other hairpins
novel_lenNOK_cloningOK_mirtron_nonpairedHIGH_bulgeHIGH (3 loci)
block446502 [novel_lenNOK_cloningOK_mirtron_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.021 | no | no | 0.50/0.56 | 18/22/0.58 | 0.0 | 2.5 | 12 | 0 | 7 | 0 | 16 | 17 | 5arm | 1 | 1 | 0.32 | 4 | 12 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | -----------------GCCCUCU------------------------------------------------------------------------------------ | 12 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T3S2 | T5S1 | T5S2 | |||
| ----------------TGCCCTCTTACCTTCTCCTACA---------------------------------------------------------------------- | 22 | 2 | 1 | - | 1 | - | 1 | 1 | |
| ----------------TGCCCTCTTACCTTCTCCT------------------------------------------------------------------------- | 19 | - | 1 | 1 | - | 1 | - | - | |
| ----------------TGCCCTCTTACCTTCTCC-------------------------------------------------------------------------- | 18 | - | - | - | 2 | - | - | - | |
| ----------------TGCCCTCTTACCTTCTCCTAC----------------------------------------------------------------------- | 21 | - | 1 | - | - | - | - | - | |
| rat | agggtcaatcagctccTGCCCTCTTACCTTCTCCTACAgaaacctggagtctcggcggtcccacctctcagaaagctgtagcataggtaagcatgttccctgaaccct | ||||||||
| ************************************************************************************************************ | |||||||||
| ++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++ | ENSRNOT00000030007 ENSRNOG00000027839 Ptk2b | ||||||||
| ++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++ | ENSRNOT00000030036 ENSRNOG00000027839 Ptk2b | ||||||||
| rat | (((((...((((.....((...(((((((....((((((....((((((....((....))...))).)))....))))))...)))))))...))...))))))))) | 0.870 -31.50 | |||||||
| rat | chromosome:15:45609844:45609951:-1 | Same_strand|Intronic_coding|ENSRNOT00000030007|ENSRNOG00000027839 ## ENSRNOG00000027839|protein_coding|Ptk2b|Protein tyrosine kinase 2 beta (EC 2.7.10.2) (Focal adhesion kinase 2) (FADK 2) (Proline-rich tyrosine kinase 2) (Cell adhesion kinase beta) (CAK beta) (Calcium-dependent tyrosine kinase) (CADTK). [Source:UniProtKB/Swiss-Prot;Acc:P70600] |
block1217799 [novel_lenNOK_cloningOK_mirtron_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.110 | no | no | 0.56/0.56 | 18/18/0.00 | 0.0 | 0.0 | 8 | 0 | 3 | 0 | 6 | 11 | 3arm | 2 | 1 | 0.50 | 5 | 10 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------CCCUUCU---------------- | 10 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T3S2 | T5S2 | |||
| ------------------------------------------TCCCTTCTGTTTCCCCCA------ | 18 | 8 | 1 | 1 | |
| rat | gagtggactagaagtgtataagatgatttaaattattttgttTCCCTTCTGTTTCCCCCAggcttt | ||||
| ****************************************************************** | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>> | ENSRNOT00000019684 ENSRNOG00000014660 NP_001099938.1 | ||||
| rat | (((((((.((((((...((((((((((....))))))))))....))))))..))).....)))). | 0.990 -13.20 | |||
| rat | chromosome:2:219624868:219624933:-1 | Same_strand|Intronic_coding|ENSRNOT00000019684|ENSRNOG00000014660 ## ENSRNOG00000014660|protein_coding|NP_001099938.1|ubiquitin specific protease 53 [Source:RefSeq_peptide;Acc:NP_001099938] |
novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_bulgeHIGH (3 loci)
sblock1395 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.203 | no | no | 0.37/0.58 | 18/23/0.63 | 0.0 3.0 0.0 0.0 | 0.5 2.7 0.0 0.0 | 2 3 1 8 | 0 0 0 0 | 1 2 1 2 | 0 0 0 0 | 2 8 45 26 | 28 16 -13 0 | 5arm 5arm 5arm_loop_3arm 3arm_loop | 23 27 27 27 | nd nd nd nd | 0.37 0.53 0.44 0.30 | 4 10 7 6 | 19 | 2 | -13 | -9 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------CUGUCUC----------------------------------------- | 8 | novel | |
| seed | -------------------------------------------------------CCUCUGU-------------------------------------------- | 3 | novel | |
| seed | ------------------------------------------------------------GUCUCAG--------------------------------------- | 2 | novel | |
