other hairpins
novel_lenNOK_cloningHIGH_multiarm_DicerNOK_shortStem_5varHIGH (3 loci)
novel_lenNOK_cloningOK_5varHIGH_mirtron (3 loci)
block2150494 [novel_lenNOK_cloningOK_5varHIGH_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.013 | no | no | 0.59/0.64 | 19/23/0.57 | 2.1 | 1.1 | 14 | 0 | 5 | 0 | 18 | 0 | 5arm | 2 | 0 | 0.21 | 2 | 14 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -------------------GACCAGC------------------------------------------------------------------- | 10 | novel | ||||
| seed | ----------------------CAGCCUG---------------------------------------------------------------- | 4 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S2 | T4S1 | T4S2 | |||
| ------------------TGACCAGCCTGTCTCCCCATC------------------------------------------------------ | 21 | 1 | 2 | - | - | - | |
| ---------------------CCAGCCTGTCTCCCCATCA----------------------------------------------------- | 19 | 3 | - | - | - | - | |
| ------------------TGACCAGCCTGTCTCCCCATCA----------------------------------------------------- | 22 | - | 1 | 1 | - | 1 | |
| ------------------TGACCAGCCTGTCTCCCCA-------------------------------------------------------- | 19 | 1 | - | 1 | 1 | - | |
| ------------------TGACCAGCCTGTCTCCCCATCAG---------------------------------------------------- | 23 | - | 1 | - | - | - | |
| ---------------------CCAGCCTGTCTCCCCATCAGTC-------------------------------------------------- | 22 | 1 | - | - | - | - | |
| rat | caggtctgggacttgcccTGACCAGCCTGTCTCCCCATCAGTCaccagatttcgtggaggagctgaggactttggacccatctcccagtcctg | ||||||
| ********************************************************************************************* | |||||||
| ++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++ | ENSRNOT00000045280 ENSRNOG00000032574 RGD1565055_predicted | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++ | ENSRNOT00000052080 ENSRNOG00000032574 RGD1565055_predicted | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++ | ENSRNOT00000047338 ENSRNOG00000032574 RGD1565055_predicted | ||||||
| rat | ((((.((((((..((..((((..(((((..((((((((.((((....))))..)))).))))...))).))))))...))..)))))).)))) | 0.870 -34.20 | |||||
| rat | chromosome:7:114078201:114078293:-1 | Same_strand|Boundary_coding|ENSRNOT00000052080|ENSRNOG00000032574 ## ENSRNOG00000032574|protein_coding|RGD1565055_predicted| |
block2400619 [novel_lenNOK_cloningOK_5varHIGH_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.337 | no | no | 0.61/0.68 | 19/23/0.68 | 1.5 | 2.4 | 14 | 0 | 6 | 0 | 17 | 3 | 3arm | 1 | 0 | 0.24 | 2 | 22 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | -----------------------------------------------------------------------------CGACCUC------------------------------ | 9 | novel | |||||
| seed | --------------------------------------------------------------------------AGCCGAC--------------------------------- | 5 | novel | |||||
| seed | -------------------------------------------------------------------------UAGCCGA---------------------------------- | 5 | novel | |||||
| seed | ---------------------------------------------------------------------------GCCGACC-------------------------------- | 1 | novel | |||||
| seed | ----------------------------------------------------------------------UCCUAGC------------------------------------- | 1 | novel | |||||
| seed | ------------------------------------------------------------------------CUAGCCG----------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T4S1 | T5S1 | |||
| -------------------------------------------------------------------------TAGCCGACCTCTTCCCACC---------------------- | 19 | 5 | - | - | - | - | - | |
| ----------------------------------------------------------------------------CCGACCTCTTCCCACCTCCAG----------------- | 21 | 1 | 2 | 1 | - | - | - | |
| ------------------------------------------------------------------------CTAGCCGACCTCTTCCCACCTCC------------------- | 23 | - | 3 | - | - | - | - | |
| ----------------------------------------------------------------------------CCGACCTCTTCCCACCTCC------------------- | 19 | - | - | - | - | 2 | - | |
