other hairpins
novel_gcHIGH_loopOverlap_nonpairedHIGH (3 loci)
block897778 [novel_gcHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.184 | no | no | 0.91/0.91 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 16 | -4 | 3arm_loop | 1 | nd | 0.41 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------UGACGGG------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S2 | |||
| -------------------------------GTGACGGGGGGCGGGGGGGGGG---------------- | 22 | 1 | |
| rat | gtcagattgttgaacttttcctttattgctgGTGACGGGGGGCGGGGGGGGGGatggtaaagaggtgac | ||
| ********************************************************************* | |||
| rat | ((((..((.(((..(((..(((((.((.(((....))).))..)))))..)))....))).))..)))) | 1.000 -20.00 |
| rat | chromosome:1:170914350:170914418:-1 | intergenic ## {Repeats: dust 170914366 170914382 0 class=dust} |
block1675027 [novel_gcHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.113 | no | no | 0.91/0.91 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 16 | -3 | 5arm_loop_3arm | 1 | nd | 0.36 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------GAGGCCG------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| ----------------GGAGGCCGCGGGGCCGCCGCAG---------------------------------------- | 22 | 1 | |
| rat | gcgagtggagggcgctGGAGGCCGCGGGGCCGCCGCAGcggataggccaggtggccaggcacgcagaaaaacggcgcg | ||
| ****************************************************************************** | |||
| rat | (((.((.....(((.((..((((((..((((.(((...)))...))))..))))))...)))))......))..))). | 0.990 -35.10 |
| rat | chromosome:4:124916446:124916523:1 | intergenic |
novel_lenNOK_5varHIGH_mirtron_randfoldOK (3 loci)
block1031660 [novel_lenNOK_5varHIGH_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.57/0.62 | 19/26/0.12 | 1.2 | 2.8 | 8 | 0 | 2 | 0 | 27 | 10 | 3arm | 1 | 3 | 0.17 | 2 | 8 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------------GUGGUGA--------------------------------------------- | 5 | novel | |
| seed | ----------------------------------------------------------------------GGUGAGC------------------------------------------- | 3 | novel | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| -------------------------------------------------------------------TGTGGTGAGCCATTGCCCTCTTCCCC--------------------------- | 26 | 2 | 2 | |
| ---------------------------------------------------------------------TGGTGAGCCATTGCCCTCT-------------------------------- | 19 | - | 3 | |
| -------------------------------------------------------------------TGTGGTGAGCCATTGCCCTCTTC------------------------------ | 23 | - | 1 | |
| rat | gcccagcggcaggctgaacggtgagggcatggtcagatactacaggagtggagttcattcagaggccTGTGGTGAGCCATTGCCCTCTTCCCCcagccgccttcaagaggctgagaagca | |||
| ************************************************************************************************************************ | ||||
| >>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000038016 ENSRNOG00000027456 Cdc42bpg_predicted | |||
| rat | ((.(((((((.(((((...((.(((((((((((....(((((((((..((((.....))))....))))))))).))))).))))))..))..))))))))........))))....)). | 0.540 -51.60 | ||
| rat | chromosome:1:209093355:209093474:1 | Same_strand|Intronic_coding|ENSRNOT00000038016|ENSRNOG00000027456 ## ENSRNOG00000027456|protein_coding|Cdc42bpg_predicted| |
block1203008 [novel_lenNOK_5varHIGH_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.43/0.55 | 18/23/0.62 | 2.2 | 5.1 | 8 | 0 | 3 | 0 | 16 | 7 | 3arm | 2 | 0 | 0.11 | 1 | 8 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | --------------------------------------------------------------------CUAUCCU------------------------------------ | 5 | novel | ||
| seed | --------------------------------------------------------------------------UGCUCUU------------------------------ | 3 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T4S2 | |||
| -------------------------------------------------------------------------CTGCTCTTCTGTCTTTGCCCAG---------------- | 22 | 2 | - | 1 | |
| -------------------------------------------------------------------TCTATCCTGCTCTTCTGT-------------------------- | 18 | 2 | - | - | |
| -------------------------------------------------------------------TCTATCCTGCTCTTCTGTCTTTG--------------------- | 23 | 1 | 1 | - | |
| -------------------------------------------------------------------TCTATCCTGCTCTTCTGTC------------------------- | 19 | 1 | - | - | |