| seed | ---CUCCACA------------------------------------------------------------------------------------------------ | 2 | novel | |
| seed | ---------------AGGACCA------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ------------CAAAGGA--------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------AGUCAAA------------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ----------------------------------------------CAGGCAA----------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ---------------------------------------------------------TCTGTCTCAGACCCTCCAAATTG-------------------------- | 23 | - | 8 | |
| ------------------------------------------------------TCCTCTGTCTCAGACCCTC--------------------------------- | 19 | 2 | - | |
| -----------------------------------------------------------TGTCTCAGACCCTCCAAAT---------------------------- | 19 | - | 2 | |
| --CCTCCACAGTCAAAGGACC------------------------------------------------------------------------------------- | 19 | - | 1 | |
| --------------AAGGACCAATATTGTGGTAG------------------------------------------------------------------------ | 20 | - | 1 | |
| --CCTCCACAGTCAAAGGACCA------------------------------------------------------------------------------------ | 20 | - | 1 | |
| ---------------------------------------------TCAGGCAACTCCTCTGTC------------------------------------------- | 18 | - | 1 | |
| --------CAGTCAAAGGACCAATATTG------------------------------------------------------------------------------ | 20 | 1 | - | |
| -----------TCAAAGGACCAATATTGTG---------------------------------------------------------------------------- | 19 | - | 1 | |
| ------------------------------------------------------TCCTCTGTCTCAGACCCTCCAAA----------------------------- | 23 | - | 1 | |
| rat | gacctccacagtcaaaggaccaatattgtggtagggcgtctgtggtcaggcaactccTCTGTCTCAGACCCTCCAAATTGcaagacctttacgggcactggaagtc | |||
| ********************************************************************************************************** | ||||
| rat | (((.((((..((((((((..........(((.((((..((((.((.((((.......)))))).)))))))))))..........)))))...)))..)))).))) | 0.900 -30.15 | ||
| rat | chromosome:1:51024375:51024480:1 | intergenic |
sblock10683 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.386 | no | no | 0.37/0.61 | 18/23/0.18 | 0.0 1.5 0.0 | 0.0 2.8 0.4 | 1 6 10 | 0 0 0 | 1 2 1 | 0 0 0 | 8 16 0 | 17 3 28 | 5arm 5arm 3arm | 16 16 18 | nd nd nd | 0.35 0.30 0.33 | 5 4 3 | 17 | 2 | 15 | 12 |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------------------------------------AGCAUGG----------- | 10 | novel | |
| seed | --------------------GCACACU---------------------------------------------------------------------------- | 3 | novel | |
| seed | -----------------------CACUCAG------------------------------------------------------------------------- | 2 | novel | |
| seed | ---------CCCCUGC--------------------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------GGAGCAC------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| ------------------------------------------------------------------------------------TAGCATGGTATAGTGAAG- | 18 | - | 6 | |
| ------------------------------------------------------------------------------------TAGCATGGTATAGTGAAGA | 19 | - | 4 | |
| -------------------AGCACACTCAGTATCTACA----------------------------------------------------------------- | 19 | - | 3 | |
| ----------------------ACACTCAGTATCTACATGGACCC---------------------------------------------------------- | 23 | - | 2 | |
| --------TCCCCTGCTGGAGCACACTCAGT------------------------------------------------------------------------ | 23 | - | 1 | |
| ----------------TGGAGCACACTCAGTATCT-------------------------------------------------------------------- | 19 | 1 | - | |
| rat | tcaggatgtcccctgctggAGCACACTCAGTATCTACATGGACCCcctttggcattagtaggtcctagaagaggctaatgggtgTAGCATGGTATAGTGAAGA | |||
| ******************************************************************************************************* | ||||