| ----------------------------------------------------------------------------CCGACCTCTTCCCACCTCCA------------------ | 20 | - | 2 | - | - | - | - | |
| -----------------------------------------------------------------------CCTAGCCGACCTCTTCCCACC---------------------- | 21 | - | - | - | - | - | 1 | |
| --------------------------------------------------------------------------AGCCGACCTCTTCCCACCTCC------------------- | 21 | - | 1 | - | - | - | - | |
| ----------------------------------------------------------------------------CCGACCTCTTCCCACCTCCAGG---------------- | 22 | 1 | - | - | - | - | - | |
| ------------------------------------------------------------------------CTAGCCGACCTCTTCCCACC---------------------- | 20 | - | 1 | - | - | - | - | |
| ------------------------------------------------------------------------CTAGCCGACCTCTTCCCACCTC-------------------- | 22 | - | - | 1 | - | - | - | |
| ---------------------------------------------------------------------TTCCTAGCCGACCTCTTCCCACC---------------------- | 23 | - | - | - | 1 | - | - | |
| rat | ctctgtcctggcagcgggttaatgatggtggtggtgcagtggggggaggccagcaggagcagagcccaattcCTAGCCGACCTCTTCCCACCTCCAGgctcgtcaaaggaggag | |||||||
| ****************************************************************************************************************** | ||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000015810 ENSRNOG00000011361 Slc37a4 | |||||||
| rat | ((((.((((....(((((((.....(((.(((((......(((((..(((....(((((..........))))).)))..)))))..))))).))))))))))...)))))))) | 0.790 -42.40 | ||||||
| rat | chromosome:8:47367423:47367536:1 | Same_strand|Boundary_coding|ENSRNOT00000015810|ENSRNOG00000011361 ## ENSRNOG00000011361|protein_coding|Slc37a4|solute carrier family 37 (glucose-6-phosphate transporter), member 4 [Source:RefSeq_peptide;Acc:NP_113777] |
block2463131 [novel_lenNOK_cloningOK_5varHIGH_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.270 | no | no | 0.68/0.77 | 18/22/0.57 | 1.3 | 2.4 | 21 | 0 | 5 | 0 | 17 | 6 | 3arm | 1 | 1 | 0.22 | 1 | 21 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | --------------------------------------------------------GACCCUC------------------------------- | 12 | novel | ||||
| seed | ------------------------------------------------------CUGACCC--------------------------------- | 7 | novel | ||||
| seed | -----------------------------------------------------CCUGACC---------------------------------- | 1 | novel | ||||
| seed | ---------------------------------------------------------ACCCUCC------------------------------ | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T4S1 | T4S2 | T5S1 | |||
| -------------------------------------------------------TGACCCTCCGCCTCTCCCC-------------------- | 19 | 2 | 1 | 1 | - | - | |
| -----------------------------------------------------CCTGACCCTCCGCCTCTCC---------------------- | 19 | 2 | 1 | - | - | 1 | |
| -------------------------------------------------------TGACCCTCCGCCTCTCCCCG------------------- | 20 | 1 | 1 | - | 1 | - | |
| -------------------------------------------------------TGACCCTCCGCCTCTCCCCGAA----------------- | 22 | 2 | - | 1 | - | - | |
| -----------------------------------------------------CCTGACCCTCCGCCTCTCCCC-------------------- | 21 | 1 | 2 | - | - | - | |
| -------------------------------------------------------TGACCCTCCGCCTCTCCCCGA------------------ | 21 | - | - | - | 1 | - | |
| --------------------------------------------------------GACCCTCCGCCTCTCCCCGAA----------------- | 21 | - | 1 | - | - | - | |
| -------------------------------------------------------TGACCCTCCGCCTCTCCC--------------------- | 18 | - | - | - | - | 1 | |
| ----------------------------------------------------GCCTGACCCTCCGCCTCTCCCC-------------------- | 22 | 1 | - | - | - | - | |
| rat | ttctgcctctcaggcgggagggctggtgggtgtgctcactggcgctgtgcggGCCTGACCCTCCGCCTCTCCCCGAAgcttcgagagctggagg | ||||||
| ********************************************************************************************** | |||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000026106 ENSRNOG00000019262 RGD1307844_predicted | ||||||
| rat | ((((..(((((((((((((((((.((.((((..((((((.......)))..)))...)))).))))).)))))....)))).)))))..)))). | 0.540 -41.80 | |||||
