other hairpins
novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_shortStem_nonpairedHIGH_bulgeHIGH (3 loci)
block421604 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.057 | no | no | 0.39/0.44 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 36 7 | 0 0 | 2 2 | 0 0 | 0 8 | 29 27 | 5arm 3arm | 13 13 | nd nd | 0.39 0.53 | 4 5 | 44 | 2 | 0 | -3 |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------------------------CCUUACA------------------ | 18 | novel | |
| seed | -CCUUACA-------------------------------------------------------------------------------------------------- | 18 | novel | |
| seed | --------------------------------------------------------------------------------GCCUUAC------------------- | 8 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| --------------------------------------------------------------------------------GCCTTACATATTGTGGAT-------- | 18 | 13 | 5 | |
| GCCTTACATATTGTGGAT---------------------------------------------------------------------------------------- | 18 | 13 | 5 | |
| -------------------------------------------------------------------------------GGCCTTACATATTGTGGAT-------- | 19 | 5 | 2 | |
| -------------------------------------------------------------------------------GGCCTTACATATTGTGGA--------- | 18 | 1 | - | |
| rat | GCCTTACATATTGTGGATaaccgggcaactgcgcaggctggccttacattttgtggataaccgggcaactgcgcaggccGGCCTTACATATTGTGGATaaccaggc | |||
| ********************************************************************************************************** | ||||
| -------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000012750 ENSRNOG00000009281 Commd1 | |||
| rat | ((((..((((.((((.....((((....((((((((....(((((((.....))).......))))..)))))))).)))).....)))).)))).......)))) | 0.790 -36.91 | ||
| rat | chromosome:14:103657178:103657283:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000056897|ENSRNOG00000009281 ## Opposite_strand|Intronic_coding|ENSRNOT00000012750|ENSRNOG00000009281 ## ENSRNOG00000009281|protein_coding|Commd1|COMM domain containing 1 Gene [Source:MGI (curated);Acc:Commd1-001] ## {Repeats: trf 341 360 0 class=trf} |
novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH_nonpairedHIGH (3 loci)
sblock11665 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.121 | no | no | 0.38/0.47 | 19/25/0.53 | 0.0 1.5 | 0.0 3.1 | 1 14 | 0 0 | 1 4 | 0 0 | 6 0 | 9 7 | 5arm 3arm | 1 1 | nd nd | 0.37 0.35 | 3 3 | 15 | 4 | 6 | 7 |
| reads | miRBase family seed | |||||
| seed | -----------------------------------------------------CGCUAAU----------------- | 9 | novel | |||
| seed | -----------------------------------------------CAUGCUC----------------------- | 2 | novel | |||
| seed | --------------------------------------------------GCUCGCU-------------------- | 2 | novel | |||
| seed | -------AGCAAUU--------------------------------------------------------------- | 1 | novel | |||
| seed | --------------------------------------------------------UAAUGUC-------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T4S2 | T5S1 | |||
| ----------------------------------------------------TCGCTAATGTCTTCTTCCTTGACTT | 25 | - | 3 | 1 | 2 | |
| ----------------------------------------------------TCGCTAATGTCTTCTTCCTTGAC-- | 23 | 1 | - | - | 2 | |
| -------------------------------------------------TGCTCGCTAATGTCTTCTTC-------- | 20 | - | - | - | 2 | |
| ----------------------------------------------TCATGCTCGCTAATGTCTTCT---------- | 21 | - | - | 1 | 1 | |
| ------TAGCAATTGGAGAGAGGGA---------------------------------------------------- | 19 | - | - | - | 1 | |
| -------------------------------------------------------CTAATGTCTTCTTCCTTGACT- | 21 | - | - | - | 1 | |
| rat | aaggacTAGCAATTGGAGAGAGGGAaggttaagataatttctgcccTCATGCTCGCTAATGTCTTCTTCCTTGACTT | |||||
| ***************************************************************************** | ||||||
