other hairpins
novel_cloningOK_multiarm_DicerNOK_bulgeHIGH (3 loci)
sblock4393 [novel_cloningOK_multiarm_DicerNOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.131 | no | no | 0.39/0.46 | 19/26/0.85 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 5 | 0 0 0 | 1 1 3 | 0 0 0 | 31 54 27 | 6 -21 6 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.26 0.57 0.25 | 3 11 4 | 13 | 3 | 0 | 1 |
| reads | miRBase family seed | ||||
| seed | --------------------------------------------------------------------------UGGAUGC--------------------------------------- | 7 | novel | ||
| seed | -----------------------------------------------------------------------------------CAGAUGA------------------------------ | 2 | novel | ||
| seed | ----------------------------------------------------------------------------GAUGCAU------------------------------------- | 1 | novel | ||
| seed | --------------------------------GAGGUCU--------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -------------------------------------------------------------------------UUGGAUG---------------------------------------- | 1 | novel | ||
| seed | -------------------------------------------------------CUGUGUC---------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T3S2 | T5S1 | |||
| -------------------------------------------------------------------------TTGGATGCATCAGATGATTG--------------------------- | 20 | - | - | 5 | |
| ----------------------------------------------------------------------------------TCAGATGATTGGACCTTGTCACA--------------- | 23 | - | - | 1 | |
| ----------------------------------------------------------------------------------TCAGATGATTGGACCTTGTC------------------ | 20 | - | 1 | - | |
| -------------------------------TGAGGTCTGAGGTATTCAT---------------------------------------------------------------------- | 19 | - | - | 1 | |
| ---------------------------------------------------------------------------GGATGCATCAGATGATTGGACCTT--------------------- | 24 | - | - | 1 | |
| ------------------------------------------------------ACTGTGTCAATTTGTCTCTTTGG------------------------------------------- | 23 | - | - | 1 | |
| -------------------------------------------------------------------------TTGGATGCATCAGATGATTGGACCTT--------------------- | 26 | 1 | - | - | |
| -------------------------------------------------------------------------TTGGATGCATCAGATGATTGGACC----------------------- | 24 | - | - | 1 | |
| ------------------------------------------------------------------------TTTGGATGCATCAGATGATTGGA------------------------- | 23 | - | - | 1 | |
| rat | tggctctccaaccccaaccactcctggtgcctgaggtctgaggtattcatggcgactgtgtcaatttgtctctTTGGATGCATCAGATGATTGgaccttgtcacataggttgaagatctt | ||||
| ************************************************************************************************************************ | |||||
| rat | .((.(((.(((((......((....(((.((....((((((.(((((((.((.(((...........))).)).))))))).))))))....)))))..))......))))).))).)). | 0.480 -34.20 | |||
| rat | chromosome:15:253187:253306:-1 | intergenic |
novel_cloningOK_multiarm_DicerNOK_loopOverlap_randfoldOK (3 loci)
sblock10364 [novel_cloningOK_multiarm_DicerNOK_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.35/0.53 | 19/25/0.83 | 0.0 0.0 0.0 0.3 4.5 | 0.0 0.0 0.0 0.0 1.5 | 2 1 3 10 2 | 0 0 0 0 0 | 1 1 1 1 1 | 0 0 0 0 0 | 16 25 29 40 1 | 7 0 -9 -17 1 | 5arm 5arm 5arm_loop_3arm 5arm_loop_3arm 3arm | 2 2 2 2 2 | nd nd nd nd nd | 0.33 0.26 0.42 0.43 0.16 | 3 3 6 6 1 | 18 | 2 | -5 | 3 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------UGAUGGU-------------------------------- | 7 | novel | |
| seed | ------------------------------AGCAACA------------------------------------------- | 3 | novel | |
| seed | ------------------------------------------GAUGGUU------------------------------- | 3 | novel | |
| seed | -----------------GGUAGAA-------------------------------------------------------- | 2 | novel | |
| seed | ----------------------------------------------------AUGAAAC--------------------- | 1 | novel | |
| seed | -------------------------------------------------------------CUGCUUG------------ | 1 | novel | |
| seed | --------------------------AGGUAGC----------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ----------------------------------------GTGATGGTTTTCATGAAACTG------------------- | 21 | - | 7 | |
| -----------------------------------------TGATGGTTTTCATGAAACTG------------------- | 20 | - | 3 | |
| -----------------------------TAGCAACATTGGTGATGGTTTTCA--------------------------- | 24 | - | 3 | |