| rat | agggctgggctggggtggcctgggctgggctggggagtagtgacagccctgtggaatatgtactaggTCTATCCTGCTCTTCTGTCTTTGCCCAGactcagatgatgccct | ||||
| *************************************************************************************************************** | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000028589 ENSRNOG00000021042 Psmd4 | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000047862 ENSRNOG00000021042 Psmd4 | ||||
| rat | (((((....(((((.....((((((.((((.(((((((((.((.((.((((((.......))).))).)).))))))))))).))))..)))))).))))).....))))) | 1.000 -50.70 | |||
| rat | chromosome:2:189934219:189934329:-1 | Same_strand|Intronic_coding|ENSRNOT00000028589|ENSRNOG00000021042 ## ENSRNOG00000021042|protein_coding|Psmd4|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 [Source:RefSeq_peptide;Acc:NP_112621] |
block1693810 [novel_lenNOK_5varHIGH_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.56/0.59 | 18/22/0.50 | 2.8 | 0.8 | 4 | 0 | 3 | 0 | 5 | 22 | 3arm | 1 | 0 | 0.23 | 2 | 4 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ------------------------------------------------------------------------------------CCCUGAC------------------ | 2 | novel | ||
| seed | ---------------------------------------------------------------------------------UGUCCCU--------------------- | 1 | novel | ||
| seed | --------------------------------------------------------------------------------------CUGACCU---------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T3S2 | |||
| -----------------------------------------------------------------------------------TCCCTGACCTCTCCTTTCC------- | 19 | 1 | - | - | |
| --------------------------------------------------------------------------------CTGTCCCTGACCTCTCCTTTCC------- | 22 | - | 1 | - | |
| -------------------------------------------------------------------------------------CCTGACCTCTCCTTTCCA------ | 18 | - | - | 1 | |
| -----------------------------------------------------------------------------------TCCCTGACCTCTCCTTTCCAG----- | 21 | - | 1 | - | |
| rat | ggtcatggggaggaacaggcccaaggacgagtggtgaggggaaactggtcaaaatcaatgaaactgtagtttcccaactcCTGTCCCTGACCTCTCCTTTCCAGgattc | ||||
| ************************************************************************************************************* | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000056049 ENSRNOG00000037145 | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>> | ENSRNOT00000017472 ENSRNOG00000012999 Phb2 | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>> | ENSRNOT00000056040 ENSRNOG00000012999 Phb2 | ||||
| rat | ((((.(((..((((..(((..((.((((.((..((...(((((((((.(((.......))).....))))))))).))..)))))).)).))).))))..))).)))). | 1.000 -42.10 | |||
| rat | chromosome:4:160835984:160836092:1 | Same_strand|Intronic_coding|ENSRNOT00000017472|ENSRNOG00000012999 ## ENSRNOG00000012999|protein_coding|Phb2|Prohibitin-2 (B-cell receptor-associated protein BAP37) (BAP-37). [Source:UniProtKB/Swiss-Prot;Acc:Q5XIH7] ## ENSRNOG00000037145|protein_coding|| |
novel_lenNOK_Multihit_shortStem_5varHIGH_loopOverlap_nonpairedHIGH (3 loci)
block828511 [novel_lenNOK_Multihit_shortStem_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.037 | no | no | 0.43/0.47 | 19/23/0.67 | 1.7 | 0.7 | 3 | 0 | 2 | 0 | 4 | -6 | 3arm_loop | 24 | nd | 0.32 | 2 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------CACCAAG------------------- | 1 | novel | |
| seed | ---------------------------CAAGUCU---------------- | 1 | novel | |
| seed | --------------------------CCAAGUC----------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S1 | T5S1 | |||
| -------------------------ACCAAGTCTCCTTATCAGGA----- | 20 | 1 | - | |
| --------------------------CCAAGTCTCCTTATCAGGA----- | 19 | 1 | - | |
| -----------------------TCACCAAGTCTCCTTATCAGGAA---- | 23 | - | 1 | |
| rat | tgacctctggaaagagactgtgtTCACCAAGTCTCCTTATCAGGAAgtca | |||
| ************************************************** | ||||
| rat | .(((.(((((.((((((((..........)))))).)).)))))..))). | 1.000 -14.00 | ||
| rat | chromosome:1:14557674:14557723:-1 | intergenic |
block1714392 [novel_lenNOK_Multihit_shortStem_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.179 | no | no | 0.55/0.58 | 19/22/0.50 | 1.5 | 0.0 | 2 | 0 | 2 | 0 | 2 | -3 | 3arm | 129 | nd | 0.32 | 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------ACGGCAC---------------- | 1 | novel | |