| rat | (((((..((..(((((.(((...((.(((..(((.....)))))).))...))).)))))..))...)))))..... | 1.000 -19.30 | ||||
| rat | chromosome:8:57731655:57731731:-1 | intergenic |
sblock1926 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.225 | no | no | 0.40/0.50 | 19/26/0.63 | 1.6 0.5 0.0 0.0 | 0.4 3.5 0.0 0.0 | 10 2 1 1 | 0 0 0 0 | 4 2 1 1 | 0 0 0 0 | 2 25 18 10 | 10 -15 -4 3 | 5arm 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 1 | nd nd nd nd | 0.40 0.42 0.40 0.38 | 4 5 3 3 | 19 | 5 | 0 | 11 |
| reads | miRBase family seed | ||||||
| seed | -------AGCAACA-------------------------------------------------------------- | 7 | novel | ||||
| seed | ---CCAUAGC------------------------------------------------------------------ | 5 | novel | ||||
| seed | -CUCCAUA-------------------------------------------------------------------- | 2 | novel | ||||
| seed | ----------------------------------------------GAAGACA----------------------- | 1 | novel | ||||
| seed | ---------------------------AGGUCUA------------------------------------------ | 1 | novel | ||||
| seed | ---------------------------------------GAACAGG------------------------------ | 1 | novel | ||||
| seed | --------------------------UAGGUCU------------------------------------------- | 1 | novel | ||||
| seed | ---------CAACAGU------------------------------------------------------------ | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------TAGCAACAGTCACTGCTTCT-------------------------------------------------- | 20 | - | 1 | - | 6 | - | |
| --TCCATAGCAACAGTCACTGCTTCTT------------------------------------------------- | 25 | - | - | - | 4 | - | |
| TCTCCATAGCAACAGTCACTG------------------------------------------------------- | 21 | - | - | - | 1 | 1 | |
| --TCCATAGCAACAGTCACTG------------------------------------------------------- | 19 | - | - | 1 | - | - | |
| --------------------------------------TGAACAGGGAAGACAGGAGA------------------ | 20 | - | - | - | 1 | - | |
| -------------------------TTAGGTCTACTGATGAACAG------------------------------- | 20 | - | - | - | 1 | - | |
| --------------------------TAGGTCTACTGATGAACAGGGAAGAC------------------------ | 26 | 1 | - | - | - | - | |
| --------GCAACAGTCACTGCTTCTT------------------------------------------------- | 19 | - | - | - | 1 | - | |
| ---------------------------------------------GGAAGACAGGAGATTTGACAC---------- | 21 | - | - | - | 1 | - | |
| rat | tcTCCATAGCAACAGTCACTGCTTCTTaggtctactgatgaacagggaagacaggagatttgacaccgtttgagaa | ||||||
| **************************************************************************** | |||||||
| rat | ((((...(((....((((...(((((...((((.(((.....)))...)))))))))...))))...))).)))). | 0.930 -17.40 | |||||
| rat | chromosome:1:128272635:128272710:1 | intergenic |
sblock1948 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.067 | no | no | 0.37/0.61 | 18/25/0.45 | 1.9 0.0 | 4.2 0.0 | 10 1 | 0 0 | 3 1 | 0 0 | 0 20 | 11 -2 | 5arm 3arm_loop | 1 2 | nd nd | 0.32 0.33 | 3 3 | 11 | 3 | 0 | -18 |
| reads | miRBase family seed | ||||
| seed | -----AGUAAAC-------------------------------------------------------------------- | 5 | novel | ||
| seed | --------AAACUGU----------------------------------------------------------------- | 3 | novel | ||
| seed | -------------------------------------------GAGCUAG------------------------------ | 1 | novel | ||
| seed | -GGACAGU------------------------------------------------------------------------ | 1 | novel | ||
| seed | -----------CUGUGUU-------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T2S2 | T5S1 | |||
| -------TAAACTGTGTTGTACAAGCCCT--------------------------------------------------- | 22 | - | 1 | 2 | |
| ----CAGTAAACTGTGTTGTACA--------------------------------------------------------- | 19 | - | - | 2 | |
| ----CAGTAAACTGTGTTGTACAAGCCCT--------------------------------------------------- | 25 | - | - | 2 | |