| ----------------TGGTAGAAATAGGTAGCAACA------------------------------------------- | 21 | 2 | - | |
| -------------------------TAGGTAGCAACATTGGTGA------------------------------------ | 19 | - | 1 | |
| ------------------------------------------------------------GCTGCTTGCTCCATGATGA- | 19 | - | 1 | |
| ---------------------------------------------------CATGAAACTGCTGCTTGCTCCATGA---- | 25 | - | 1 | |
| rat | nnnnnnnnnntctttctggtagaaataggTAGCAACATTGGTGATGGTTTTCATGAAACTGctgcttgctccatgatgaa | |||
| ******************************************************************************** | ||||
| rat | ..........((..(((((.((...(((((((((...((.((((......)))).))..)))))))))))))).)).)). | 0.990 -17.80 | ||
| rat | chromosome:6:122546566:122546645:1 | intergenic |
sblock8516 [novel_cloningOK_multiarm_DicerNOK_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.30/0.45 | 21/24/1.00 | 0.0 0.3 0.0 | 0.0 0.0 0.0 | 8 3 3 | 0 0 0 | 1 2 2 | 0 0 0 | 8 19 4 | 11 -2 10 | 5arm 5arm_loop 3arm | 1 1 1 | nd nd nd | 0.19 0.17 0.22 | 2 3 3 | 17 | 2 | -1 | 0 |
| reads | miRBase family seed | |||
| seed | ---------GGCAGAA-------------------------------------------------------------------- | 8 | novel | |
| seed | ----------------------------------------------------------GAGUCAA------------------- | 3 | novel | |
| seed | --------------------CACAGAU--------------------------------------------------------- | 2 | novel | |
| seed | ---AGAUAUG-------------------------------------------------------------------------- | 2 | novel | |
| seed | -GUAGAUA---------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------------------ACAGAUG-------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| --------TGGCAGAAAGTTCACAGATGT------------------------------------------------------- | 21 | - | 8 | |
| ---------------------------------------------------------TGAGTCAAATGTGAGATTTTTCA---- | 23 | 1 | 2 | |
| -------------------TCACAGATGTATGTCCTCAAGTC------------------------------------------ | 23 | 2 | - | |
| --TAGATATGGCAGAAAGTTCACAGA---------------------------------------------------------- | 24 | - | 1 | |
| --------------------CACAGATGTATGTCCTCAAGTC------------------------------------------ | 22 | - | 1 | |
| --TAGATATGGCAGAAAGTTCAC------------------------------------------------------------- | 21 | - | 1 | |
| TGTAGATATGGCAGAAAGTTC--------------------------------------------------------------- | 21 | - | 1 | |
| rat | tgtagataTGGCAGAAAGTTCACAGATGTatgtcctcaagtcgccctcttggggacatgagtcaaatgtgagatttttcatatt | |||
| ************************************************************************************ | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000057494 ENSRNOG00000037844 | |||
| rat | ....(((((((..((((.(((((((((.((((((((((((.......)))))))))))).)))...)))))).))))))))))) | 1.000 -30.00 | ||
| rat | chromosome:4:120125664:120125747:-1 | Same_strand|Intronic_coding|ENSRNOT00000057494|ENSRNOG00000037844 ## ENSRNOG00000037844|protein_coding|| |
sblock8757 [novel_cloningOK_multiarm_DicerNOK_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.38/0.46 | 18/26/0.80 | 0.0 0.0 0.0 0.0 | 4.0 0.0 0.0 0.0 | 2 5 1 1 | 0 0 0 0 | 2 1 1 1 | 0 0 0 0 | 0 15 26 17 | 8 -3 0 11 | 5arm 5arm_loop 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.11 0.36 0.54 0.68 | 2 4 6 9 | 10 | 2 | 1 | -2 |
| reads | miRBase family seed | |||
| seed | ----------------GUAACCC----------------------------------------------------------------- | 5 | novel | |
| seed | -AGUUGCU-------------------------------------------------------------------------------- | 2 | novel | |
| seed | --------------------------------------------------AGUGAGG------------------------------- | 1 | novel | |
| seed | ---------------------------------------CAUGAAA------------------------------------------ | 1 | novel | |
| seed | ------------------AACCCAA--------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| ---------------TGTAACCCAAAGAAGTTGGACT--------------------------------------------------- | 22 | - | 5 | |
| TAGTTGCTTTTCCTCTGT---------------------------------------------------------------------- | 18 | - | 1 | |
| TAGTTGCTTTTCCTCTGTAACCCAAA-------------------------------------------------------------- | 26 | 1 | - | |
| --------------------------------------CCATGAAATTCTAGTGAGGGGTTC-------------------------- | 24 | - | 1 | |
| -----------------TAACCCAAAGAAGTTGGACT--------------------------------------------------- | 20 | - | 1 | |
