0 class=trf,trf 30 32 0 class=trf} |
sblock518 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.62/0.71 | 18/24/0.71 | 0.0 1.8 | 0.0 1.8 | 1 23 | 0 0 | 1 7 | 0 0 | 25 22 | 0 12 | 5arm 3arm | 1 1 | nd nd | 0.12 0.44 | 1 7 | 24 | 8 | 9 | 9 |
| reads | miRBase family seed | |||||||||
| seed | ---------------------------------------------------------------------------CUGCGGU------------------------------------ | 11 | novel | |||||||
| seed | -------------------------------------------------------------------------CGCUGCG-------------------------------------- | 5 | novel | |||||||
| seed | --------------------------------------------------------------------------GCUGCGG------------------------------------- | 4 | novel | |||||||
| seed | --------------------------------------------------------------------AGACCCG------------------------------------------- | 3 | novel | |||||||
| seed | --------------------------CUGCUUC------------------------------------------------------------------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S2 | T5S1 | |||
| --------------------------------------------------------------------------GCTGCGGTGCATACCCTTCCC----------------------- | 21 | 3 | - | 1 | - | - | 1 | - | - | |
| --------------------------------------------------------------------------GCTGCGGTGCATACCCTTC------------------------- | 19 | - | - | 1 | - | 1 | 2 | - | - | |
| ------------------------------------------------------------------------CCGCTGCGGTGCATACCCTTCCC----------------------- | 23 | - | - | - | - | - | 3 | - | - | |
| -------------------------------------------------------------------------CGCTGCGGTGCATACCCTTCCC----------------------- | 22 | - | 1 | - | - | - | 1 | - | - | |
| -------------------------------------------------------------------TAGACCCGCTGCGGTGCATAC------------------------------ | 21 | 1 | - | - | - | - | 1 | - | - | |
| ------------------------------------------------------------------------CCGCTGCGGTGCATACCCT--------------------------- | 19 | 2 | - | - | - | - | - | - | - | |
| -------------------------------------------------------------------------CGCTGCGGTGCATACCCTTCC------------------------ | 21 | - | - | - | - | - | - | - | 1 | |
| -------------------------------------------------------------------------CGCTGCGGTGCATACCCT--------------------------- | 18 | - | - | - | - | - | 1 | - | - | |
| --------------------------------------------------------------------------GCTGCGGTGCATACCCTTCCCG---------------------- | 22 | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------------------------------TAGACCCGCTGCGGTGCATACCC---------------------------- | 23 | - | 1 | - | - | - | - | - | - | |
| -------------------------ACTGCTTCGCGGCCCTCTTCCCCC--------------------------------------------------------------------- | 24 | - | - | - | 1 | - | - | - | - | |
| --------------------------------------------------------------------------GCTGCGGTGCATACCCTTCC------------------------ | 20 | - | - | - | - | - | 1 | - | - | |
| rat | cagggtgcttgcccccacaccgttcACTGCTTCGCGGCCCTCTTCCCCCgtgccggggggaaggtggTAGACCCGCTGCGGTGCATACCCTTCCCGaatggtgtgtgcacgcgccctg | |||||||||
| ********************************************************************************************************************** | ||||||||||
| rat | ((((((((.(((...((((((((((..(((.((((((((((((((((((......))))))))).)).......))))))).)))..........)))))))))).))).)))))))) | 0.670 -63.31 | ||||||||
| rat | chromosome:1:70431968:70432085:-1 | intergenic |
novel_cloningOK_multiarm_DicerNOK_Multihit (3 loci)
sblock10774 [novel_cloningOK_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.011 | no | no | 0.57/0.61 | 18/24/0.75 | 0.0 0.7 | 2.5 0.0 | 6 6 | 0 0 | 2 4 | 0 0 | 10 0 | 19 31 | 5arm 3arm | 15 15 | nd nd | 0.30 0.33 | 2 2 | 12 | 4 | -23 | 0 |
| reads | miRBase family seed | |||||
| seed | -------------------------------------------------------------------------------------------CAACCCA---------------- | 5 | novel | |||
| seed | -----------CAACCCA------------------------------------------------------------------------------------------------ | 2 | novel | |||
| seed | ---------------------------------------------------CAACCCA-------------------------------------------------------- | 2 | novel | |||