| ----CAGTAAACTGTGTTGTACAAGCCC---------------------------------------------------- | 24 | - | - | 1 | |
| ------------------------------------------TGAGCTAGCGCTGGGCTT-------------------- | 18 | - | - | 1 | |
| CGGACAGTAAACTGTGTTGTACAA-------------------------------------------------------- | 24 | 1 | - | - | |
| ----------ACTGTGTTGTACAAGCCCT--------------------------------------------------- | 19 | - | - | 1 | |
| rat | CGGACAGTAAACTGTGTTGTACAAGCCCTaaagcaatgctcaTGAGCTAGCGCTGGGCTTgatggctgtggccctgaccc | ||||
| ******************************************************************************** | |||||
| rat | .((.(((...((...(((((.(((((((....((...(((....)))..))...)))))))))))).))....))).)). | 0.400 -26.20 | |||
| rat | chromosome:1:128296641:128296720:1 | intergenic |
novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_nonpairedHIGH (3 loci)
sblock4042 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.365 | no | no | 0.37/0.47 | 19/21/0.65 | 0.7 0.0 0.0 | 0.3 0.0 0.7 | 3 1 18 | 0 0 0 | 2 1 1 | 0 0 0 | 29 6 0 | -4 29 33 | 5arm_loop 3arm 3arm | 1 1 2 | nd nd nd | 0.50 0.37 0.37 | 4 3 3 | 23 | 2 | -17 | -19 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------------------------------AUCAUGA------------- | 18 | novel | |
| seed | ------------------------------CUAACGU--------------------------------------------------------------------- | 2 | novel | |
| seed | ----------------------------------------------------------------------------------CAAUAUC----------------- | 1 | novel | |
| seed | ----------------------------------------------------------------------------------------CAUGAUG----------- | 1 | novel | |
| seed | --------------------------------AACGUAA------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| -------------------------------------------------------------------------------------TATCATGATGTGCAGCTCTGT | 21 | - | 10 | |
| -------------------------------------------------------------------------------------TATCATGATGTGCAGCTCT-- | 19 | - | 5 | |
| -------------------------------------------------------------------------------------TATCATGATGTGCAGCTCTG- | 20 | - | 3 | |
| -----------------------------TCTAACGTAATGACTTGGGT--------------------------------------------------------- | 20 | 1 | 1 | |
| ---------------------------------------------------------------------------------TCAATATCATGATGTGCAG------ | 19 | - | 1 | |
| -------------------------------TAACGTAATGACTTGGGTT-------------------------------------------------------- | 19 | - | 1 | |
| ---------------------------------------------------------------------------------------TCATGATGTGCAGCTCTGT | 19 | - | 1 | |
| rat | agtagcttcatgataaggtagattctgaatctaacgtaatgacttgggttaacaagataactggggtgggggaggtgctattcaaTATCATGATGTGCAGCTCTGT | |||
| ********************************************************************************************************** | ||||
| rat | (((.((.((((((((.(((((.((((..((((...((.((..((((......)))))).))..))))..))))....)))))...))))))))...)).))).... | 0.640 -23.70 | ||
| rat | chromosome:14:42005929:42006034:-1 | intergenic |
sblock5103 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.062 | no | no | 0.37/0.60 | 18/20/0.10 | 0.5 0.0 | 0.5 0.0 | 13 2 | 0 0 | 3 1 | 0 0 | 3 0 | 8 4 | 5arm 3arm | 3 3 | nd nd | 0.63 0.37 | 6 3 | 20 | 3 | 0 | 3 |
| reads | miRBase family seed | ||||
| seed | ----AGGAUCA--------------------------------------------------- | 12 | novel | ||
| seed | -----GGAUCAU-------------------------------------------------- | 6 | novel | ||
| seed | -------------------------------------------AGAGUCC------------ | 2 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T2S1 | T5S1 | |||
| ---GAGGATCATTAGACTGTGT---------------------------------------- | 19 | 2 | 1 | 7 | |
| ----AGGATCATTAGACTGTGTA--------------------------------------- | 19 | - | - | 6 | |
| ------------------------------------------TAGAGTCCCTCCACTGCCTC | 20 | - | - | 2 | |