| -------------------------------------------------TAGTGAGGGGTTCAAAGCAACA----------------- | 22 | - | 1 | |
| rat | tagttgcttttcctcTGTAACCCAAAGAAGTTGGACTtccatgaaattctagtgaggggttcaaagcaacatagagggaaagccctag | |||
| **************************************************************************************** | ||||
| rat | (((..((((((((((((((((((..((((..(((....))).....))))......))))).........))))))))))))).))). | 0.430 -27.90 | ||
| rat | chromosome:4:164245336:164245423:-1 | intergenic |
novel_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH (3 loci)
sblock10864 [novel_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.419 | no | no | 0.35/0.58 | 19/25/0.75 | 0.0 4.5 2.1 | 0.0 1.5 3.6 | 1 2 9 | 0 0 0 | 1 2 1 | 0 0 0 | 3 32 1 | 21 -16 5 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.55 0.42 0.43 | 6 8 4 | 12 | 3 | -8 | -1 |
| reads | miRBase family seed | ||||
| seed | ----------------------------------------------------------CCCGAUA---------------------- | 6 | novel | ||
| seed | ----------------------------------------------------------------ACUCUGA---------------- | 2 | novel | ||
| seed | ------------------------------------------GGCUUAG-------------------------------------- | 1 | novel | ||
| seed | ----GCAUUUG---------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------UCUACAU----------------------------------------------- | 1 | novel | ||
| seed | -----------------------------------------------------------------CUCUGAG--------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S2 | T4S1 | T5S1 | |||
| ---------------------------------------------------------TCCCGATACTCTGAGCTAACT--------- | 21 | - | - | 3 | |
| ---------------------------------------------------------TCCCGATACTCTGAGCTAACTTT------- | 23 | - | - | 2 | |
| ---------------------------------------------------------------TACTCTGAGCTAACTTTCTATGT- | 23 | - | - | 2 | |
| --------------------------------ATCTACATGTGGCTTAGCACCCACA------------------------------ | 25 | - | - | 1 | |
| ----------------------------------------------------------------ACTCTGAGCTAACTTTCTATGT- | 22 | - | - | 1 | |
| ---TGCATTTGTACTTCAATCTG---------------------------------------------------------------- | 20 | 1 | - | - | |
| ---------------------------------------------------------TCCCGATACTCTGAGCTAACTTTCT----- | 25 | - | - | 1 | |
| -----------------------------------------TGGCTTAGCACCCACATCC--------------------------- | 19 | - | 1 | - | |
| rat | acaTGCATTTGTACTTCAATCTGtaggaagggATCTACATGTGGCTTAGCACCCACATCCCGATACTCTGAGCTAACTTTCTATGTa | ||||
| *************************************************************************************** | |||||
| rat | (((((......((.((((....(((....((((......(((((........)))))))))..)))..)))).))......))))). | 0.480 -15.70 | |||
| rat | chromosome:7:94706209:94706295:-1 | intergenic |
sblock4358 [novel_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.011 | no | no | 0.42/0.45 | 19/24/0.80 | 2.5 0.7 | 0.2 0.0 | 4 6 | 0 0 | 1 3 | 0 0 | 0 4 | 33 24 | 5arm 3arm | 1 1 | nd nd | 0.37 0.32 | 4 4 | 10 | 3 | -9 | -4 |
| reads | miRBase family seed | ||||
| seed | -----------------------------------------------------------------------------------------AUCUCAA-------------------- | 4 | novel | ||
| seed | ------AUGCCUC------------------------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | -ACACAAU------------------------------------------------------------------------------------------------------------ | 2 | novel | ||
| seed | -------------------------------------------------------------------------------------------CUCAAAC------------------ | 2 | miR-292 | ||
| len | cloning frequencies | ||||
| T1S1 | T3S1 | T5S1 | |||
| ----------------------------------------------------------------------------------------TATCTCAAACTGACTCTCACTCAG---- | 24 | - | 1 | 3 | |
| -----AATGCCTCTTGGAGTACAA-------------------------------------------------------------------------------------------- | 19 | - | - | 2 | |
| ------------------------------------------------------------------------------------------TCTCAAACTGACTCTCACTCAG---- | 22 | 2 | - | - | |
| TACACAATGCCTCTTGGAGTACA--------------------------------------------------------------------------------------------- | 23 | - | - | 1 | |
| TACACAATGCCTCTTGGAGTACAA-------------------------------------------------------------------------------------------- | 24 | - | - | 1 | |
| rat | TACACAATGCCTCTTGGAGTACAAttttgaacccactggaccaccaagtctgtacagccaagaactgttgggatcttggtcacagtgaTATCTCAAACTGACTCTCACTCAGcata | ||||