| rat | (((...(((.((.((((.....(((((((((.(((....(((((..((........))..)))))....))).)))...)))))))))).)).))).)))... | 0.650 -27.90 | ||
| rat | chromosome:7:18791852:18791954:-1 | intergenic |
sblock10693 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.386 | no | no | 0.37/0.61 | 18/23/0.18 | 0.0 1.5 0.0 | 0.0 2.8 0.4 | 1 6 10 | 0 0 0 | 1 2 1 | 0 0 0 | 8 16 0 | 17 3 28 | 5arm 5arm 3arm | 16 16 18 | nd nd nd | 0.35 0.30 0.33 | 5 4 3 | 17 | 2 | 15 | 12 |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------------------------------------AGCAUGG----------- | 10 | novel | |
| seed | --------------------GCACACU---------------------------------------------------------------------------- | 3 | novel | |
| seed | -----------------------CACUCAG------------------------------------------------------------------------- | 2 | novel | |
| seed | ---------CCCCUGC--------------------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------GGAGCAC------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| ------------------------------------------------------------------------------------TAGCATGGTATAGTGAAG- | 18 | - | 6 | |
| ------------------------------------------------------------------------------------TAGCATGGTATAGTGAAGA | 19 | - | 4 | |
| -------------------AGCACACTCAGTATCTACA----------------------------------------------------------------- | 19 | - | 3 | |
| ----------------------ACACTCAGTATCTACATGGACCC---------------------------------------------------------- | 23 | - | 2 | |
| --------TCCCCTGCTGGAGCACACTCAGT------------------------------------------------------------------------ | 23 | - | 1 | |
| ----------------TGGAGCACACTCAGTATCT-------------------------------------------------------------------- | 19 | 1 | - | |
| rat | tcaggatgtcccctgctggAGCACACTCAGTATCTACATGGACCCcctttggcattagtaggtcctagaagaggctaatgggtgTAGCATGGTATAGTGAAGA | |||
| ******************************************************************************************************* | ||||
| rat | (((...(((.((.((((.....(((((((((.(((....(((((..((........))..)))))....))).)))...)))))))))).)).))).)))... | 0.650 -27.90 | ||
| rat | chromosome:7:18799419:18799521:-1 | intergenic |
block1225724 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.705 | no | no | 0.45/0.61 | 18/25/0.64 | 0.0 2.8 2.0 | 0.0 3.0 5.5 | 1 6 4 | 0 0 0 | 1 4 3 | 0 0 0 | 20 26 25 | 0 -20 -17 | 5arm 5arm_loop 3arm_loop | 22 22 22 | nd nd nd | 0.47 0.76 0.72 | 4 13 12 | 11 | 6 | 0 | 0 |
| reads | miRBase family seed | |||||||
| seed | --------------------------------AUCAAGC----------------------------------------------------------- | 2 | novel | |||||
| seed | ---------------------------------------------CCACCAU---------------------------------------------- | 1 | novel | |||||
| seed | --------------------------------------CGCAAUA----------------------------------------------------- | 1 | novel | |||||
| seed | ------------------------------------------------CCAUUCC------------------------------------------- | 1 | novel | |||||
| seed | ---------------------UGACUGU---------------------------------------------------------------------- | 1 | novel | |||||
| seed | ----------------------------------------------CACCAUU--------------------------------------------- | 1 | novel | |||||
| seed | ---------------------------------UCAAGCG---------------------------------------------------------- | 1 | novel | |||||
| seed | ---------------------------UCCUCAU---------------------------------------------------------------- | 1 | novel | |||||
| seed | -------------------------------------------------CAUUCCC------------------------------------------ | 1 | novel | |||||
| seed | -------------------------------------GCGCAAU------------------------------------------------------ | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S2 | T2S1 | T2S2 | T4S1 | T5S1 | T5S2 | |||