| ---GAGGATCATTAGACTGTG----------------------------------------- | 18 | - | - | 2 | |
| rat | gcaGAGGATCATTAGACTGTGTAaatatggcacctgtagccatagagtccctccactgcctc | ||||
| ************************************************************** | |||||
| rat | ((((.(((......((((.......((((((.......)))))).))))..))).))))... | 0.690 -16.60 | |||
| rat | chromosome:17:20678945:20679006:-1 | intergenic |
sblock579 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.094 | no | no | 0.58/0.72 | 18/19/0.00 | 0.1 0.0 0.0 | 0.1 0.0 0.0 | 14 2 1 | 0 0 0 | 7 1 1 | 0 0 0 | 1 14 1 | 5 -6 6 | 5arm 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.42 0.50 0.37 | 3 5 3 | 17 | 7 | 0 | -10 |
| reads | miRBase family seed | ||||||||
| seed | --GGGGGUG--------------------------------------------------------- | 13 | novel | ||||||
| seed | -----------------------------------AGGGACA------------------------ | 2 | novel | ||||||
| seed | -----------------------------------------------CCCAACA------------ | 1 | novel | ||||||
| seed | ---GGGGUGU-------------------------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S2 | |||
| -TGGGGGTGTTTGGGGGGG----------------------------------------------- | 18 | 3 | 1 | 3 | 3 | 1 | 1 | 1 | |
| ----------------------------------CAGGGACAGCCGACCCAA-------------- | 18 | - | - | - | - | 2 | - | - | |
| ----------------------------------------------ACCCAACAGACTGCAGAGC- | 19 | - | - | - | - | 1 | - | - | |
| --GGGGGTGTTTGGGGGGGAA--------------------------------------------- | 19 | 1 | - | - | - | - | - | - | |
| rat | gTGGGGGTGTTTGGGGGGGAAggctgggcgcacaCAGGGACAGCCGACCCAACAGACTGCAGAGCt | ||||||||
| ****************************************************************** | |||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000026599 ENSRNOG00000019660 MGC109046 | ||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000026625 ENSRNOG00000019660 MGC109046 | ||||||||
| rat | ((....(((((((..(((...(((((..............)))))..)))..))))).))...)). | 0.990 -23.34 | |||||||
| rat | chromosome:1:95009318:95009383:-1 | Same_strand|Intronic_coding|ENSRNOT00000026599|ENSRNOG00000019660 ## ENSRNOG00000019660|protein_coding|MGC109046|Transcription factor Spi-B. [Source:UniProtKB/Swiss-Prot;Acc:Q5EBA3] ## {Repeats: dust 95009365 95009383 0 class=dust} |
novel_lenNOK_cloningOK_multiarm_DicerOK_5varHIGH_loopOverlap_bulgeHIGH (3 loci)
sblock5538 [novel_lenNOK_cloningOK_multiarm_DicerOK_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.980 | no | no | 0.38/0.63 | 19/26/0.58 | 7.7 0.0 3.3 0.0 | 6.0 0.0 2.7 0.0 | 3 1 6 1 | 0 0 0 0 | 2 1 1 1 | 0 0 0 0 | 4 24 37 21 | 10 3 -18 8 | 5arm 5arm 5arm_loop_3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.50 0.33 0.29 0.42 | 6 4 4 4 | 12 | 2 | 3 | 2 |
| reads | miRBase family seed | |||
| seed | --------------------------------------AGGUGAC------------------------------------------------------- | 5 | novel | |
| seed | ------------------------------------------------GUCUGUU--------------------------------------------- | 2 | novel | |
| seed | --------------------CCAAGAA------------------------------------------------------------------------- | 1 | novel | |
| seed | -------------GGGUAAU-------------------------------------------------------------------------------- | 1 | novel | |
| seed | -----GAGAGAA---------------------------------------------------------------------------------------- | 1 | novel | |
| seed | -------------------------------------------------------------CCCCGCG-------------------------------- | 1 | novel | |
| seed | -------------------------AAAGCAC-------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -------------------------------------TAGGTGACAATGTCTGTTGTC------------------------------------------ | 21 | - | 4 | |
| -----------------------------------------------TGTCTGTTGTCCGACCCCG---------------------------------- | 19 | - | 2 | |