| seed | --------------------------------------------------------------------------------------------AACCCAG--------------- | 2 | novel | |||
| seed | ---------------------------------------------------------------------------------------------ACCCAGG-------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T2S1 | T3S1 | T4S1 | |||
| ------------------------------------------------------------------------------------------TCAACCCAGGGCAGACACTCAGAC | 24 | - | 1 | - | 2 | |
| -------------------------------------------------------------------------------------------CAACCCAGGGCAGACACTCAGAC | 23 | 1 | - | - | 1 | |
| ------------------------------------------------------------------------------------------TCAACCCAGGGCAGACACTCAGA- | 23 | - | - | - | 1 | |
| ------------------------------------------------------------------------------------------TCAACCCAGGGCAGACAC------ | 18 | - | - | 1 | - | |
| --------------------------------------------------TCAACCCAGGGCAGACACTCAGA----------------------------------------- | 23 | - | - | - | 1 | |
| ----------TCAACCCAGGGCAGACAC-------------------------------------------------------------------------------------- | 18 | - | - | 1 | - | |
| ----------TCAACCCAGGGCAGACACTCAGA--------------------------------------------------------------------------------- | 23 | - | - | - | 1 | |
| --------------------------------------------------TCAACCCAGGGCAGACAC---------------------------------------------- | 18 | - | - | 1 | - | |
| --------------------------------------------------------------------------------------------AACCCAGGGCAGACACTCAGAC | 22 | - | - | 1 | - | |
| rat | actgtgtgtgTCAACCCAGGGCAGACACTCAGAacctgtgactgtgtgtgTCAACCCAGGGCAGACACTCAGAacctgtgactgtgtgtgTCAACCCAGGGCAGACACTCAGAC | |||||
| ****************************************************************************************************************** | ||||||
| rat | .(((...(((((..(((.(((..(((((.(((.((..((....((((.((((.......)))).)))).....))..))..)))...)))))..))).)))..))))).))).. | 0.450 -43.00 | ||||
| rat | chromosome:7:22452553:22452666:-1 | intergenic ## {Repeats: trf 275 299 0 class=trf,trf 316 339 0 class=trf,trf 362 385 0 class=trf,trf 440 463 0 class=trf,trf 356 379 0 class=trf,trf 396 419 0 class=trf,trf 402 425 0 class=trf,trf 281 305 0 class=trf,trf 434 457 0 class=trf,trf 322 345 0 class=trf} |
sblock177 [novel_cloningOK_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.465 | no | no | 0.30/0.58 | 18/24/0.80 | 0.0 0.0 0.0 0.5 0.0 | 0.0 0.0 0.0 0.5 0.0 | 1 1 1 6 1 | 0 0 0 0 0 | 1 1 1 2 1 | 0 0 0 0 0 | 4 44 23 14 0 | 26 -16 4 11 23 | 5arm 5arm_loop_3arm 3arm 3arm 3arm | 1 1 24 24 24 | nd nd nd nd nd | 0.32 0.46 0.32 0.15 0.23 | 2 5 3 1 2 | 10 | 2 | -11 | -11 |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------------CCCAUGG--------------------------- | 3 | novel | |
| seed | ----------------------------------------------------------------------CCAUGGU-------------------------- | 3 | novel | |
| seed | --------------------------------------------------------------CCUGUGU---------------------------------- | 1 | novel | |
| seed | ---------------------------------------------GAGGUAA--------------------------------------------------- | 1 | novel | |
| seed | -----GUUUCUU------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------------------------------------------AAGACUU--------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ---------------------------------------------------------------------CCCATGGTCCTTAAGACTTT-------------- | 20 | - | 3 | |
| --------------------------------------------------------------------TCCCATGGTCCTTAAGACTTT-------------- | 21 | 1 | 1 | |
| -------------------------------------------------------------TCCTGTGTCCCATGGTCCT----------------------- | 19 | - | 1 | |
| --------------------------------------------------------------------------------TAAGACTTTATATTGAGAGTGGA | 23 | - | 1 | |
| --------------------------------------------------------------------TCCCATGGTCCTTAAGAC----------------- | 18 | - | 1 | |
| --------------------------------------------TGAGGTAAATGTGTTGCTCCTGTG----------------------------------- | 24 | - | 1 | |
