other hairpins
novel_lenNOK_gcHIGH_loopOverlap_randfoldOK (3 loci)
block1634219 [novel_lenNOK_gcHIGH_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.94/0.95 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 16 11 | -4 0 | 3arm_loop 3arm | 1 1 | nd nd | 0.22 0.11 | 3 1 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------GGGGGGG---------------------- | 1 | novel |
| seed | -----------------------------CGGUGGG-------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T2S2 | |||
| ----------------------------CCGGTGGGGGGGCGGGGG---------------- | 18 | 1 | |
| --------------------------------TGGGGGGGCGGGGGCCCCC----------- | 19 | 1 | |
| rat | gggaaggcgggggccgccgcgccctccgCCGGTGGGGGGGCGGGGGCCCCCnccaacgcccc | ||
| ************************************************************** | |||
| rat | (((..((.(((((((.((((.(((((((....))))))))))).))))))).))....))). | 1.000 -48.70 |
| rat | chromosome:4:42382871:42382932:1 | intergenic ## {Repeats: GC_rich 23 46 1 class=Low_complexity,dust 42382904 42382916 0 class=dust} |
block2176898 [novel_lenNOK_gcHIGH_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.94/0.94 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 30 | -1 | 5arm_loop | 2 | nd | 0.28 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------GGCGGGG--------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T4S2 | |||
| ------------------------------CGGCGGGGAGGGGGCGGG----------------------------------------------------- | 18 | 1 | |
| rat | ggtggcttgctatgaggagaactccacttcCGGCGGGGAGGGGGCGGGaccccagcccgctcacgccggaagtggttagggttctcaagatggcgactccc | ||
| ***************************************************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000048099 ENSRNOG00000030821 LOC691779 | ||
| ..............................................................................................>>>>>>>>>>>>>>>>> | ENSRNOT00000049352 ENSRNOG00000030821 LOC691779 | ||
| rat | ((.((.(((((((...(((((((((((((((((((..(((.((((((....)).)))).))).))))))))))))....)))))))...))))))))).)) | 1.000 -62.20 |
| rat | chromosome:7:2049023:2049123:1 | Same_strand|Intronic_coding|ENSRNOT00000048099|ENSRNOG00000030821 ## Same_strand|Boundary_non-coding|ENSRNOT00000049352|ENSRNOG00000030821 ## ENSRNOG00000030821|protein_coding|LOC691779|within bgcn homolog [Source:RefSeq_peptide;Acc:NP_001102456] |
novel_lenNOK_gcHIGH_multiarm (3 loci)
sblock11134 [novel_lenNOK_gcHIGH_multiarm]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.686 | no | no | 0.94/1.00 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 10 34 | 31 1 | 5arm 3arm | 1 1 | nd nd | 0.11 0.39 | 2 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------CGGCGGG------------------------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ---------------------------------------------------------------------GCGCGCC-------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S1 | |||
| ----------CCGGCGGGGGAGGGGGCC-------------------------------------------------------------------------------------------- | 18 | - | 1 | |
| --------------------------------------------------------------------GGCGCGCCCCCGCCCCCC---------------------------------- | 18 | 1 | - | |
| rat | tgtgcagaccCCGGCGGGGGAGGGGGCCcaagcaagtaaggccgagcagagggcgcccgagagcgcgcGGCGCGCCCCCGCCCCCCgtctggctgccccctgcttccccgcgcggcgcgc | |||
| ************************************************************************************************************************ | ||||
| ---------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000060699 ENSRNOG00000015434 Midn_predicted | |||
| ---------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000060698 ENSRNOG00000015434 Midn_predicted | |||
| ---------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000021166 ENSRNOG00000015434 Midn_predicted | |||
| rat | .((((.....(((((((((((((((((...(((.((...((....((...(((((((((........))).))))))..))...))..)).))))))))))...))))))).))).)))) | 0.970 -60.90 | ||
| rat | chromosome:7:11067928:11068047:1 | Opposite_strand|Intronic_coding|ENSRNOT00000060698|ENSRNOG00000015434 ## ENSRNOG00000015434|protein_coding|Midn_predicted| ## {Repeats: dust 11068007 11068025 0 class=dust,GC_rich 6 24 1 class=Low_complexity,GC_rich 1 25 1 class=Low_complexity} ## {SimpF: oe = 0.84 1 CpG} |