| rat | chromosome:8:126455406:126455499:1 | Same_strand|Boundary_non-coding|ENSRNOT00000055870|ENSRNOG00000019262 ## Same_strand|Intronic_coding|ENSRNOT00000026106|ENSRNOG00000019262 ## ENSRNOG00000019262|protein_coding|RGD1307844_predicted| |
novel_lenNOK_cloningOK_Multihit_5varHIGH_loopOverlap (3 loci)
block133088 [novel_lenNOK_cloningOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.311 | no | no | 0.50/0.68 | 19/25/0.62 | 0.0 2.2 | 0.0 1.3 | 4 6 | 0 0 | 3 3 | 0 0 | 23 5 | -2 6 | 3arm_loop 3arm | 49 54 | nd nd | 0.30 0.26 | 4 3 | 13 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ------------------------------------------------------CCGUUGU----------------------------------- | 4 | novel | ||||
| seed | ------------------------------------------------------------------UGACAUG----------------------- | 3 | novel | ||||
| seed | -------------------------------------------------------CGUUGUG---------------------------------- | 2 | novel | ||||
| seed | --------------------------------------------------------------GAUCUGA--------------------------- | 1 | novel | ||||
| seed | ----------------------------------------------------------------UCUGACA------------------------- | 1 | novel | ||||
| seed | -----------------------------------------------------UCCGUUG------------------------------------ | 1 | novel | ||||
| seed | -------------------------------------------------------------------------CCGCCUG---------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S2 | T3S1 | T4S1 | T5S1 | |||
| -----------------------------------------------------TCCGTTGTGGATCTGACATG----------------------- | 20 | - | - | 4 | - | - | |
| ------------------------------------------------------CCGTTGTGGATCTGACATG----------------------- | 19 | 1 | 1 | - | - | - | |
| -----------------------------------------------------------------CTGACATGCCGCCTGGAGAAACC-------- | 23 | - | 2 | - | - | - | |
| -------------------------------------------------------------GGATCTGACATGCCGCCTGGAGAA----------- | 24 | - | 1 | - | - | - | |
| ------------------------------------------------------------------------GCCGCCTGGAGAAACCTGC----- | 19 | - | - | - | - | 1 | |
| ---------------------------------------------------------------ATCTGACATGCCGCCTGGAGAAACC-------- | 25 | - | - | - | 1 | - | |
| -----------------------------------------------------------------CTGACATGCCGCCTGGAGAAACCTG------ | 25 | - | 1 | - | - | - | |
| ----------------------------------------------------ATCCGTTGTGGATCTGACATGCC--------------------- | 23 | - | - | 1 | - | - | |
| rat | agctgaacaggaagctcactggcatggccttccgtgttcctacccccaatgtaTCCGTTGTGGATCTGACATGCCGCCTGGAGAAACCtgccaagt | ||||||
| ************************************************************************************************ | |||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000058917 ENSRNOG00000038610 Q8K4T8_RAT | ||||||
| rat | .(((...((((...(((...(((..(((.....(((((.....((.(((((....))))).))....)))))))))))..)))...))))...))) | 0.670 -26.90 | |||||
| rat | chromosome:11:70680128:70680223:-1 | Same_strand|Intronic_non-coding|ENSRNOT00000058917|ENSRNOG00000038610 ## ENSRNOG00000038610|protein_coding|Q8K4T8_RAT|Glyceraldehyde-3-phosphate-dehydrogenase (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q8K4T8] |
block1865178 [novel_lenNOK_cloningOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.594 | no | no | 0.50/0.68 | 19/25/0.62 | 0.0 2.2 | 0.0 1.3 | 4 6 | 0 0 | 3 3 | 0 0 | 23 5 | -2 6 | 3arm_loop 3arm | 49 54 | nd nd | 0.30 0.26 | 4 3 | 13 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ------------------------------------------------------CCGUUGU----------------------------------- | 4 | novel | ||||
| seed | ------------------------------------------------------------------UGACAUG----------------------- | 3 | novel | ||||
| seed | -------------------------------------------------------CGUUGUG---------------------------------- | 2 | novel | ||||
| seed | --------------------------------------------------------------GAUCUGA--------------------------- | 1 | novel | ||||