| seed | -----------------------------------GCACAGU------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T4S2 | |||
| ----------------------------------GGCACAGTCAAGGCTGAGA-- | 19 | 1 | - | |
| -------------------------------AACGGCACAGTCAAGGCTGAGA-- | 22 | - | 1 | |
| rat | gttccagtatgactctatccacatcaagttcAACGGCACAGTCAAGGCTGAGAat | |||
| ******************************************************* | ||||
| rat | ((((((((.(((((....((..............))...)))))..)))).)))) | 1.000 -10.64 | ||
| rat | chromosome:5:8009644:8009698:-1 | intergenic |
block961840 [novel_lenNOK_Multihit_shortStem_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.543 | no | no | 0.50/0.50 | 26/26/0.00 | 4.5 | 4.5 | 2 | 0 | 1 | 0 | 3 | -25 | 3arm | 33 | nd | 0.35 | 2 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------CACAGGA--------------------- | 1 | novel |
| seed | ---------------------------------------CUCAAGU------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -----------------------------------------------TCACAGGACCTCCTTTGTCCAAGAAC--- | 26 | 1 | |
| --------------------------------------TCTCAAGTGTCACAGGACCTCCTTTG------------ | 26 | 1 | |
| rat | cagcacttctactgttcaggagctcaagtgtctcagcaTCTCAAGTGTCACAGGACCTCCTTTGTCCAAGAACtgg | ||
| **************************************************************************** | |||
| rat | (((..(((..((.....(((((.((..(((.....((((.....)))))))..)).)))))..))..)))..))). | 0.500 -14.60 |
| rat | chromosome:1:51062957:51063032:1 | intergenic ## {Repeats: trf 1 22 0 class=trf,trf 1 23 0 class=trf} |
novel_lenNOK_cloningHIGH_5varHIGH_loopOverlap (3 loci)
block1469607 [novel_lenNOK_cloningHIGH_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.322 | no | no | 0.40/0.53 | 18/27/0.62 | 1.9 0.0 0.0 | 1.3 0.0 0.0 | 21 22 8 | 0 0 0 | 8 1 2 | 0 0 0 | 22 11 4 | -20 10 19 | 3arm 3arm 3arm | 1 1 1 | nd nd nd | 0.35 0.25 0.41 | 3 2 4 | 81 | 8 | na | na |
| reads | miRBase family seed | |||||||||
| seed | ---------------------------------------------------GCACGUA---------------------------------------- | 24 | novel | |||||||
| seed | ----------------------------------------------------------------CCACUAU--------------------------- | 23 | novel | |||||||
| seed | -----------------------------------------------GUUUGCA-------------------------------------------- | 13 | novel | |||||||
| seed | --------------------------------------------------UGCACGU----------------------------------------- | 9 | novel | |||||||
| seed | -------------------------------------------------------------------------AAGCAUG------------------ | 8 | novel | |||||||
| seed | -----------------------------------------------------------------------CUAAGCA-------------------- | 2 | novel | |||||||
| seed | ---------------------------------------------------------AACCACU---------------------------------- | 1 | novel | |||||||
| seed | -----------------------------------------------------------------CACUAUC-------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ---------------------------------------------------------------TCCACTATCTAAGCATGCAGTCTG----------- | 24 | - | - | - | - | - | - | 22 | - | |
| --------------------------------------------------TGCACGTAACCACTCCACT----------------------------- | 19 | 3 | 1 | 1 | 1 | 1 | 1 | 6 | 1 | |
| ----------------------------------------------TGTTTGCACGTAACCACTCCACT----------------------------- | 23 | - | - | 1 | - | - | - | 11 | - | |
| ------------------------------------------------------------------------TAAGCATGCAGTCTGGAACTCT---- | 22 | - | - | - | - | - | - | 8 | - | |
| --------------------------------------------------TGCACGTAACCACTCCACTATCTAAG---------------------- | 26 | 1 | 1 | 1 | - | - | 1 | 4 | - | |
| -------------------------------------------------TTGCACGTAACCACTCCACTATCTAAG---------------------- | 27 | - | 1 | - | 1 | - | - | 2 | - | |
| -------------------------------------------------TTGCACGTAACCACTCCACT----------------------------- | 20 | 3 | - | - | - | - | - | - | - | |
| -------------------------------------------------TTGCACGTAACCACTCCA------------------------------- | 18 | - | - | - | - | - | 1 | 1 | - | |
