other hairpins
novel_lenNOK_multiarm_DicerNOK_Multihit_randfoldOK_nonpairedHIGH_bulgeHIGH (3 loci)
novel_lenNOK_multiarm_DicerNOK_Multihit_shortStem_randfoldOK (3 loci)
sblock1372 [novel_lenNOK_multiarm_DicerNOK_Multihit_shortStem_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.40/0.43 | 19/21/0.50 | 0.0 0.0 | 0.5 0.0 | 2 2 | 0 0 | 1 1 | 0 0 | 0 3 | 4 1 | 5arm 3arm | 17 20 | nd nd | 0.19 0.11 | 1 1 | 4 | 1 | -3 | -3 |
| reads | miRBase family seed | ||
| seed | -----------------------------------AUCACAU-------------- | 2 | novel |
| seed | -GAUGUUG------------------------------------------------ | 2 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----------------------------------TATCACATGAAGCCCACTA--- | 19 | 2 | |
| TGATGTTGGACTTTCACTGT------------------------------------ | 20 | 1 | |
| TGATGTTGGACTTTCACTGTG----------------------------------- | 21 | 1 | |
| rat | TGATGTTGGACTTTCACTGTGgtagcaccccaacTATCACATGAAGCCCACTAttg | ||
| ******************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000049496 ENSRNOG00000031160 LOC685793 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000042408 ENSRNOG00000031160 LOC685793 | ||
| ------------------------------------------------------------------ | ENSRNOT00000059958 ENSRNOG00000030545 LOC685793 | ||
| ------------------------------------------------------------------ | ENSRNOT00000049483 ENSRNOG00000030545 LOC685793 | ||
| ------------------------------------------------------------------ | ENSRNOT00000039913 ENSRNOG00000030545 LOC685793 | ||
| rat | .((((.(((.((.(((.((((((((........))))))))))))).))).)))). | 1.000 -16.30 |
| rat | chromosome:1:50084513:50084568:1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000039913|ENSRNOG00000030545 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000059959|ENSRNOG00000030545 ## Same_strand|Boundary_non-coding|ENSRNOT00000050327|ENSRNOG00000031160 ## Same_strand|Intronic_non-coding|ENSRNOT00000042408|ENSRNOG00000031160 ## Opposite_strand|Intronic_coding|ENSRNOT00000059958|ENSRNOG00000030545 ## ENSRNOG00000030545|protein_coding|LOC685793| ## ENSRNOG00000031160|protein_coding|LOC685793| |
sblock248 [novel_lenNOK_multiarm_DicerNOK_Multihit_shortStem_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.40/0.43 | 19/21/0.50 | 0.0 0.0 | 0.5 0.0 | 2 2 | 0 0 | 1 1 | 0 0 | 0 3 | 4 1 | 5arm 3arm | 17 20 | nd nd | 0.19 0.11 | 1 1 | 4 | 1 | -3 | -3 |
| reads | miRBase family seed | ||
| seed | -----------------------------------AUCACAU-------------- | 2 | novel |
| seed | -GAUGUUG------------------------------------------------ | 2 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----------------------------------TATCACATGAAGCCCACTA--- | 19 | 2 | |
| TGATGTTGGACTTTCACTGT------------------------------------ | 20 | 1 | |
| TGATGTTGGACTTTCACTGTG----------------------------------- | 21 | 1 | |
| rat | TGATGTTGGACTTTCACTGTGgtagcaccccaacTATCACATGAAGCCCACTAttg | ||
| ******************************************************** | |||
| ------------------------------------------------------------------ | ENSRNOT00000049496 ENSRNOG00000031160 LOC685793 | ||
| ------------------------------------------------------------------ | ENSRNOT00000042408 ENSRNOG00000031160 LOC685793 | ||
| ------------------------------------------------------------------ | ENSRNOT00000050327 ENSRNOG00000031160 LOC685793 | ||
| ------------------------------------------------------------------ | ENSRNOT00000040838 ENSRNOG00000031160 LOC685793 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000059958 ENSRNOG00000030545 LOC685793 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000049483 ENSRNOG00000030545 LOC685793 | ||
| rat | .((((.(((.((.(((.((((((((........))))))))))))).))).)))). | 1.000 -16.30 |