| -------------------------------CATCAAGCGCAATACCACCA----------------------------------------------- | 20 | - | - | - | 2 | - | - | |
| --------------------------GTCCTCATCAAGCGCAATACCACCA----------------------------------------------- | 25 | - | - | - | 1 | - | - | |
| ------------------------------------------------CCATTCCCACCAAGCAGACCCAGAC------------------------- | 25 | - | - | - | 1 | - | - | |
| ------------------------------------AGCGCAATACCACCATTCCCAC---------------------------------------- | 22 | - | - | 1 | - | - | - | |
| --------------------ATGACTGTCCTCATCAAGC----------------------------------------------------------- | 19 | - | - | - | - | - | 1 | |
| --------------------------------------------ACCACCATTCCCACCAAG------------------------------------ | 18 | - | 1 | - | - | - | - | |
| ---------------------------------------------CCACCATTCCCACCAAGCAGACC------------------------------ | 23 | - | - | - | 1 | - | - | |
| -----------------------------------------------ACCATTCCCACCAAGCAGAC------------------------------- | 20 | 1 | - | - | - | - | - | |
| --------------------------------ATCAAGCGCAATACCACCATTC-------------------------------------------- | 22 | - | - | - | - | - | 1 | |
| -------------------------------------GCGCAATACCACCATTCCCACC--------------------------------------- | 22 | - | - | - | - | 1 | - | |
| rat | tggaaactactagtggagtcATGACTGTCCTCATCAAGCGCAATACCACCATTCCCACCAAGCAGACCCAGACtttcaccacctactctgaaaaccag | |||||||
| ************************************************************************************************** | ||||||||
| rat | (((........(((((.((..(((..(((....((..((......................)).))....)))..)))..))))))).......))). | 0.410 -11.61 | ||||||
| rat | chromosome:2:236510982:236511079:-1 | intergenic |
sblock224 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.466 | no | no | 0.37/0.58 | 18/25/0.36 | 0.2 1.2 1.7 1.7 | 2.2 1.0 2.7 0.3 | 4 10 3 6 | 0 0 0 0 | 3 2 2 3 | 0 0 0 0 | 13 22 13 3 | 6 -6 2 12 | 5arm 5arm_loop 3arm 3arm | 25 37 37 37 | nd nd nd nd | 0.50 0.50 0.36 0.37 | 7 7 5 4 | 25 | 4 | -16 | 0 |
| reads | miRBase family seed | |||||
| seed | -----------------------GCUUCUU--------------------------------------------------------------- | 8 | novel | |||
| seed | -------------------------------------------------------------------CCACUGU------------------- | 4 | novel | |||
| seed | ------------------------------------------------------------------------GUCCCAG-------------- | 4 | novel | |||
| seed | --------------GGCACCA------------------------------------------------------------------------ | 3 | novel | |||
| seed | ---------------------------------------------------------AGCAGAA----------------------------- | 2 | novel | |||
| seed | -----------------------------UCUUUGC--------------------------------------------------------- | 2 | novel | |||
| seed | --------------------------------------------------------------AACUUCC------------------------ | 1 | novel | |||
| seed | ---------------GCACCAU----------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T4S1 | T4S2 | T5S1 | |||
| ----------------------TGCTTCTTCTTTGCATGCACTTTGA---------------------------------------------- | 25 | - | - | - | 6 | |
| -----------------------------------------------------------------------TGTCCCAGCACCTGAACTA--- | 19 | - | - | - | 4 | |
| ------------------------------------------------------------------TCCACTGTCCCAGCACCTGAACT---- | 23 | 1 | - | 1 | 2 | |
| ----------------------TGCTTCTTCTTTGCATGCAC--------------------------------------------------- | 20 | 2 | - | - | - | |
| ----------------------------TTCTTTGCATGCACTTTGA---------------------------------------------- | 19 | - | - | - | 2 | |
| --------------------------------------------------------TAGCAGAACTTCCACTGTC------------------ | 19 | - | - | - | 1 | |
| -------------TGGCACCATTGCTTCTTCTTTG---------------------------------------------------------- | 22 | - | 1 | - | - | |
| --------------------------------------------------------TAGCAGAACTTCCACTGTCCCA--------------- | 22 | - | 1 | - | - | |