| ----------------------------------------------------------------------TCTAAGCATGCAGTCTGGAACTCT---- | 24 | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------------------TAACCACTCCACTATCTAAG---------------------- | 20 | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------------TGTTTGCACGTAACCACTC--------------------------------- | 19 | - | - | - | - | - | 1 | - | - | |
| --------------------------------------------------TGCACGTAACCACTCCACTA---------------------------- | 20 | - | - | - | - | - | - | 1 | - | |
| ---------------------------------------------------------------TCCACTATCTAAGCATGCAGTC------------- | 22 | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------------------------TCTAAGCATGCAGTCTGGAA-------- | 20 | - | - | - | - | - | - | - | 1 | |
| ----------------------------------------------------------------CCACTATCTAAGCATGCAG--------------- | 19 | - | - | - | - | - | - | 1 | - | |
| rat | gccctgttactcattactgtagtagtacagacgagtggactggctcTGTTTGCACGTAACCACTCCACTATCTAAGCATGCAGTCTGGAACTCTagca | |||||||||
| ************************************************************************************************** | ||||||||||
| rat | ((...(((.((....((((((...((..(((..((((((.(((...(((....)))...))).)))))).)))..)).))))))..)))))....)). | 0.680 -22.40 | ||||||||
| rat | chromosome:3:76947118:76947215:1 | intergenic |
block1094204 [novel_lenNOK_cloningHIGH_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.870 | no | no | 0.42/0.68 | 18/26/0.48 | 13.5 | 12.2 | 46 | 0 | 10 | 0 | 6 | -12 | 3arm | 1 | nd | 0.17 | 2 | 99 | 10 | 0 | 4 |
| reads | miRBase family seed | |||||||||||
| seed | ------------------------AGCAACA---------------------------------------------- | 25 | novel | |||||||||
| seed | ------------------------------------------CCCCUCA---------------------------- | 25 | novel | |||||||||
| seed | -----------------------------------------------CACACCU----------------------- | 16 | novel | |||||||||
| seed | ------------------------------------------------------GCCGUAG---------------- | 7 | novel | |||||||||
| seed | ---------------------------------GCAAACU------------------------------------- | 5 | novel | |||||||||
| seed | ------------CCCCUCG---------------------------------------------------------- | 5 | novel | |||||||||
| seed | --------------------------------------------------ACCUGCC-------------------- | 4 | novel | |||||||||
| seed | --------------------------------GGCAAAC-------------------------------------- | 2 | novel | |||||||||
| seed | ------------------------------AAGGCAA---------------------------------------- | 2 | novel | |||||||||
| seed | ---------------------GGUAGCA------------------------------------------------- | 2 | novel | |||||||||
| seed | --------------------------CAACAAG-------------------------------------------- | 1 | novel | |||||||||
| seed | ---------------------------AACAAGG------------------------------------------- | 1 | novel | |||||||||
| seed | ----------------------------ACAAGGC------------------------------------------ | 1 | novel | |||||||||
| seed | -------------------GUGGUAG--------------------------------------------------- | 1 | novel | |||||||||
| seed | -----------------CGGUGGU----------------------------------------------------- | 1 | novel | |||||||||
| seed | ----------------------------------------CUCCCCU------------------------------ | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -----------------------TAGCAACAAGGCAAACTCTCCCCTC----------------------------- | 25 | 2 | - | - | - | - | - | - | - | 8 | - | |
| -----------------------------------------TCCCCTCACACCTGCCGTAGTACCCC---------- | 26 | - | - | 1 | - | 1 | - | - | - | 7 | - | |
| -----------------------------------------TCCCCTCACACCTGCCGTAGT--------------- | 21 | 1 | 1 | - | - | - | - | 1 | 1 | 3 | - | |
| ----------------------------------------------TCACACCTGCCGTAGTACC------------ | 19 | - | - | 1 | - | - | - | - | - | 6 | - | |
| -----------------------TAGCAACAAGGCAAACTCTCCCC------------------------------- | 23 | - | - | - | - | - | - | - | - | 5 | - | |
| -----------------------TAGCAACAAGGCAAACTC------------------------------------ | 18 | 1 | - | - | - | - | - | - | - | 4 | - | |
| -----------------------------------------TCCCCTCACACCTGCCGTA----------------- | 19 | - | - | - | 1 | - | - | - | - | 3 | - | |
| ----------------------------------------------TCACACCTGCCGTAGTACCCCCTG------- | 24 | - | - | - | - | - | - | - | - | 4 | - | |
