other hairpins
novel_lenNOK_cloningHIGH_5varHIGH_loopOverlap (3 loci)
block1848507 [novel_lenNOK_cloningHIGH_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.136 | no | no | 0.33/0.50 | 18/23/0.58 | 3.2 | 2.2 | 31 | 0 | 8 | 0 | 6 | -15 | 3arm | 1 | nd | 0.27 | 3 | 55 | 8 | na | na |
| reads | miRBase family seed | |||||||||
| seed | --------------------------------------GAUACAA------------------- | 17 | novel | |||||||
| seed | ------------------------------------GUGAUAC--------------------- | 13 | novel | |||||||
| seed | ---------------------------------CCUGUGA------------------------ | 12 | novel | |||||||
| seed | -----------------------------------------ACAAUUU---------------- | 3 | novel | |||||||
| seed | -----------------------GGUUCAU---------------------------------- | 3 | novel | |||||||
| seed | --------------------------UCAUUGU------------------------------- | 2 | novel | |||||||
| seed | ---------------------------CAUUGUC------------------------------ | 2 | novel | |||||||
| seed | ------------------------------UGUCCUG--------------------------- | 1 | novel | |||||||
| seed | -------------------------UUCAUUG-------------------------------- | 1 | novel | |||||||
| seed | ------------------------GUUCAUU--------------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S2 | T4S1 | T5S1 | T5S2 | |||
| --------------------------------TCCTGTGATACAATTTCCATGGG--------- | 23 | - | - | 1 | - | 2 | 1 | 6 | - | |
| -------------------------------------TGATACAATTTCCATGGGCC------- | 20 | 2 | - | - | - | - | - | 7 | - | |
| -----------------------------------TGTGATACAATTTCCATGG---------- | 19 | 1 | 1 | - | - | - | - | 4 | - | |
| -------------------------------------TGATACAATTTCCATGGGC-------- | 19 | 2 | - | - | - | - | - | 4 | - | |
| -----------------------------------TGTGATACAATTTCCATGGGCC------- | 22 | - | - | - | - | - | - | 4 | 1 | |
| ----------------------TGGTTCATTGTCCTGTGATACAA------------------- | 23 | - | - | - | - | - | - | 3 | - | |
| ----------------------------------------TACAATTTCCATGGGCCG------ | 18 | - | - | - | - | - | - | 3 | - | |
| -------------------------TTCATTGTCCTGTGATACA-------------------- | 19 | - | - | - | - | - | - | 2 | - | |
| --------------------------------TCCTGTGATACAATTTCCA------------- | 19 | - | - | - | - | - | - | 2 | - | |
| --------------------------TCATTGTCCTGTGATACAA------------------- | 19 | - | - | - | - | - | - | 2 | - | |
| -----------------------------------TGTGATACAATTTCCATG----------- | 18 | - | - | - | - | - | - | 1 | - | |
| -------------------------------------TGATACAATTTCCATGGGCCGT----- | 22 | 1 | - | - | - | - | - | - | - | |
| -----------------------------TTGTCCTGTGATACAATTTC--------------- | 20 | - | - | - | - | - | - | 1 | - | |
| -----------------------------------TGTGATACAATTTCCATGGGC-------- | 21 | - | 1 | - | - | - | - | - | - | |
| ------------------------GTTCATTGTCCTGTGATACA-------------------- | 20 | - | - | - | - | - | - | 1 | - | |
| -------------------------------------TGATACAATTTCCATGGG--------- | 18 | - | - | - | 1 | - | - | - | - | |
| -----------------------GGTTCATTGTCCTGTGATACA-------------------- | 21 | - | - | - | - | - | - | 1 | - | |
| rat | ctaggtcgtagtctctggtcttTGGTTCATTGTCCTGTGATACAATTTCCATGGGCCGtttagt | |||||||||
| **************************************************************** | ||||||||||
| rat | (((((.((..((((.(((...(((..((((......))))..)))...))).))))))))))). | 0.980 -15.40 | ||||||||
| rat | chromosome:5:79246403:79246466:1 | intergenic |
novel_lenNOK_cloningHIGH_Multihit_loopOverlap_nonpairedHIGH (3 loci)
block843602 [novel_lenNOK_cloningHIGH_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.333 | no | no | 0.33/0.37 | 19/23/0.01 | 0.0 | 0.0 | 308 | 0 | 10 | 0 | 26 | -2 | 5arm_loop | 39 | nd | 0.42 | 3 | 463 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | ---------------------------CACAACU------------------------------------------------------------ | 461 | novel | |||||||||
| seed | ----------------------------ACAACUU----------------------------------------------------------- | 2 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --------------------------ACACAACTTCATCAGTGAA------------------------------------------------- | 19 | 40 | 25 | 16 | 14 | 3 | 8 | 7 | 23 | 308 | 13 | |
| --------------------------ACACAACTTCATCAGTGAATT----------------------------------------------- | 21 | - | - | - | - | - | - | - | 1 | 1 | - | |
| ---------------------------CACAACTTCATCAGTGAATTTC--------------------------------------------- | 22 | - | - | - | - | - | - | - | - | 1 | - | |