| ******************************************************************************************************************** | |||||
| rat | ......((((....((((((.((..(((((...((((((((((....((((..((((.......))))..))))..))))).))))).....))))).)))))).))....)))). | 0.990 -30.50 | |||
| rat | chromosome:15:232898:233013:-1 | intergenic |
sblock8748 [novel_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.348 | no | no | 0.35/0.57 | 18/25/0.80 | 1.6 0.0 2.2 0.0 | 1.8 0.0 2.8 0.0 | 34 1 4 1 | 0 0 0 0 | 4 1 1 1 | 0 0 0 0 | 2 14 44 18 | 24 14 -20 24 | 5arm 5arm 5arm_loop_3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.32 0.39 0.55 0.50 | 5 7 7 5 | 46 | 4 | 0 | 0 |
| reads | miRBase family seed | |||||
| seed | ---ACAAUGC------------------------------------------------------------------------------------------------------------ | 24 | novel | |||
| seed | --------GCCUAUU------------------------------------------------------------------------------------------------------- | 10 | novel | |||
| seed | ----CAAUGCC----------------------------------------------------------------------------------------------------------- | 5 | novel | |||
| seed | ---------------------------------------------------GUAAGCA------------------------------------------------------------ | 2 | novel | |||
| seed | ---------------AAGCUCU------------------------------------------------------------------------------------------------ | 1 | novel | |||
| seed | ---------------------------------------------CAUUCUG------------------------------------------------------------------ | 1 | novel | |||
| seed | ------------------------------------------------UCUGUAA--------------------------------------------------------------- | 1 | novel | |||
| seed | -----------------------------------------------------------------------------------GUGAAGU---------------------------- | 1 | novel | |||
| seed | ---------CCUAUUA------------------------------------------------------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T3S1 | T4S2 | T5S1 | |||
| --TACAATGCCTATTAAGCTCTCA---------------------------------------------------------------------------------------------- | 22 | - | 1 | 1 | 14 | |
| -------TGCCTATTAAGCTCTCAACT------------------------------------------------------------------------------------------- | 20 | - | - | - | 10 | |
| --TACAATGCCTATTAAGCTCTCAACT------------------------------------------------------------------------------------------- | 25 | 1 | - | 1 | 5 | |
| ---ACAATGCCTATTAAGCTCTCAACT------------------------------------------------------------------------------------------- | 24 | - | - | - | 5 | |
| --------------------------------------------------TGTAAGCAAGAACAAAGGTGA----------------------------------------------- | 21 | - | - | - | 2 | |
| --------------------------------------------CCATTCTGTAAGCAAGAACA------------------------------------------------------ | 20 | - | - | - | 1 | |
| --TACAATGCCTATTAAGCTCTCAAC-------------------------------------------------------------------------------------------- | 24 | - | - | - | 1 | |
| -----------------------------------------------TTCTGTAAGCAAGAACAAAG--------------------------------------------------- | 20 | - | - | - | 1 | |
| --------------TAAGCTCTCAACTAGGACCCCCC--------------------------------------------------------------------------------- | 23 | - | - | - | 1 | |
| --------GCCTATTAAGCTCTCAACT------------------------------------------------------------------------------------------- | 19 | - | - | - | 1 | |
| ----------------------------------------------------------------------------------TGTGAAGTCCTTTCTGGC------------------ | 18 | - | - | - | 1 | |
| rat | tgTACAATGCCTATTAAGCTCTCAACTaggaccccccccccccaccattctgtaagcaagaacaaaggtgattggaagggtttgtgaagtcctttctggctgtggaaggtgatgtata | |||||
| ********************************************************************************************************************** | ||||||
| rat | ((((((.(((((.(((((((.......((((((((..((...((((.((((.......))))....))))...))..)))........)))))....)))).))).))))).)))))) | 0.870 -29.80 | ||||
| rat | chromosome:4:164241189:164241306:-1 | intergenic ## {Repeats: dust 164241270 164241275 0 class=dust} |
novel_cloningOK_multiarm_nonpairedHIGH (3 loci)
block1486239 [novel_cloningOK_multiarm_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.351 | no | no | 0.33/0.50 | 20/24/1.00 | 0.0 0.0 | 0.0 0.0 | 9 1 | 0 0 | 4 1 | 0 0 | 6 14 | 0 -12 | 5arm 5arm_loop_3arm | 1 1 | nd nd | 0.35 0.58 | 3 10 | 11 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -------CAGAAUG-------------------------------------------------- | 10 | novel | |||