| -------------TGGCACCATTGCTTCTTC-------------------------------------------------------------- | 18 | - | - | 1 | - | |
| -------------TGGCACCATTGCTTCTTCTTT----------------------------------------------------------- | 21 | 1 | - | - | - | |
| --------------GGCACCATTGCTTCTTCTT------------------------------------------------------------ | 19 | - | - | 1 | - | |
| -------------------------------------------------------------GAACTTCCACTGTCCCAGC------------- | 19 | - | - | - | 1 | |
| rat | ggacatgtttggctggcaccatTGCTTCTTCTTTGCATGCACTTTGAtatcccctgtagcagaactTCCACTGTCCCAGCACCTGAACTAtcc | |||||
| ********************************************************************************************* | ||||||
| rat | (((...((((.(((((.((...((.......(((((.((((.............))))))))).....))..)).)))))....))))..))) | 0.500 -16.32 | ||||
| rat | chromosome:1:49951582:49951674:-1 | intergenic |
sblock3487 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.303 | no | no | 0.16/0.58 | 19/25/0.20 | 1.5 1.5 0.3 0.0 0.0 | 1.5 3.0 1.7 0.0 0.0 | 2 2 3 1 2 | 0 0 0 0 0 | 2 2 2 1 1 | 0 0 0 0 0 | 0 25 17 10 3 | 19 -9 -9 0 11 | 5arm 5arm_loop_3arm 3arm_loop 3arm 3arm | 253 253 253 253 253 | nd nd nd nd nd | 0.58 0.42 0.52 0.48 0.47 | 7 4 8 6 7 | 10 | 6 | 0 | -22 |
| reads | miRBase family seed | |||||||
| seed | --------------------------------------------------------------GUCCCUC-------------- | 2 | miR-347 | |||||
| seed | -------------------------------------------GCAUAGA--------------------------------- | 2 | novel | |||||
| seed | ------------------------------------------GGCAUAG---------------------------------- | 1 | novel | |||||
| seed | -----------------------------UCCAAGU----------------------------------------------- | 1 | novel | |||||
| seed | --------------------------CACUCCA-------------------------------------------------- | 1 | novel | |||||
| seed | ---------------------------------------------------GGUUACA------------------------- | 1 | novel | |||||
| seed | ----UGUUUUU------------------------------------------------------------------------ | 1 | novel | |||||
| seed | -UUUUGUU--------------------------------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T2S2 | T3S1 | T3S2 | T4S2 | T5S1 | |||
| -------------------------------------------------------------AGTCCCTCACCCTCCCAAA--- | 19 | 2 | - | - | - | - | - | |
| ------------------------------------------GGCATAGATGGTTACAGGA---------------------- | 19 | - | - | 2 | - | - | - | |
| TTTTTGTTTTTGGTTTTTT---------------------------------------------------------------- | 19 | 1 | - | - | - | - | - | |
| -------------------------TCACTCCAAGTATCCACGG--------------------------------------- | 19 | - | 1 | - | - | - | - | |
| ----------------------------CTCCAAGTATCCACGGCATAGA--------------------------------- | 22 | - | - | 1 | - | - | - | |
| ---TTGTTTTTGGTTTTTTTAA------------------------------------------------------------- | 19 | - | - | - | 1 | - | - | |
| --------------------------------------------------TGGTTACAGGAAGTCCCTCACCC---------- | 23 | - | - | - | - | 1 | - | |
| -----------------------------------------CGGCATAGATGGTTACAGGAAGTCC----------------- | 25 | - | - | - | - | - | 1 | |
| rat | TTTTTGTTTTTGGTTTTTTTAAtagTCACTCCAAGTATCCACGGCATAGATGGTTACAGGAAGTCCCTCACCCTCCCAAAagc | |||||||
| *********************************************************************************** | ||||||||
| rat | .....((((((((..........((..(((((..(((.(((.........))).))).))).))..)).......)))))))) | 0.520 -12.53 | ||||||
| rat | chromosome:12:12050263:12050345:1 | intergenic ## {Repeats: dust 12050262 12050282 0 class=dust} |
novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_shortStem_nonpairedHIGH_bulgeHIGH (3 loci)
block421600 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.206 | no | no | 0.39/0.44 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 36 7 | 0 0 | 2 2 | 0 0 | 0 8 | 31 20 | 5arm 3arm | 13 13 | nd nd | 0.39 0.32 | 4 4 | 44 | 2 | 0 | -3 |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------------------------CCUUACA------------------ | 18 | novel | |