| --------------------------ACACAACTTCATCAGTGAATTTC--------------------------------------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| ---------------------------CACAACTTCATCAGTGAAT------------------------------------------------ | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| --------------------------ACACAACTTCATCAGTGAAT------------------------------------------------ | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| rat | ggtttctttcttgaaggaaagcagtgACACAACTTCATCAGTGAAtttctccattggaattggttcatcctttaatgcctctgggaagtcccca | |||||||||||
| ********************************************************************************************** | ||||||||||||
| rat | ((...((((((.((.((((((..((((..(((.(((..(((((........)))))))))))..)))).))))....)))).))))))...)). | 0.580 -19.30 | ||||||||||
| rat | chromosome:1:49869920:49870013:-1 | intergenic |
block962004 [novel_lenNOK_cloningHIGH_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.514 | no | no | 0.33/0.43 | 19/24/0.03 | 0.0 | 0.0 | 308 | 0 | 10 | 0 | 19 | -2 | 5arm_loop_3arm | 39 | nd | 0.42 | 3 | 471 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | --------------------CACAACU----------------------------------------------------- | 461 | novel | |||||||||
| seed | ------------------AACACAA------------------------------------------------------- | 7 | novel | |||||||||
| seed | ---------------------ACAACUU---------------------------------------------------- | 2 | novel | |||||||||
| seed | ---------------AGCAACA---------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------------------ACACAACTTCATCAGTGAA------------------------------------------ | 19 | 40 | 25 | 16 | 14 | 3 | 8 | 7 | 23 | 308 | 13 | |
| -----------------CAACACAACTTCATCAGTGA------------------------------------------- | 20 | - | 1 | 1 | - | - | - | - | 1 | 3 | - | |
| -------------------ACACAACTTCATCAGTGAATT---------------------------------------- | 21 | - | - | - | - | - | - | - | 1 | 1 | - | |
| --------------CAGCAACACAACTTCATCAGTGA------------------------------------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------CAACACAACTTCATCAGTGAATTT--------------------------------------- | 24 | - | 1 | - | - | - | - | - | - | - | - | |
| -------------------ACACAACTTCATCAGTGAATTTC-------------------------------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| --------------------CACAACTTCATCAGTGAATTTC-------------------------------------- | 22 | - | - | - | - | - | - | - | - | 1 | - | |
| -------------------ACACAACTTCATCAGTGAAT----------------------------------------- | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| --------------------CACAACTTCATCAGTGAAT----------------------------------------- | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| rat | ttcttgaaggaaagcagcaACACAACTTCATCAGTGAAtttcgccattggaattggttcatcctttaatgcctctgggaa | |||||||||||
| ******************************************************************************** | ||||||||||||
| rat | .((((..(((((((....(((.(((.((((...(((.....)))...)))).))))))....))))....)))..)))). | 0.710 -14.10 | ||||||||||
| rat | chromosome:1:51120443:51120522:1 | intergenic |
block964078 [novel_lenNOK_cloningHIGH_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.659 | no | no | 0.33/0.43 | 19/24/0.03 | 0.0 | 0.0 | 308 | 0 | 10 | 0 | 19 | -2 | 5arm_loop | 39 | nd | 0.37 | 3 | 471 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | --------------------CACAACU----------------------------------------------------- | 461 | novel | |||||||||
| seed | ------------------AACACAA------------------------------------------------------- | 7 | novel | |||||||||
| seed | ---------------------ACAACUU---------------------------------------------------- | 2 | novel | |||||||||
| seed | ---------------AGCAACA---------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------------------ACACAACTTCATCAGTGAA------------------------------------------ | 19 | 40 | 25 | 16 | 14 | 3 | 8 | 7 | 23 | 308 | 13 | |
| -----------------CAACACAACTTCATCAGTGA------------------------------------------- | 20 | - | 1 | 1 | - | - | - | - | 1 | 3 | - | |
| -------------------ACACAACTTCATCAGTGAATT---------------------------------------- | 21 | - | - | - | - | - | - | - | 1 | 1 | - | |
| --------------CAGCAACACAACTTCATCAGTGA------------------------------------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------CAACACAACTTCATCAGTGAATTT--------------------------------------- | 24 | - | 1 | - | - | - | - | - | - | - | - | |