| seed | ----------------------------------------------------------------UCUGACA------------------------- | 1 | novel | ||||
| seed | -----------------------------------------------------UCCGUUG------------------------------------ | 1 | novel | ||||
| seed | -------------------------------------------------------------------------CCGCCUG---------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S2 | T3S1 | T4S1 | T5S1 | |||
| -----------------------------------------------------TCCGTTGTGGATCTGACATG----------------------- | 20 | - | - | 4 | - | - | |
| ------------------------------------------------------CCGTTGTGGATCTGACATG----------------------- | 19 | 1 | 1 | - | - | - | |
| -----------------------------------------------------------------CTGACATGCCGCCTGGAGAAACC-------- | 23 | - | 2 | - | - | - | |
| -------------------------------------------------------------GGATCTGACATGCCGCCTGGAGAA----------- | 24 | - | 1 | - | - | - | |
| ------------------------------------------------------------------------GCCGCCTGGAGAAACCTGC----- | 19 | - | - | - | - | 1 | |
| ---------------------------------------------------------------ATCTGACATGCCGCCTGGAGAAACC-------- | 25 | - | - | - | 1 | - | |
| -----------------------------------------------------------------CTGACATGCCGCCTGGAGAAACCTG------ | 25 | - | 1 | - | - | - | |
| ----------------------------------------------------ATCCGTTGTGGATCTGACATGCC--------------------- | 23 | - | - | 1 | - | - | |
| rat | agctgaacgggaagctcactggcatggccttccgtgttcctacccccaatgtaTCCGTTGTGGATCTGACATGCCGCCTGGAGAAACCtgccaagt | ||||||
| ************************************************************************************************ | |||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000058004 ENSRNOG00000038118 Q8K4T8_RAT | ||||||
| rat | .(((...((((...(((...(((..(((.....(((((.....((.(((((....))))).))....)))))))))))..)))...))))...))) | 0.650 -26.20 | |||||
| rat | chromosome:5:117080936:117081031:1 | Same_strand|Intronic_coding|ENSRNOT00000058004|ENSRNOG00000038118 ## ENSRNOG00000038118|protein_coding|Q8K4T8_RAT|Glyceraldehyde-3-phosphate-dehydrogenase (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q8K4T8] |
block2398241 [novel_lenNOK_cloningOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.594 | no | no | 0.50/0.68 | 19/25/0.62 | 0.0 2.2 | 0.0 1.3 | 4 6 | 0 0 | 3 3 | 0 0 | 23 5 | -2 6 | 3arm_loop 3arm | 49 54 | nd nd | 0.30 0.26 | 4 3 | 13 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ------------------------------------------------------CCGUUGU----------------------------------- | 4 | novel | ||||
| seed | ------------------------------------------------------------------UGACAUG----------------------- | 3 | novel | ||||
| seed | -------------------------------------------------------CGUUGUG---------------------------------- | 2 | novel | ||||
| seed | --------------------------------------------------------------GAUCUGA--------------------------- | 1 | novel | ||||
| seed | ----------------------------------------------------------------UCUGACA------------------------- | 1 | novel | ||||
| seed | -----------------------------------------------------UCCGUUG------------------------------------ | 1 | novel | ||||
| seed | -------------------------------------------------------------------------CCGCCUG---------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S2 | T3S1 | T4S1 | T5S1 | |||
| -----------------------------------------------------TCCGTTGTGGATCTGACATG----------------------- | 20 | - | - | 4 | - | - | |
| ------------------------------------------------------CCGTTGTGGATCTGACATG----------------------- | 19 | 1 | 1 | - | - | - | |
| -----------------------------------------------------------------CTGACATGCCGCCTGGAGAAACC-------- | 23 | - | 2 | - | - | - | |
| -------------------------------------------------------------GGATCTGACATGCCGCCTGGAGAA----------- | 24 | - | 1 | - | - | - | |
| ------------------------------------------------------------------------GCCGCCTGGAGAAACCTGC----- | 19 | - | - | - | - | 1 | |
| ---------------------------------------------------------------ATCTGACATGCCGCCTGGAGAAACC-------- | 25 | - | - | - | 1 | - | |