| ------------------------------------------------------------ACCCCGCGTCTGTTGAAGA--------------------- | 19 | - | 1 | |
| ------------TGGGTAATCCAAGAAAGCACGGCT---------------------------------------------------------------- | 24 | - | 1 | |
| ----TGAGAGAATGGGTAATCCAAGAAA------------------------------------------------------------------------ | 24 | 1 | - | |
| -------------------------------------TAGGTGACAATGTCTGTTGTCCGACC------------------------------------- | 26 | - | 1 | |
| ------------------------GAAAGCACGGCTATAGGTGAC------------------------------------------------------- | 21 | - | 1 | |
| -------------------TCCAAGAAAGCACGGCTAT-------------------------------------------------------------- | 19 | - | 1 | |
| rat | gttttgagagaatgggtaatccaagaaagcacggctaTAGGTGACAATGTCTGTTGTCCGACCCCGcgtctgttgaagaatcccactgggtctgaatacc | |||
| **************************************************************************************************** | ||||
| rat | ((.((.(((...((((...((......((((.(((....(((((((((....))))))..)))....)))))))...))..)))).....))).)).)). | 0.450 -19.40 | ||
| rat | chromosome:18:63566291:63566390:-1 | intergenic |
sblock6072 [novel_lenNOK_cloningOK_multiarm_DicerOK_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.551 | no | no | 0.32/0.43 | 19/23/0.43 | 0.0 0.0 0.5 0.0 1.2 | 0.0 0.0 1.0 0.0 0.2 | 4 1 2 2 5 | 0 0 0 0 0 | 3 1 2 1 1 | 0 0 0 0 0 | 32 39 43 38 26 | 2 -5 -12 -4 3 | 5arm 5arm_loop 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.21 0.37 0.45 0.47 0.43 | 4 6 10 6 6 | 14 | 5 | 1 | 1 |
| reads | miRBase family seed | ||||||
| seed | ---------------------------------ACCUUCU---------------------------------------------------------------------------- | 4 | novel | ||||
| seed | -------------------------------------------------------------------GGCAUGA------------------------------------------ | 3 | novel | ||||
| seed | ----------------------------------------------------------------------AUGAUGU--------------------------------------- | 2 | novel | ||||
| seed | ------------------------------------------------------------ACUGUUU------------------------------------------------- | 2 | novel | ||||
| seed | --------------------------------------------AACCCAA----------------------------------------------------------------- | 1 | novel | ||||
| seed | ----------------------------------------CCAUAAC--------------------------------------------------------------------- | 1 | novel | ||||
| seed | ---------------------------------------------ACCCAAA---------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S1 | T3S2 | T5S1 | |||
| --------------------------------TACCTTCTCCATAACCCAA----------------------------------------------------------------- | 19 | - | 1 | - | 2 | 1 | |
| ------------------------------------------------------------------TGGCATGATGTTATGTTGGGTGA--------------------------- | 23 | - | - | - | - | 3 | |
| -----------------------------------------------------------TACTGTTTGGCATGATGTT-------------------------------------- | 19 | - | - | - | - | 2 | |
| --------------------------------------------AACCCAAATTTCCTTTACT----------------------------------------------------- | 19 | 1 | - | - | - | - | |
| ---------------------------------------------------------------------CATGATGTTATGTTGGGTGAT-------------------------- | 21 | - | - | - | - | 1 | |
| ---------------------------------------TCCATAACCCAAATTTCCT---------------------------------------------------------- | 19 | - | - | 1 | - | - | |
| ---------------------------------------------------------------------CATGATGTTATGTTGGGTGA--------------------------- | 20 | - | - | - | - | 1 | |
| -------------------------------------------TAACCCAAATTTCCTTTACTGT--------------------------------------------------- | 22 | - | - | - | - | 1 | |
| rat | accatatgcgcaggtcaatttttttatgcttaTACCTTCTCCATAACCCAAATTTCCTTTACTGTTTGGCATGATGTTATGTTGGGTGATattgtgaatataccctcagttttggt | ||||||