| -------------------ACACAACTTCATCAGTGAATTTC-------------------------------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| --------------------CACAACTTCATCAGTGAATTTC-------------------------------------- | 22 | - | - | - | - | - | - | - | - | 1 | - | |
| -------------------ACACAACTTCATCAGTGAAT----------------------------------------- | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| --------------------CACAACTTCATCAGTGAAT----------------------------------------- | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| rat | ttcttgaaggaaagcagcaACACAACTTCATCAGTGAAtttccccatttgaattggttcatcctttaatgcctctgggaa | |||||||||||
| ******************************************************************************** | ||||||||||||
| ------------------------------------------------------------------------------------------ | ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted | |||||||||||
| rat | .((((..(((((((....(((.(((.((((..((((........))))))))))))))....))))....)))..)))). | 0.500 -11.40 | ||||||||||
| rat | chromosome:1:52043884:52043963:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000048246|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
novel_lenNOK_cloningHIGH_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH (3 loci)
block845721 [novel_lenNOK_cloningHIGH_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.151 | no | no | 0.33/0.43 | 19/24/0.03 | 0.0 | 0.0 | 308 | 0 | 10 | 0 | 18 | -5 | 3arm_loop | 39 | nd | 0.37 | 4 | 471 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | ------------------------------------------CACAACU----------------------------- | 461 | novel | |||||||||
| seed | ----------------------------------------AACACAA------------------------------- | 7 | novel | |||||||||
| seed | -------------------------------------------ACAACUU---------------------------- | 2 | novel | |||||||||
| seed | -------------------------------------AGCAACA---------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------------------ACACAACTTCATCAGTGAA------------------ | 19 | 40 | 25 | 16 | 14 | 3 | 8 | 7 | 23 | 308 | 13 | |
| ---------------------------------------CAACACAACTTCATCAGTGA------------------- | 20 | - | 1 | 1 | - | - | - | - | 1 | 3 | - | |
| -----------------------------------------ACACAACTTCATCAGTGAATT---------------- | 21 | - | - | - | - | - | - | - | 1 | 1 | - | |
| ------------------------------------CAGCAACACAACTTCATCAGTGA------------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------CACAACTTCATCAGTGAAT----------------- | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| ---------------------------------------CAACACAACTTCATCAGTGAATTT--------------- | 24 | - | 1 | - | - | - | - | - | - | - | - | |
| ------------------------------------------CACAACTTCATCAGTGAATTTC-------------- | 22 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------ACACAACTTCATCAGTGAAT----------------- | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------ACACAACTTCATCAGTGAATTTC-------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| rat | tccacccccttgtaatgtttcattcttgaagtaaagcagcaACACAACTTCATCAGTGAAtttccccattggaattgg | |||||||||||
| ****************************************************************************** | ||||||||||||
| rat | .(((..((..((......((((((..((((((..............))))))..))))))......))..))...))) | 0.720 -13.24 | ||||||||||
| rat | chromosome:1:50788841:50788918:-1 | intergenic |
block963877 [novel_lenNOK_cloningHIGH_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.621 | no | no | 0.35/0.43 | 19/23/0.02 | 0.0 | 0.0 | 308 | 0 | 10 | 0 | 19 | -2 | 5arm_loop | 39 | nd | 0.53 | 4 | 466 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | --------------------CACAACU----------------------------------------------------- | 458 | novel | |||||||||
| seed | ------------------AACACAA------------------------------------------------------- | 6 | novel | |||||||||
| seed | ---------------AGCAACA---------------------------------------------------------- | 1 | novel | |||||||||
| seed | ---------------------ACAACUU---------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------------------ACACAACTTCATCAGTGAA------------------------------------------ | 19 | 40 | 25 | 16 | 14 | 3 | 8 | 7 | 23 | 308 | 13 | |
| -----------------CAACACAACTTCATCAGTGA------------------------------------------- | 20 | - | 1 | 1 | - | - | - | - | 1 | 3 | - | |