| -----------------------------------------------------------------CTGACATGCCGCCTGGAGAAACCTG------ | 25 | - | 1 | - | - | - | |
| ----------------------------------------------------ATCCGTTGTGGATCTGACATGCC--------------------- | 23 | - | - | 1 | - | - | |
| rat | agctgaacgggaagctcactggcatggccttccgtgttcctacccccaatgtaTCCGTTGTGGATCTGACATGCCGCCTGGAGAAACCtgccaagt | ||||||
| ************************************************************************************************ | |||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000046446 ENSRNOG00000033711 Q8K4T8_RAT | ||||||
| rat | .(((...((((...(((...(((..(((.....(((((.....((.(((((....))))).))....)))))))))))..)))...))))...))) | 0.650 -26.20 | |||||
| rat | chromosome:8:44322384:44322479:1 | Same_strand|Intronic_non-coding|ENSRNOT00000046446|ENSRNOG00000033711 ## ENSRNOG00000033711|protein_coding|Q8K4T8_RAT|Glyceraldehyde-3-phosphate-dehydrogenase (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q8K4T8] |
novel_lenNOK_cloningOK_loopOverlap_randfoldOK_bulgeHIGH (3 loci)
block18639 [novel_lenNOK_cloningOK_loopOverlap_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.42/0.44 | 18/19/0.00 | 0.0 | 0.0 | 43 | 0 | 7 | 0 | 40 | -3 | 5arm_loop | 1 | nd | 0.28 | 4 | 49 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | -----------------------------------------GGAACAC---------------------------------------------------------------------- | 49 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T5S1 | T5S2 | |||
| ----------------------------------------TGGAACACTGTGATTTGC------------------------------------------------------------ | 18 | 1 | 1 | 20 | 8 | 1 | 2 | 15 | |
| ----------------------------------------TGGAACACTGTGATTTGCA----------------------------------------------------------- | 19 | - | - | - | 1 | - | - | - | |
| rat | ttctgtaatactgagcatcatgtaatgtggatattggtgtTGGAACACTGTGATTTGCagggtcacagtgtttaccagtttcctattggattctttgcccttcttcatttatgcggga | ||||||||
| ********************************************************************************************************************** | |||||||||
| rat | (((((((....((((((..((.(((((.(((.((((((....(((((((((((((.....))))))))))))))))))).)))))))).))....)))......)))....))))))) | 0.940 -36.50 | |||||||
| rat | chromosome:10:41824041:41824158:-1 | intergenic |
block639003 [novel_lenNOK_cloningOK_loopOverlap_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.11/0.15 | 18/20/0.08 | 0.0 | 0.0 | 10 | 0 | 2 | 0 | 8 | -4 | 5arm_loop_3arm | 1 | nd | 0.28 | 5 | 13 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------AUUUUAC------------------------------------ | 12 | novel | |
| seed | ----------UUUUACA----------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| --------TATTTTACATTAACAAAT-------------------------- | 18 | 10 | 2 | |
| ---------ATTTTACATTAACAAATTGT----------------------- | 20 | - | 1 | |
| rat | taacaaatTATTTTACATTAACAAATtgttggtgtaaaattaatgttgttgc | |||
| **************************************************** | ||||
| rat | ((((((...(((((((((((((.....))))))))))))).....)))))). | 1.000 -15.80 | ||
| rat | chromosome:17:1919179:1919230:1 | intergenic |
block930824 [novel_lenNOK_cloningOK_loopOverlap_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.83/0.84 | 18/19/0.00 | 0.5 | 0.2 | 30 | 0 | 9 | 0 | 20 | -7 | 3arm_loop | 2 | nd | 0.28 | 4 | 40 | 9 | na | na |
| reads | miRBase family seed | ||||||||||
| seed | ------------------------------------------UCCCCUC------------------------------- | 21 | novel | ||||||||
| seed | -----------------------------------------CUCCCCU-------------------------------- | 11 | novel | ||||||||
| seed | -------------------------------------------CCCCUCU------------------------------ | 7 | novel | ||||||||
| seed | --------------------------------------------CCCUCUC----------------------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------------------CTCCCCTCTCCCCGCGGG--------------------- | 18 | 1 | - | 4 | 3 | 2 | 2 | 1 | 2 | 3 | |
| ----------------------------------------CCTCCCCTCTCCCCGCGGG--------------------- | 19 | - | 2 | 3 | 1 | - | - | - | 2 | - | |
| ------------------------------------------TCCCCTCTCCCCGCGGGG-------------------- | 18 | - | - | - | 2 | - | 1 | 3 | 1 | - | |