| ----TGTTTCTTTAGAAGGGGTTTGA----------------------------------------------------------------------------- | 22 | - | 1 | |
| rat | ccatTGTTTCTTTAGAAGGGGTTTGAtggccacatggctgccacTGAGGTAAATGTGTTGCTCCTGTGTCCCATGGTCCTTAAGACTTTATATTGAGAGTGGA | |||
| ******************************************************************************************************* | ||||
| ----------------------------------------------------------------------------------------------------------------- | ENSRNOT00000045258 ENSRNOG00000033713 | |||
| ----------------------------------------------------------------------------------------------------------------- | ENSRNOT00000043557 ENSRNOG00000033713 | |||
| ----------------------------------------------------------------------------------------------------------------- | ENSRNOT00000051032 ENSRNOG00000033713 | |||
| rat | ((((..((((..((.((((..(((((.(((((..(((....(((...(((((.....)))))...)))..)))))))).))))).)))).))..)))))))). | 0.490 -24.50 | ||
| rat | chromosome:1:49026238:49026340:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000051032|ENSRNOG00000033713 ## ENSRNOG00000033713|protein_coding|| |
sblock5573 [novel_cloningOK_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.074 | no | no | 0.29/0.74 | 18/21/0.73 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 1 1 1 7 | 0 0 0 0 | 1 1 1 2 | 0 0 0 0 | 13 17 29 16 | 19 14 2 8 | 5arm 5arm 5arm 3arm | 1 1 14 14 | nd nd nd nd | 0.33 0.21 0.26 0.43 | 3 2 2 7 | 11 | 3 | 6 | 3 |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------------------------------------------------AACCUCA----------------------------- | 8 | novel | ||
| seed | --------------GACCUGU------------------------------------------------------------------------------------------------ | 1 | novel | ||
| seed | ------------------UGUGAGA-------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ------------------------------GGGUUGG-------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T4S2 | T5S1 | |||
| --------------------------------------------------------------------------------TAACCTCAGAAATTTACAAGT---------------- | 21 | 1 | - | 7 | |
| -----------------CTGTGAGAAACTTGGGTTG--------------------------------------------------------------------------------- | 19 | - | - | 1 | |
| -----------------------------TGGGTTGGGGGTGGGGGTG--------------------------------------------------------------------- | 19 | 1 | - | - | |
| -------------TGACCTGTGAGAAACTTG-------------------------------------------------------------------------------------- | 18 | - | 1 | - | |
| rat | atgaagtgggaaatgacctgtgagaaacttgggttgggggtgggggtggggcagtaaaatatataaaagaaacttaagctTAACCTCAGAAATTTACAAGTatcacacagagcttta | ||||
| ********************************************************************************************************************* | |||||
| rat | .((((((..........(((((.((.(((((..((((((.((((..((((......................))))..)))).)))))).......))))).)).))))).)))))) | 0.630 -25.35 | |||
| rat | chromosome:18:63581381:63581497:-1 | intergenic ## {Repeats: dust 63581450 63581467 0 class=dust,dust 63581462 63581467 0 class=dust} |
novel_cloningOK_multiarm_DicerNOK_bulgeHIGH (3 loci)
sblock1833 [novel_cloningOK_multiarm_DicerNOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.041 | no | no | 0.40/0.52 | 19/25/0.86 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 3 1 2 9 | 0 0 0 0 | 2 1 1 4 | 0 0 0 0 | 7 42 13 1 | 30 -10 21 31 | 5arm 5arm_loop_3arm 3arm 3arm | 2 2 2 2 | nd nd nd nd | 0.30 0.56 0.38 0.35 | 4 6 4 4 | 21 | 4 | 5 | 8 |
| reads | miRBase family seed | |||||
| seed | -----------------------------------------------------------------------------------------------GACAUCU---------------- | 13 | novel | |||
| seed | --------GGGAAAA------------------------------------------------------------------------------------------------------- | 3 | novel | |||
| seed | ----------------------------------------------------------------------------------------------------CUCAGCC----------- | 2 | novel | |||
| seed | -------------------------------------------------------------------------------------GCUCAGG-------------------------- | 2 | novel | |||