| --------------CAGCAACACAACTTCATCAGTGA------------------------------------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| -------------------ACACAACTTCATCAGTGAAT----------------------------------------- | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| --------------------CACAACTTCATCAGTGAAT----------------------------------------- | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| rat | ttcttgaaggaaagcagcaACACAACTTCATCAGTGAAtatccccattgtaattggttcatcctttaatgcctctgggaa | |||||||||||
| ******************************************************************************** | ||||||||||||
| ------------------------------------------------------------------------------------------ | ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted | |||||||||||
| rat | .((((..(((.............((((....(((((........))))).....))))............)))..)))). | 0.440 -11.61 | ||||||||||
| rat | chromosome:1:51999487:51999566:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000048246|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
block965372 [novel_lenNOK_cloningHIGH_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.645 | no | no | 0.33/0.43 | 19/24/0.03 | 0.0 | 0.0 | 308 | 0 | 10 | 0 | 19 | -2 | 5arm_loop | 39 | nd | 0.53 | 4 | 471 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | --------------------CACAACU----------------------------------------------------- | 461 | novel | |||||||||
| seed | ------------------AACACAA------------------------------------------------------- | 7 | novel | |||||||||
| seed | ---------------------ACAACUU---------------------------------------------------- | 2 | novel | |||||||||
| seed | ---------------AGCAACA---------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------------------ACACAACTTCATCAGTGAA------------------------------------------ | 19 | 40 | 25 | 16 | 14 | 3 | 8 | 7 | 23 | 308 | 13 | |
| -----------------CAACACAACTTCATCAGTGA------------------------------------------- | 20 | - | 1 | 1 | - | - | - | - | 1 | 3 | - | |
| -------------------ACACAACTTCATCAGTGAATT---------------------------------------- | 21 | - | - | - | - | - | - | - | 1 | 1 | - | |
| --------------CAGCAACACAACTTCATCAGTGA------------------------------------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------CAACACAACTTCATCAGTGAATTT--------------------------------------- | 24 | - | 1 | - | - | - | - | - | - | - | - | |
| -------------------ACACAACTTCATCAGTGAATTTC-------------------------------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| --------------------CACAACTTCATCAGTGAATTTC-------------------------------------- | 22 | - | - | - | - | - | - | - | - | 1 | - | |
| -------------------ACACAACTTCATCAGTGAAT----------------------------------------- | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| --------------------CACAACTTCATCAGTGAAT----------------------------------------- | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| rat | ttcttgaaggaaagcagcaACACAACTTCATCAGTGAAtttccccattgtaattggttcatcctttaatgcctctgggaa | |||||||||||
| ******************************************************************************** | ||||||||||||
| ------------------------------------------------------------------------------------------ | ENSRNOT00000059908 ENSRNOG00000030267 RGD1561185_predicted | |||||||||||
| rat | .((((..(((.............((((....(((((........))))).....))))............)))..)))). | 0.410 -11.61 | ||||||||||
| rat | chromosome:1:52816245:52816324:1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000059908|ENSRNOG00000030267 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000059909|ENSRNOG00000030267 ## ENSRNOG00000030267|protein_coding|RGD1561185_predicted| |
novel_lenNOK_cloningHIGH_multiarm_DicerNOK_shortStem_5varHIGH (3 loci)
sblock10132 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.738 | no | no | 0.33/0.53 | 18/26/0.33 | 4.9 4.9 3.0 0.0 | 4.0 4.1 3.0 0.0 | 40 7 3 1 | 0 0 0 0 | 9 4 1 1 | 0 0 0 0 | 0 22 15 0 | 20 -5 -2 21 | 5arm 5arm_loop 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.63 0.25 0.20 0.61 | 10 1 2 7 | 79 | 9 | 0 | 0 |
| reads | miRBase family seed | ||||||||||
| seed | ------GUCUUCC----------------------------------------------------------------------------------- | 18 | novel | ||||||||
| seed | -CUUCUGU---------------------------------------------------------------------------------------- | 16 | novel | ||||||||
| seed | -----------CCAGUUG------------------------------------------------------------------------------ | 14 | novel | ||||||||
| seed | ---------UUCCAGU-------------------------------------------------------------------------------- | 8 | novel | ||||||||