sblock2253 [novel_lenNOK_gcHIGH_multiarm]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.325 | no | no | 0.81/0.94 | 18/21/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 10 30 | 17 0 | 5arm 3arm | 1 1 | nd nd | 0.29 0.22 | 3 2 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------GGCCGGC---------------------------------------------------------------------------------- | 1 | novel |
| seed | -----------------------------------------------------CCGGCGG---------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T2S2 | |||
| ----------AGGCCGGCGGGCAGGCTCCTG--------------------------------------------------------------------- | 21 | 1 | |
| ----------------------------------------------------GCCGGCGGCGGCGGGGAG------------------------------ | 18 | 1 | |
| rat | accccgcggcAGGCCGGCGGGCAGGCTCCTGcgtcccttccgtccggcccttGCCGGCGGCGGCGGGGAGgcgcgcggcccgctgccggcccatggaggc | ||
| **************************************************************************************************** | |||
| .................................................................................................>>>>>>>>>>>>> | ENSRNOT00000036203 ENSRNOG00000025060 Nanos1_predicted | ||
| rat | .(((((.(((.((.((((((((..((...(((.(((((.(((((((((....)))))..)))).))))).))).)).)))))))))).)))..))).)). | 1.000 -61.40 |
| rat | chromosome:1:267364577:267364676:1 | intergenic ## {Repeats: GC_rich 1 18 1 class=Low_complexity,GC_rich 1 40 1 class=Low_complexity} ## {SimpF: 1 Eponine,oe = 0.83 1 CpG} |
sblock9833 [novel_lenNOK_gcHIGH_multiarm]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.032 | no | no | 0.89/0.94 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 28 11 | 8 34 | 5arm 3arm | 1 1 | nd nd | 0.22 0.33 | 2 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------CCGCGCC------------------------------------------------------------------------------------ | 1 | novel | |
| seed | --------------------------------------------------------------------------------------------GAGCGGC--------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T2S1 | |||
| ----------------------------CCCGCGCCCCGGGAACCG-------------------------------------------------------------------------- | 18 | 1 | - | |
| -------------------------------------------------------------------------------------------GGAGCGGCCCGGCCGCGG----------- | 18 | - | 1 | |
| rat | agccacgtagcccggcccgccaccccttCCCGCGCCCCGGGAACCGcggaatgcgtggcagccccggccgggggctattttgagcgggaggGGAGCGGCCCGGCCGCGGtgttttcggct | |||
| ************************************************************************************************************************ | ||||
| ---------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000056194 ENSRNOG00000037205 | |||
| rat | ((((.....((((((((.(((..(((((((((((((((.((..(((.((..(((...)))..))))))).)))))........))))))))))...)))..))))).)))......)))) | 0.980 -67.50 | ||
| rat | chromosome:5:152073260:152073379:1 | Opposite_strand|Intronic_coding|ENSRNOT00000056194|ENSRNOG00000037205 ## ENSRNOG00000037205|protein_coding|| ## {SimpF: 1 Eponine,oe = 0.93 1 CpG, -1 Eponine} |
novel_lenNOK_gcHIGH_multiarm_loopOverlap (3 loci)
block855651 [novel_lenNOK_gcHIGH_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.160 | no | no | 0.76/0.94 | 18/21/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 14 17 | 0 -6 | 5arm 5arm_loop_3arm | 1 1 | nd nd | 0.28 0.29 | 2 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------GGCGCGC-------------------------------------------------- | 1 | novel | |
| seed | ------------------GCGCGGU----------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T2S1 | |||
| --------------CGGCGCGCGGTCGGGCGG---------------------------------------- | 18 | - | 1 | |
| -----------------CGCGCGGTCGGGCGGTTGTTC---------------------------------- | 21 | 1 | - | |
| rat | gctctttctgcgagCGGCGCGCGGTCGGGCGGTTGTTCgcaattcttgcggcgcgagtctcagcagcaaggg | |||
| ************************************************************************ | ||||
| rat | .(((((.(((((((...(((((.((.((((((....))))....)).)).)))))...))).)))).))))) | 0.820 -30.60 | ||
| rat | chromosome:1:72899027:72899098:-1 | intergenic ## {SimpF: oe = 0.82 -1 CpG} |
sblock12673 [novel_lenNOK_gcHIGH_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.495 | no | no | 0.78/0.94 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 46 1 | -4 31 | 5arm_loop 3arm | 1 1 | nd nd | 0.50 0.22 | 5 1 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------------------------------------------CGACGCG----------- | 1 | novel | |