| seed | -------------------------------------------AAGAAAG-------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T3S2 | T5S1 | T5S2 | |||
| ----------------------------------------------------------------------------------------------TGACATCTCAGCCTATGGTCTGT- | 23 | 2 | - | 9 | 1 | |
| -------AGGGAAAAGGATTTAGGTCA------------------------------------------------------------------------------------------- | 20 | 1 | - | 2 | - | |
| ------------------------------------------------------------------------------------TGCTCAGGTCTGACATCTCAG------------- | 21 | - | - | 2 | - | |
| ---------------------------------------------------------------------------------------------------TCTCAGCCTATGGTCTGTA | 19 | - | - | 2 | - | |
| ------------------------------------------GAAGAAAGTCTTGTTAGCACAGACA--------------------------------------------------- | 25 | - | - | 1 | - | |
| ----------------------------------------------------------------------------------------------TGACATCTCAGCCTATGGTCT--- | 21 | - | 1 | - | - | |
| rat | tgcaggaagggaaaaggatttaggtcaatactgctactcttggaagaaagtcttgttagcacagacatgacccaagtgtagttgtgctcaggtcTGACATCTCAGCCTATGGTCTGTa | |||||
| ********************************************************************************************************************** | ||||||
| rat | ((((((..(((....(((((((((((..(((.(((((.(((((......(((.((((......)))).)))))))).))))).)))....))))))).))))...)))....)))))) | 0.490 -32.30 | ||||
| rat | chromosome:1:102761564:102761681:1 | intergenic |
sblock1867 [novel_cloningOK_multiarm_DicerNOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.023 | no | no | 0.35/0.72 | 18/25/0.86 | 0.0 0.0 0.0 2.5 | 0.0 0.0 0.0 0.5 | 1 11 1 2 | 0 0 0 0 | 1 3 1 1 | 0 0 0 0 | 13 34 13 1 | 20 0 21 30 | 5arm 3arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.32 0.30 0.25 0.27 | 4 4 4 5 | 21 | 3 | -15 | -20 |
| reads | miRBase family seed | ||||
| seed | -----------------------------------------------------------------AGCUUUG---------------------------------------------- | 13 | novel | ||
| seed | ---------------------------------------------------------------AUAGCUU------------------------------------------------ | 4 | novel | ||
| seed | ----------------------------------------------------------------------------------------------------UGCUCCU----------- | 1 | novel | ||
| seed | --------------GGUCCAG------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -----------------------------------------------------------------------------------------------ACACGUG---------------- | 1 | novel | ||
| seed | --------------------------------------------------------------------------------------CCACACU------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T5S1 | T5S2 | |||
| ----------------------------------------------------------------TAGCTTTGAATCTCTGCATG---------------------------------- | 20 | - | 11 | 1 | |
| --------------------------------------------------------------TATAGCTTTGAATCTCTGCA------------------------------------ | 20 | 1 | 3 | - | |
| ----------------------------------------------------------------TAGCTTTGAATCTCTGCAT----------------------------------- | 19 | - | 1 | - | |
| -------------GGGTCCAGCCTGTGGTGGGGAGGAC-------------------------------------------------------------------------------- | 25 | - | 1 | - | |
| -------------------------------------------------------------------------------------CCCACACTCTACACGTGCTC------------- | 20 | - | 1 | - | |
| ---------------------------------------------------------------------------------------------------GTGCTCCTTGCAAACTCC- | 18 | - | 1 | - | |
| ----------------------------------------------------------------------------------------------TACACGTGCTCCTTGCAAACTC-- | 22 | - | 1 | - | |
| rat | gggaggaggagaggggtccagcctgtggtggggaggacagaaggtatgtgaaaagctgaaaataTAGCTTTGAATCTCTGCATGccccacactctacacgtgctccttgcaaactcct | ||||
| ********************************************************************************************************************** | |||||
| rat | (((((.....(((((((...((.((((((((((....(((.((((......(((((((......)))))))..)))))))....))))))....)))).))))))))).....))))) | 0.960 -40.60 | |||
| rat | chromosome:1:124852959:124853076:1 | intergenic |
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