| seed | ----------UCCAGUU------------------------------------------------------------------------------- | 5 | miR-145 | ||||||||
| seed | ---UCUGUCU-------------------------------------------------------------------------------------- | 3 | novel | ||||||||
| seed | --------------------------------CCUUAAG--------------------------------------------------------- | 3 | novel | ||||||||
| seed | -----------------GUAAAUC------------------------------------------------------------------------ | 2 | novel | ||||||||
| seed | -----------------------CCCAUCC------------------------------------------------------------------ | 2 | novel | ||||||||
| seed | ----CUGUCUU------------------------------------------------------------------------------------- | 2 | novel | ||||||||
| seed | ------------------------------------------------------------------------------CACUGCC----------- | 1 | miR-324 | ||||||||
| seed | -------------------------------------------------------------AACAGGC---------------------------- | 1 | novel | ||||||||
| seed | ----------------------------------------------------------AAGAACA------------------------------- | 1 | novel | ||||||||
| seed | -------------------------CAUCCAU---------------------------------------------------------------- | 1 | novel | ||||||||
| seed | ----------------------------CCAUCCU------------------------------------------------------------- | 1 | novel | ||||||||
| seed | -------------------------------------------------------CAGAAGA---------------------------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| TCTTCTGTCTTCCAGTTGT----------------------------------------------------------------------------- | 19 | - | 1 | 2 | - | - | - | 1 | 8 | 3 | |
| ----------TCCAGTTGTAAATCCCATC------------------------------------------------------------------- | 19 | - | - | - | - | 1 | - | - | 10 | 1 | |
| -----TGTCTTCCAGTTGTAAATCCCA--------------------------------------------------------------------- | 22 | 1 | - | 1 | 1 | - | - | - | 6 | 1 | |
| --------CTTCCAGTTGTAAATCCCA--------------------------------------------------------------------- | 19 | - | 1 | - | - | - | - | - | 6 | - | |
| -----TGTCTTCCAGTTGTAAATCCCATCC------------------------------------------------------------------ | 25 | 1 | - | - | - | - | - | - | 4 | - | |
| --TTCTGTCTTCCAGTTGTAA--------------------------------------------------------------------------- | 19 | - | - | - | - | - | - | - | 3 | - | |
| ---------TTCCAGTTGTAAATCCCATC------------------------------------------------------------------- | 20 | 1 | - | 1 | - | - | - | 1 | - | - | |
| ----------TCCAGTTGTAAATCCCATCCATCC-------------------------------------------------------------- | 24 | 1 | - | - | - | - | - | - | 1 | - | |
| ---------TTCCAGTTGTAAATCCCATCCATCC-------------------------------------------------------------- | 25 | - | - | - | - | - | - | - | 2 | - | |
| ---TCTGTCTTCCAGTTGTAAA-------------------------------------------------------------------------- | 19 | - | - | - | 1 | - | - | - | 1 | - | |
| -------------------------------TCCTTAAGACTTGGCTTCTCCGTG----------------------------------------- | 24 | - | - | - | - | - | - | 1 | 1 | - | |
| ----------------------TCCCATCCATCCTTAAGACTTGG--------------------------------------------------- | 23 | - | - | - | - | - | - | - | 2 | - | |
| ------------------------------------------------------GCAGAAGAACAGGCTCAAGA---------------------- | 20 | - | - | - | - | - | - | - | 1 | - | |
| ---------------------------------------------------------GAAGAACAGGCTCAAGATG-------------------- | 19 | - | - | - | - | - | - | - | 1 | - | |
| ---------------------------TCCATCCTTAAGACTTGGCT------------------------------------------------- | 20 | - | - | - | - | - | - | - | 1 | - | |
| -----TGTCTTCCAGTTGTAAATCCCATC------------------------------------------------------------------- | 24 | - | - | - | - | - | - | - | 1 | - | |
| ----------------TGTAAATCCCATCCATCC-------------------------------------------------------------- | 18 | - | - | - | - | - | - | 1 | - | - | |
| ----------------TGTAAATCCCATCCATCCT------------------------------------------------------------- | 19 | - | - | - | - | - | 1 | - | - | - | |
| ------------------------------------------------------------GAACAGGCTCAAGATGCTCAC--------------- | 21 | - | - | - | - | - | - | - | 1 | - | |
| -----TGTCTTCCAGTTGTAAATC------------------------------------------------------------------------ | 19 | - | - | - | - | - | - | - | 1 | - | |