| seed | -----------------------------------------------UCCCGAG------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T2S2 | |||
| ----------------------------------------------CTCCCGAGGCCTCCGGGA-------------------------------------------------------- | 18 | - | 1 | |
| -----------------------------------------------------------------------------------------------------GCGACGCGGCCCGGCGCG- | 18 | 1 | - | |
| rat | cgctcattggccggcccggaagacagcgcccccccctttgccacgcCTCCCGAGGCCTCCGGGAatgtagggaggggcggggcctgagtcggaggggcgggGCGACGCGGCCCGGCGCGa | |||
| ************************************************************************************************************************ | ||||
| rat | (((......(((((((((........((((((((((((((.((.(((((((....(((((..........))))))).))))).))...)))))))).)))))).)).)))).)))))). | 0.910 -60.90 | ||
| rat | chromosome:X:72493349:72493468:-1 | intergenic |
sblock3578 [novel_lenNOK_gcHIGH_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.254 | no | no | 0.79/1.00 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 6 9 | 4 -4 | 5arm 3arm_loop | 2 2 | nd nd | 0.33 0.21 | 3 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------CGAGCCC-------------------- | 1 | novel |
| seed | -------CGCCCGG------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T2S2 | |||
| ----------------------------ACGAGCCCGCGGCCCGAGT--------- | 19 | 1 | |
| ------GCGCCCGGGCGCCCGCGG-------------------------------- | 18 | 1 | |
| rat | ctgtccGCGCCCGGGCGCCCGCGGtggcACGAGCCCGCGGCCCGAGTgcgaggcgg | ||
| ******************************************************** | |||
| rat | ((((((((((.(((((...((((..(((....)))))))))))).))))).))))) | 1.000 -33.60 |
| rat | chromosome:12:35266997:35267052:1 | intergenic ## {SimpF: 1 Eponine,oe = 0.90 1 CpG} |
novel_lenNOK_loopOverlap_mirtron_bulgeHIGH (3 loci)
block169849 [novel_lenNOK_loopOverlap_mirtron_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.043 | no | no | 0.56/0.56 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 30 | -1 | 3arm | 1 | 3 | 0.28 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------GAGGUAA---------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| -------------------------------------------------------TGAGGTAAAAGGGGAGGG------------------------------ | 18 | 1 | |
| rat | gtcatagctctggcctacaagaagctggaaacagactgtcccacaactaccttgaTGAGGTAAAAGGGGAGGGttttcctgaagaagatggtttggagaagac | ||
| ******************************************************************************************************* | |||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000002333 ENSRNOG00000001714 RGD1306927_predicted | ||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000002336 ENSRNOG00000001714 RGD1306927_predicted | ||
| rat | (((....((((((((...........((((...((((.((((.....((((((...))))))....)))).))))))))..........)))).))))..))) | 0.580 -28.00 |
| rat | chromosome:11:73213151:73213253:1 | Same_strand|Boundary_coding|ENSRNOT00000002336|ENSRNOG00000001714 ## ENSRNOG00000001714|protein_coding|RGD1306927_predicted| |
block1647873 [novel_lenNOK_loopOverlap_mirtron_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.016 | no | no | 0.42/0.50 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 17 12 | -4 2 | 3arm_loop 3arm | 1 1 | 6 1 | 0.37 0.22 | 4 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------------CACAACC---------------------------- | 1 | novel | |
| seed | -----------------------------------------------CUGCUAA---------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T5S2 | |||
| ----------------------------------------------CCTGCTAATTGTCTCCCA------------ | 18 | 1 | - | |
| ----------------------------------------TCACAACCTGCTAATTGTC----------------- | 19 | - | 1 | |
| rat | ctggatgaatcctggaagagacttgggtactctggttcctTCACAACCTGCTAATTGTCTCCCAggacactctgga | |||
| **************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>> | ENSRNOT00000023537 ENSRNOG00000017354 Zyx | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>> | ENSRNOT00000046501 ENSRNOG00000017354 Zyx | |||
| rat | (((((((..((((((..(((((...((((....((((.......))))))))....))))))))))))).))))). | 1.000 -23.50 | ||
| rat | chromosome:4:70125768:70125843:1 | Same_strand|Intronic_coding|ENSRNOT00000023537|ENSRNOG00000017354 ## Same_strand|Boundary_non-coding|ENSRNOT00000045777|ENSRNOG00000017354 ## ENSRNOG00000017354|protein_coding|Zyx|Zyxin (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q99MM3] |
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