| -----------------------------------------TCCCCTCACACCTGCCGTAGTACCC----------- | 25 | - | 2 | - | - | - | - | - | - | 2 | - | |
| --------------------------------GGCAAACTCTCCCCTCACACCTG---------------------- | 23 | 1 | - | - | 1 | - | - | - | 1 | - | - | |
| ----------------------------------------------TCACACCTGCCGTAGTACCC----------- | 20 | - | - | - | - | - | - | - | - | 3 | - | |
| -----------------------TAGCAACAAGGCAAACTCTC---------------------------------- | 20 | - | - | 1 | - | - | - | - | - | 2 | - | |
| -----------------------------------------------------TGCCGTAGTACCCCCTGG------ | 18 | - | - | - | - | - | - | - | - | 3 | - | |
| -----------------------------------------------------TGCCGTAGTACCCCCTGGCTG--- | 21 | - | 1 | - | - | - | - | - | - | 2 | - | |
| -----------TCCCCTCGGTGGTAGCAAC----------------------------------------------- | 19 | 1 | - | - | - | - | - | - | - | 2 | - | |
| -----------TCCCCTCGGTGGTAGCAACAAGG------------------------------------------- | 23 | - | - | - | - | - | - | - | - | 2 | - | |
| -------------------------------------------------CACCTGCCGTAGTACCCCCTG------- | 21 | - | - | - | - | - | - | - | - | 2 | - | |
| -----------------------------------------------------TGCCGTAGTACCCCCTGGCT---- | 20 | - | - | - | - | - | - | - | - | - | 1 | |
| ----------------------------------------------TCACACCTGCCGTAGTACCCC---------- | 21 | - | - | 1 | - | - | - | - | - | - | - | |
| -----------------------------CAAGGCAAACTCTCCCCTCACACCT----------------------- | 25 | - | - | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------------TCACACCTGCCGTAGTACCCCCT-------- | 23 | - | - | 1 | - | - | - | - | - | - | - | |
| --------------------TGGTAGCAACAAGGCAAACTCTC---------------------------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| ------------------GGTGGTAGCAACAAGGCAAA--------------------------------------- | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------TAGCAACAAGGCAAACTCT----------------------------------- | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------------CACCTGCCGTAGTACCCCC--------- | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| ----------------TCGGTGGTAGCAACAAGGCA----------------------------------------- | 20 | 1 | - | - | - | - | - | - | - | - | - | |
| --------------------------------GGCAAACTCTCCCCTCAC--------------------------- | 18 | - | - | - | - | - | - | - | - | 1 | - | |
| --------------------TGGTAGCAACAAGGCAAACT------------------------------------- | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| -------------------------------AGGCAAACTCTCCCCTCACACCT----------------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| --------------------------CAACAAGGCAAACTCTCCCCTCACAC------------------------- | 26 | - | - | - | - | - | - | - | - | 1 | - | |
| ---------------------------AACAAGGCAAACTCTCCCCTCACA-------------------------- | 24 | - | - | - | - | - | - | - | - | 1 | - | |
| -------------------------------AGGCAAACTCTCCCCTCACAC------------------------- | 21 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------TAGCAACAAGGCAAACTCTCCC-------------------------------- | 22 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------TCCCCTCACACCTGCCGT------------------ | 18 | - | - | - | - | - | 1 | - | - | - | - | |
| ---------------------------------------TCTCCCCTCACACCTGCCGT------------------ | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------CAAGGCAAACTCTCCCCTCACAC------------------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| -------------------------GCAACAAGGCAAACTCTCCCC------------------------------- | 21 | - | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------GGCAAACTCTCCCCTCACAC------------------------- | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------------CACCTGCCGTAGTACCCCCT-------- | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| rat | ggacagtgccctcccctcggtggTAGCAACAAGGCAAACTCTCCCCTCACACCTGCCGTAGTACCCCCTGGctgccc | |||||||||||
| ***************************************************************************** | ||||||||||||
| rat | ((.(((........((..((.(((.((.((..((((.................)))))).)))))))..))))))). | 0.410 -14.43 | ||||||||||
| rat | chromosome:20:5563188:5563264:1 | intergenic |
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