| --------CTTCCAGTTGTAAATCCCATCC------------------------------------------------------------------ | 22 | - | - | - | - | - | - | - | 1 | - | |
| -----TGTCTTCCAGTTGTAAAT------------------------------------------------------------------------- | 18 | 1 | - | - | - | - | - | - | - | - | |
| TCTTCTGTCTTCCAGTTGTAAATCCC---------------------------------------------------------------------- | 26 | - | - | - | - | - | - | - | 1 | - | |
| ------------------------CCATCCATCCTTAAGACTTG---------------------------------------------------- | 20 | - | - | - | - | 1 | - | - | - | - | |
| -----------------------------------------------------------------------------TCACTGCCACATGTGGACA | 19 | - | - | - | - | - | - | - | 1 | - | |
| -------------------------------TCCTTAAGACTTGGCTTCTC--------------------------------------------- | 20 | - | - | - | 1 | - | - | - | - | - | |
| rat | TCTTCTGTCTTCCAGTTGTAAATCCCATCCatccttaagacttggcttctccgtgcagaagaacaggctcaagatgctcactgccacatgtggaca | ||||||||||
| ************************************************************************************************ | |||||||||||
| rat | ..........((((..(((..........(((.(((.((.((((.(((((......)))))..)))))).)))))).........)))..)))).. | 0.480 -16.01 | |||||||||
| rat | chromosome:6:122574813:122574908:-1 | intergenic |
sblock1980 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.703 | no | no | 0.40/0.58 | 18/25/0.57 | 1.2 0.0 8.0 4.1 1.7 | 2.7 0.0 8.6 4.9 2.7 | 73 1 7 7 3 | 0 0 0 0 0 | 9 1 1 1 2 | 0 0 0 0 0 | 3 25 22 11 1 | 9 -6 -18 11 26 | 5arm 5arm_loop_3arm 3arm 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.22 0.32 0.33 0.28 0.39 | 3 5 4 3 7 | 122 | 9 | -7 | -10 |
| reads | miRBase family seed | ||||||||||
| seed | -------CCAUGUC--------------------------------------------------------------------------------- | 56 | novel | ||||||||
| seed | ----CCUCCAU------------------------------------------------------------------------------------ | 42 | novel | ||||||||
| seed | -------------------------------------------------------GCUUAGC--------------------------------- | 3 | novel | ||||||||
| seed | ---------------------------------------------------------------GGAUUCU------------------------- | 3 | novel | ||||||||
| seed | --------CAUGUCU-------------------------------------------------------------------------------- | 3 | novel | ||||||||
| seed | -----------GUCUCAU----------------------------------------------------------------------------- | 2 | novel | ||||||||
| seed | ---------------------------------------------------CACUGCU------------------------------------- | 2 | novel | ||||||||
| seed | ------------------------------------AGUGUCU---------------------------------------------------- | 2 | novel | ||||||||
| seed | ----------------------------------------------------------------------GAGGGAG------------------ | 2 | novel | ||||||||
| seed | -------------------------------------------UUAAGGC--------------------------------------------- | 1 | novel | ||||||||
| seed | --------------------------------------------------UCACUGC-------------------------------------- | 1 | novel | ||||||||
| seed | ----------------------------------------------------------UAGCUGG------------------------------ | 1 | novel | ||||||||
| seed | ---------------------------------------------------------------------------AGACGAG------------- | 1 | novel | ||||||||
| seed | -----------------------------------------CUUUAAG----------------------------------------------- | 1 | novel | ||||||||
| seed | --------------UCAUCGC-------------------------------------------------------------------------- | 1 | novel | ||||||||
| seed | --------------------------GAGCGGC-------------------------------------------------------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------TCCATGTCTCATCGCATCTTGAG------------------------------------------------------------------ | 23 | 1 | 2 | - | 1 | - | 1 | 1 | 45 | - | |
| ---TCCTCCATGTCTCATCGCA------------------------------------------------------------------------- | 19 | 1 | 1 | 3 | - | 1 | 1 | 3 | 28 | 2 | |
| -------CCATGTCTCATCGCATCTTGAG------------------------------------------------------------------ | 22 | - | - | - | - | - | - | - | 3 | - | |
| ------TCCATGTCTCATCGCATCT---------------------------------------------------------------------- | 19 | - | - | - | - | - | - | - | 2 | - | |
| ------TCCATGTCTCATCGCATCTTG-------------------------------------------------------------------- | 21 | - | - | - | - | - | - | 1 | 1 | - | |
| --------------------------------------------------TCACTGCTTAGCTGGATTC-------------------------- | 19 | - | - | - | - | - | - | - | 2 | - | |