| seed | ---------------CCUCUUA------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S2 | T3S2 | T5S1 | T5S2 | |||
| ------CCAGAATGGCCTCTTACAGA-------------------------------------- | 20 | 2 | 1 | 2 | 5 | |
| --------------GCCTCTTACAGATAAATTGAGTTT-------------------------- | 24 | - | - | 1 | - | |
| rat | gatttcCCAGAATGGCCTCTTACAGAtaaattgagttttgccgaagccaaaggtctagaaattg | |||||
| **************************************************************** | ||||||
| rat | ((((((..(((.((((.((...((((..........))))..)).))))....))).)))))). | 0.950 -11.60 | ||||
| rat | chromosome:3:112550663:112550726:1 | intergenic |
block2247844 [novel_cloningOK_multiarm_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.408 | no | no | 0.37/0.48 | 19/23/0.92 | 0.8 0.0 0.0 | 0.0 0.0 0.0 | 8 1 1 | 0 0 0 | 3 1 1 | 0 0 0 | 13 23 31 | 5 -2 -13 | 5arm 5arm_loop 5arm_loop_3arm | 2 2 2 | nd nd nd | 0.35 0.50 0.48 | 3 3 5 | 12 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | --------------AGUCAGU-------------------------------------------------------------------- | 8 | novel | ||
| seed | -----------------CAGUCAU----------------------------------------------------------------- | 2 | novel | ||
| seed | ------------------------AGAGUCA---------------------------------------------------------- | 1 | novel | ||
| seed | --------------------------------AGAGCGA-------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S1 | |||
| -------------TAGTCAGTCATAGAGTCATAGAG----------------------------------------------------- | 23 | 1 | 2 | 4 | |
| ----------------TCAGTCATAGAGTCATAGAG----------------------------------------------------- | 20 | - | - | 2 | |
| -------------TAGTCAGTCATAGAGTCAT--------------------------------------------------------- | 19 | - | - | 1 | |
| -----------------------TAGAGTCATAGAGCGAAGGA---------------------------------------------- | 20 | - | - | 1 | |
| -------------------------------TAGAGCGAAGGATAGCTAGCTGA----------------------------------- | 23 | - | - | 1 | |
| rat | gcttcagcagaacTAGTCAGTCATAGAGTCATAGAGcgaaggatagctagctgatgacagtgtcttccttacagtgtgcaagcgaggca | ||||
| ***************************************************************************************** | |||||
| rat | (((((.(((..(((((..((.(((...(((((..(((..((.....)).))).))))).))).))..))...))).)))....))))). | 0.500 -21.40 | |||
| rat | chromosome:7:112749339:112749427:1 | intergenic |
sblock5546 [novel_cloningOK_multiarm_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.232 | no | no | 0.40/0.58 | 19/21/0.80 | 0.0 0.0 0.4 | 0.0 0.0 0.0 | 4 1 5 | 0 0 0 | 2 1 3 | 0 0 0 | 35 15 2 | 3 15 26 | 5arm 3arm 3arm | 1 1 1 | nd nd nd | 0.45 0.42 0.33 | 5 3 3 | 10 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ------------------------------------ACCAACU------------------------------------------------------------------------ | 4 | novel | |||
| seed | ---------------------------------------------------------------------------------------------GGGCAAA--------------- | 4 | novel | |||
| seed | ----------------------------------------------------------------------------------GGUGUGC-------------------------- | 1 | novel | |||
| seed | -----------------------------------------------------------------------------------------------GCAAAUG------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T5S1 | T5S2 | |||
| --------------------------------------------------------------------------------------------TGGGCAAATGGGTCAAAGGAG-- | 21 | - | - | 3 | 1 | |
| -----------------------------------TACCAACTCAGATTGGAAGT------------------------------------------------------------ | 20 | - | - | 3 | 1 | |
| ----------------------------------------------------------------------------------------------GGCAAATGGGTCAAAGGAG-- | 19 | - | 1 | - | - | |
| ---------------------------------------------------------------------------------GGGTGTGCCAATGGGCAAA--------------- | 19 | 1 | - | - | - | |
| rat | gttgctggggacttagagaagtgtccttttgggggTACCAACTCAGATTGGAAGTgttaagaagtgagagaagctgactggGGGTGTGCCAATGGGCAAATGGGTCAAAGGAGgc | |||||
| ******************************************************************************************************************* | ||||||
| rat | ((..((...((((((......(((((.......(((((...(((((.((((.....((........)).....)))))))))...)))))...)))))..))))))...))..)) | 0.850 -27.80 | ||||
| rat | chromosome:18:63572448:63572562:-1 | intergenic |
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