| seed | -CCUUACA-------------------------------------------------------------------------------------------------- | 18 | novel | |
| seed | --------------------------------------------------------------------------------GCCUUAC------------------- | 8 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| --------------------------------------------------------------------------------GCCTTACATATTGTGGAT-------- | 18 | 13 | 5 | |
| GCCTTACATATTGTGGAT---------------------------------------------------------------------------------------- | 18 | 13 | 5 | |
| -------------------------------------------------------------------------------GGCCTTACATATTGTGGAT-------- | 19 | 5 | 2 | |
| -------------------------------------------------------------------------------GGCCTTACATATTGTGGA--------- | 18 | 1 | - | |
| rat | GCCTTACATATTGTGGATaacggggcaactgcgcaggtcagccttacgtactgcggataacggggcaactgcgcaggccGGCCTTACATATTGTGGATaaccgggc | |||
| ********************************************************************************************************** | ||||
| -------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000012750 ENSRNOG00000009281 Commd1 | |||
| rat | ((((..((((.((((......(((((..((((((((....((((..(((..........)))))))..))))))))....))))).)))).)))).......)))) | 0.870 -36.10 | ||
| rat | chromosome:14:103657098:103657203:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000056897|ENSRNOG00000009281 ## Opposite_strand|Intronic_coding|ENSRNOT00000012750|ENSRNOG00000009281 ## ENSRNOG00000009281|protein_coding|Commd1|COMM domain containing 1 Gene [Source:MGI (curated);Acc:Commd1-001] ## {Repeats: trf 501 520 0 class=trf} |
block421601 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.206 | no | no | 0.39/0.44 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 36 7 | 0 0 | 2 2 | 0 0 | 0 8 | 31 20 | 5arm 3arm | 13 13 | nd nd | 0.39 0.32 | 4 4 | 44 | 2 | 0 | -3 |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------------------------CCUUACA------------------ | 18 | novel | |
| seed | -CCUUACA-------------------------------------------------------------------------------------------------- | 18 | novel | |
| seed | --------------------------------------------------------------------------------GCCUUAC------------------- | 8 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| --------------------------------------------------------------------------------GCCTTACATATTGTGGAT-------- | 18 | 13 | 5 | |
| GCCTTACATATTGTGGAT---------------------------------------------------------------------------------------- | 18 | 13 | 5 | |
| -------------------------------------------------------------------------------GGCCTTACATATTGTGGAT-------- | 19 | 5 | 2 | |
| -------------------------------------------------------------------------------GGCCTTACATATTGTGGA--------- | 18 | 1 | - | |
| rat | GCCTTACATATTGTGGATaacggggcaactgcgcaggtcagccttacgtactgcggataacggggcaactgcgcaggccGGCCTTACATATTGTGGATaaccgggc | |||
| ********************************************************************************************************** | ||||
| -------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000012750 ENSRNOG00000009281 Commd1 | |||
| rat | ((((..((((.((((......(((((..((((((((....((((..(((..........)))))))..))))))))....))))).)))).)))).......)))) | 0.870 -36.10 | ||
| rat | chromosome:14:103657098:103657203:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000056897|ENSRNOG00000009281 ## Opposite_strand|Intronic_coding|ENSRNOT00000012750|ENSRNOG00000009281 ## ENSRNOG00000009281|protein_coding|Commd1|COMM domain containing 1 Gene [Source:MGI (curated);Acc:Commd1-001] ## {Repeats: trf 421 440 0 class=trf} |
| Back to summary page | other hairpins: | Page 1 | Jump 10 pages back | Previous page | Page 31121 | Next page | Jump 10 pages forward | Page 31204 |
©2008 InteRNA Genomics B.V.