| --------------------------------------------------------------TGGATTCTGAGGGAGACGAGAA----------- | 22 | - | - | - | - | - | - | - | 2 | - | |
| -----------------------------------TAGTGTCTTTAAGGCTCACTG--------------------------------------- | 21 | - | - | - | - | - | - | - | 2 | - | |
| ----------TGTCTCATCGCATCTTGAG------------------------------------------------------------------ | 19 | - | - | - | - | - | - | - | 2 | - | |
| ------------------------------------------------------TGCTTAGCTGGATTCTGAG---------------------- | 19 | - | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------TGCTTAGCTGGATTCTGAGGGAGAC---------------- | 25 | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------------------------------------GAGACGAGAATTTGTGAGTT- | 20 | - | - | - | - | - | - | - | 1 | - | |
| ---TCCTCCATGTCTCATCGCATC----------------------------------------------------------------------- | 21 | - | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------TGCTTAGCTGGATTCTGA----------------------- | 18 | - | - | - | - | - | - | - | 1 | - | |
| -------------------------TGAGCGGCCATAGTGTCTT--------------------------------------------------- | 19 | - | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------------CTCACTGCTTAGCTGGATTCTGAG---------------------- | 24 | - | - | - | - | - | - | - | 1 | - | |
| -------------CTCATCGCATCTTGAGCGG--------------------------------------------------------------- | 19 | - | - | - | - | - | - | - | - | 1 | |
| ---------------------------------------------------------------------TGAGGGAGACGAGAATTTGTGAG--- | 23 | - | - | - | - | - | - | - | 1 | - | |
| ---------------------------------------------------------TTAGCTGGATTCTGAGGGAGAC---------------- | 22 | - | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------TTTAAGGCTCACTGCTTAGCTGGA----------------------------- | 24 | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------------------------TGGATTCTGAGGGAGACGAGA------------ | 21 | - | - | - | - | - | - | - | 1 | - | |
| ------TCCATGTCTCATCGCATC----------------------------------------------------------------------- | 18 | 1 | - | - | - | - | - | - | - | - | |
| ----------------------------------------TCTTTAAGGCTCACTGCTTAGCT-------------------------------- | 23 | - | - | - | - | - | - | - | 1 | - | |
| ---TCCTCCATGTCTCATCGC-------------------------------------------------------------------------- | 18 | - | - | - | - | - | - | 1 | - | - | |
| ---------------------------------------------------------------------TGAGGGAGACGAGAATTTGT------ | 20 | 1 | - | - | - | - | - | - | - | - | |
| rat | agcTCCTCCATGTCTCATCGCATCTTGAGcggccatagtgtctttaaggctcactgcttagctggattctgagggagacgagaatttgtgagttg | ||||||||||
| *********************************************************************************************** | |||||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000016427 ENSRNOG00000012031 St8sia2 | ||||||||||
| rat | ((((((((...(((((.(((.(((((((((((((.(((.....))).))))....)))))...))))..)))..)))))))).......))))). | 0.440 -23.01 | |||||||||
| rat | chromosome:1:129035418:129035512:1 | Same_strand|Intronic_coding|ENSRNOT00000016427|ENSRNOG00000012031 ## ENSRNOG00000012031|protein_coding|St8sia2|Alpha-2,8-sialyltransferase 8B (EC 2.4.99.-) (ST8Sia II) (Sialyltransferase X) (STX). [Source:UniProtKB/Swiss-Prot;Acc:Q07977] |
sblock6794 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.099 | no | no | 0.30/0.58 | 18/26/0.38 | 2.7 3.4 0.0 0.0 0.5 | 4.9 2.1 1.0 0.0 0.0 | 35 8 2 1 2 | 0 0 0 0 0 | 3 3 1 1 1 | 0 0 0 0 0 | 0 21 47 26 14 | 15 -1 -18 1 11 | 5arm 5arm 5arm_loop_3arm 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.15 0.41 0.47 0.21 0.19 | 3 4 6 3 2 | 64 | 3 | -15 | -24 |
| reads | miRBase family seed | ||||
| seed | ---GAACUUU-------------------------------------------------------------------------------------------- | 26 | novel | ||
| seed | ----------GGAGAAU------------------------------------------------------------------------------------- | 11 | novel | ||
| seed | ---------UGGAGAA-------------------------------------------------------------------------------------- | 5 | novel | ||
| seed | -CUGAACU---------------------------------------------------------------------------------------------- | 5 | novel | ||
| seed | -------------------------------GCACUUU---------------------------------------------------------------- | 3 | novel | ||
| seed | ----------------------------AAUGCAC------------------------------------------------------------------- | 3 | novel | ||