| ******************************************************************************************************************** | |||||||
| rat | ((((...((..(((........(((((.....(((((....((((((((((((..........))))))......))))))..))))).....))))).....)))..))..)))) | 0.780 -18.82 | |||||
| rat | chromosome:2:105715814:105715929:-1 | intergenic |
sblock9062 [novel_lenNOK_cloningOK_multiarm_DicerOK_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.104 | no | no | 0.37/0.57 | 19/25/0.53 | 9.6 0.0 2.3 0.0 | 6.7 0.0 2.2 0.0 | 7 1 6 1 | 0 0 0 0 | 2 1 1 1 | 0 0 0 0 | 2 42 16 2 | 3 -15 -2 21 | 5arm 5arm_loop_3arm 3arm 3arm | 1 1 2 2 | nd nd nd nd | 0.40 0.53 0.48 0.25 | 5 5 6 4 | 15 | 3 | 3 | 1 |
| reads | miRBase family seed | ||||
| seed | ----------------------------------------------------------CUCUCUC----------------------------- | 3 | novel | ||
| seed | -------------------------------------------------------AAUCUCU-------------------------------- | 2 | novel | ||
| seed | ---UCCUUUC------------------------------------------------------------------------------------ | 2 | novel | ||
| seed | -------------------------------------------------------------------------AGGAGUA-------------- | 1 | novel | ||
| seed | --------------------UCAAUAC------------------------------------------------------------------- | 1 | novel | ||
| seed | -----------CCCUCAU---------------------------------------------------------------------------- | 1 | novel | ||
| seed | ------------------CUUCAAU--------------------------------------------------------------------- | 1 | novel | ||
| seed | --------------------------------------------------GUCUCAA------------------------------------- | 1 | novel | ||
| seed | ------------CCUCAUC--------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------CAAUACG------------------------------------------------------------------ | 1 | novel | ||
| seed | -------------------------------------------AGGAAAA-------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S2 | T4S2 | T5S1 | |||
| ---------------------------------------------------------TCTCTCTCTTCACCCCAGGAG---------------- | 21 | - | - | 3 | |
| --GTCCTTTCTCCCTCATCTTCAATAC------------------------------------------------------------------- | 25 | - | 1 | 1 | |
| -----------CCCTCATCTTCAATACGGTGGG------------------------------------------------------------- | 22 | - | - | 1 | |
| -------------------TTCAATACGGTGGGCATGT-------------------------------------------------------- | 19 | - | - | 1 | |
| ----------TCCCTCATCTTCAATACGG----------------------------------------------------------------- | 19 | - | 1 | - | |
| --------------------TCAATACGGTGGGCATGTGGTCT--------------------------------------------------- | 23 | - | - | 1 | |
| ------------------------------------------------------------------------CAGGAGTAATGGGAAAAGGG-- | 20 | 1 | - | - | |
| ------------------------------------------------------CAATCTCTCTCTTCACCCCA-------------------- | 20 | - | - | 1 | |
| -------------------------------------------------AGTCTCAATCTCTCTCTTCACCCCA-------------------- | 25 | - | - | 1 | |
| ------------------------------------------TAGGAAAAGTCTCAATCTC--------------------------------- | 19 | - | - | 1 | |
| ------------------------------------------------------CAATCTCTCTCTTCACCCC--------------------- | 19 | - | - | 1 | |
| -----------------TCTTCAATACGGTGGGCATGTG------------------------------------------------------- | 22 | - | - | 1 | |
| rat | gtGTCCTTTCTCCCTCATCTTCAATACGGTGGGCATGTGGTCTAGGAAAAGTCTCAATCTCTCTCTTCACCCCAGGAGTAATGGGAAAAGGGca | ||||
| ********************************************************************************************** | |||||
| rat | .((((((((.((((....((((.....((((((.....(((..(((.....)))..)))......))))))...))))....)))))))))))) | 0.910 -25.50 | |||
| rat | chromosome:4:164247521:164247614:1 | intergenic |
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