| ----------------------------------------CCTCCCCTCTCCCCGCGG---------------------- | 18 | - | - | - | 2 | - | - | 1 | - | - | |
| -----------------------------------------CTCCCCTCTCCCCGCGGGG-------------------- | 19 | 1 | - | 1 | 1 | - | - | - | - | - | |
| -------------------------------------------CCCCTCTCCCCGCGGGGA------------------- | 18 | 1 | - | - | - | - | - | - | - | - | |
| rat | tggtctgtacgtgcacagccttctctgggggcgatcaagtCCTCCCCTCTCCCCGCGGGGaggcagctatccgcagacct | ||||||||||
| ******************************************************************************** | |||||||||||
| ------------------------------------------------------------------------------------------ | ENSRNOT00000020568 ENSRNOG00000015220 Crtac1 | ||||||||||
| rat | .(((((((....((...((((((((((((((.((.............)))))))).)))))))).)).....))))))). | 0.480 -34.12 | |||||||||
| rat | chromosome:1:248452762:248452841:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000020568|ENSRNOG00000015220 ## ENSRNOG00000015220|protein_coding|Crtac1|Crtac1 protein (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q5EB82] |
novel_lenNOK_cloningOK_mirtron_nonpairedHIGH_bulgeHIGH (3 loci)
block82532 [novel_lenNOK_cloningOK_mirtron_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.595 | no | no | 0.57/0.64 | 18/22/0.39 | 0.1 | 1.1 | 31 | 0 | 9 | 0 | 5 | 21 | 5arm | 2 | 0 | 0.38 | 4 | 44 | 9 | na | na |
| reads | miRBase family seed | ||||||||||
| seed | -------CUCCACU----------------------------------------------------------------------------------------------- | 35 | novel | ||||||||
| seed | ------GCUCCAC------------------------------------------------------------------------------------------------ | 8 | novel | ||||||||
| seed | --------UCCACUG---------------------------------------------------------------------------------------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------GCTCCACTGTTGTCCCCAC------------------------------------------------------------------------------------ | 19 | 1 | - | 2 | - | - | 3 | 4 | 2 | - | |
| ------GCTCCACTGTTGTCCCCA------------------------------------------------------------------------------------- | 18 | - | - | 1 | - | - | - | - | 3 | 6 | |
| ------GCTCCACTGTTGTCCCCACA----------------------------------------------------------------------------------- | 20 | 3 | - | - | - | 1 | - | 1 | 2 | - | |
| ------GCTCCACTGTTGTCCCCACAG---------------------------------------------------------------------------------- | 21 | - | - | 1 | 1 | - | 2 | - | - | 1 | |
| -----AGCTCCACTGTTGTCCCCACA----------------------------------------------------------------------------------- | 21 | 2 | - | - | - | - | - | - | - | 2 | |
| -----AGCTCCACTGTTGTCCCC-------------------------------------------------------------------------------------- | 18 | - | 1 | - | - | - | 1 | - | 1 | - | |
| -------CTCCACTGTTGTCCCCAC------------------------------------------------------------------------------------ | 18 | 1 | - | - | - | - | - | - | - | - | |
| -----AGCTCCACTGTTGTCCCCA------------------------------------------------------------------------------------- | 19 | - | - | - | 1 | - | - | - | - | - | |
| ------GCTCCACTGTTGTCCCCACAGC--------------------------------------------------------------------------------- | 22 | - | 1 | - | - | - | - | - | - | - | |
| rat | tctgcAGCTCCACTGTTGTCCCCACAGccagttccctacaccagaagctgtgcttgaaggtgcccgatacatggttgctctacagattgcccgggagccccttgtcaga | ||||||||||
| ************************************************************************************************************* | |||||||||||
| ++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000016759 ENSRNOG00000012240 Supt6h | ||||||||||
| rat | (((((((((((...((.(((....((((((((......((((..((((...))))...))))......)).)))))).......))).))...)))))....)).)))) | 0.890 -28.20 | |||||||||
| rat | chromosome:10:64407929:64408037:1 | Same_strand|Boundary_coding|ENSRNOT00000016759|ENSRNOG00000012240 ## ENSRNOG00000012240|protein_coding|Supt6h|Supt6h protein (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q4G018] |
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