| seed | ----AACUUUG------------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | ----------------------ACCCUUA------------------------------------------------------------------------- | 2 | novel | ||
| seed | ------------------------------------------------GGAUUAA----------------------------------------------- | 2 | novel | ||
| seed | --UGAACUU--------------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | --------------------------------------------------------------------UAUUGAG--------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------------GCCCGGA------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------------------------AUUGAGG-------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| --TGAACTTTGGAGAATTGAA--------------------------------------------------------------------------------- | 19 | 1 | 1 | 9 | |
| ---------TGGAGAATTGAATACCCTT-------------------------------------------------------------------------- | 19 | - | - | 7 | |
| --TGAACTTTGGAGAATTGAATACCC---------------------------------------------------------------------------- | 24 | 2 | - | 5 | |
| --TGAACTTTGGAGAATTGAATACCCTT-------------------------------------------------------------------------- | 26 | 1 | - | 5 | |
| ------------------------------TGCACTTTGAGAGGGCCTG----------------------------------------------------- | 19 | 2 | - | 1 | |
| --------TTGGAGAATTGAATACCCT--------------------------------------------------------------------------- | 19 | - | - | 3 | |
| ---------TGGAGAATTGAATACCCTTAATGCAC------------------------------------------------------------------- | 26 | - | - | 3 | |
| TCTGAACTTTGGAGAATTGA---------------------------------------------------------------------------------- | 20 | - | - | 3 | |
| -CTGAACTTTGGAGAATTG----------------------------------------------------------------------------------- | 18 | - | - | 2 | |
| --TGAACTTTGGAGAATTGAATACC----------------------------------------------------------------------------- | 23 | 1 | - | 1 | |
| ---GAACTTTGGAGAATTGAATACCCTT-------------------------------------------------------------------------- | 25 | 2 | - | - | |
| ---------------------------TAATGCACTTTGAGAGGGCCTG----------------------------------------------------- | 22 | - | - | 1 | |
| TCTGAACTTTGGAGAATTGAA--------------------------------------------------------------------------------- | 21 | - | - | 1 | |
| ---------------------------------------------------------TGCCCGGAAATTATTGAGG-------------------------- | 19 | - | - | 1 | |
| --------------------------------------------------------------------TATTGAGGGCTTTCGGCTCC-------------- | 20 | - | - | 1 | |
| --------TTGGAGAATTGAATACCCTTAA------------------------------------------------------------------------ | 22 | - | 1 | - | |
| ---------------------------TAATGCACTTTGAGAGGGCC------------------------------------------------------- | 20 | - | 1 | - | |
| ---------------------TACCCTTAATGCACTTTGAGAG----------------------------------------------------------- | 22 | - | - | 1 | |
| -------------------------------------------------------------------TTATTGAGGGCTTTCGGCTCC-------------- | 21 | - | - | 1 | |
| ---------------------TACCCTTAATGCACTTTGAGA------------------------------------------------------------ | 21 | - | - | 1 | |
| -----------------------------------------------TGGATTAAACTGCCCGGAAAT---------------------------------- | 21 | - | - | 1 | |
| ---------TGGAGAATTGAATACCCTTAATG---------------------------------------------------------------------- | 23 | - | - | 1 | |
| TCTGAACTTTGGAGAATTGAATACCC---------------------------------------------------------------------------- | 26 | - | - | 1 | |
| --------TTGGAGAATTGAATACCCTTAAT----------------------------------------------------------------------- | 23 | - | - | 1 | |
| ---------------------------TAATGCACTTTGAGAGGGCCTGGA--------------------------------------------------- | 24 | - | - | 1 | |
| -----------------------------------------------TGGATTAAACTGCCCGGAA------------------------------------ | 19 | - | - | 1 | |
| rat | TCTGAACTTTGGAGAATTGAATACCCTTAATGCACtttgagagggcctggattaaactgcccggaaattattgagggctttcggctccggtggaagtctcag | ||||
| ****************************************************************************************************** | |||||
| rat | .(((((((((((((...((((..(((((((((....((....((((..((......))))))...)).)))))))))..)))).))))....))))).)))) | 0.860 -29.80 | |||
| rat | chromosome:20:5532680:5532781:-1 | intergenic |
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