| rat | chromosome:1:50131005:50131060:-1 | Same_strand|Intronic_non-coding|ENSRNOT00000049483|ENSRNOG00000030545 ## Same_strand|Intronic_coding|ENSRNOT00000059958|ENSRNOG00000030545 ## Same_strand|Boundary_non-coding|ENSRNOT00000039913|ENSRNOG00000030545 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000041575|ENSRNOG00000031160 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000042408|ENSRNOG00000031160 ## ENSRNOG00000030545|protein_coding|LOC685793| ## ENSRNOG00000031160|protein_coding|LOC685793| |
sblock281 [novel_lenNOK_multiarm_DicerNOK_Multihit_shortStem_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.50/0.67 | 18/24/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 0 | 8 2 | 5arm 3arm | 19 19 | nd nd | 0.17 0.22 | 2 2 | 2 | 2 | -5 | -1 |
| reads | miRBase family seed | |||
| seed | ---------------------------------GGGAACU---------------- | 1 | novel | |
| seed | -GCCUGAG------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| --------------------------------TGGGAACTGCGTCTAGCCTTAGTT | 24 | 1 | - | |
| GGCCTGAGGGGGATCAGT-------------------------------------- | 18 | - | 1 | |
| rat | GGCCTGAGGGGGATCAGTtgctcaaagggattTGGGAACTGCGTCTAGCCTTAGTT | |||
| ******************************************************** | ||||
| ------------------------------------------------------------------ | ENSRNOT00000041575 ENSRNOG00000031160 LOC685793 | |||
| rat | ...((((((.(((((((((.((((((....))))))))))).))))..)))))).. | 1.000 -21.60 | ||
| rat | chromosome:1:50283478:50283533:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000049496|ENSRNOG00000031160 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000041575|ENSRNOG00000031160 ## ENSRNOG00000031160|protein_coding|LOC685793| |
novel_lenNOK_multiarm_DicerNOK_mirtron_nonpairedHIGH (3 loci)
sblock4493 [novel_lenNOK_multiarm_DicerNOK_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.366 | no | no | 0.60/0.72 | 18/20/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 8 0 | 17 23 | 5arm 3arm | 1 1 | 64 2 | 0.39 0.32 | 3 3 | 2 | 2 | 7 | 8 |
| reads | miRBase family seed | |||
| seed | ---------GUUUGGG---------------------------------------------------------------------------- | 1 | novel | |
| seed | -------------------------------------------------------------------------GUACCCU------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S1 | |||
| --------GGTTTGGGCCCCTTGGGC------------------------------------------------------------------ | 18 | 1 | - | |
| ------------------------------------------------------------------------GGTACCCTCCCTTGCTAGTC | 20 | - | 1 | |
| rat | ggcgggcgGGTTTGGGCCCCTTGGGCagggcccctcccctggccccgacgccgcttccgggcctcgtcttcgGGTACCCTCCCTTGCTAGTC | |||
| ******************************************************************************************** | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>> | ENSRNOT00000034153 ENSRNOG00000012014 Rai16_predicted | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000058475 ENSRNOG00000012014 Rai16_predicted | |||
| rat | (((.((((((...(((.(((..((((..(((((......((((......)))).....)))))..))))..)))..)))...)))))).))) | 0.820 -40.90 | ||
| rat | chromosome:15:51000413:51000504:-1 | Same_strand|Intronic_non-coding|ENSRNOT00000034153|ENSRNOG00000012014 ## Same_strand|Boundary_non-coding|ENSRNOT00000034153|ENSRNOG00000012014 ## Same_strand|Intronic_coding|ENSRNOT00000058475|ENSRNOG00000012014 ## ENSRNOG00000012014|protein_coding|Rai16_predicted| |
sblock6149 [novel_lenNOK_multiarm_DicerNOK_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.334 | no | no | 0.53/0.65 | 19/23/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 10 13 | 16 10 | 5arm 3arm | 1 1 | 1 0 | 0.32 0.35 | 3 3 | 2 | 2 | -5 | 0 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------UGACCCU---------------------------- | 1 | novel | |
| seed | -----------UGAGUCA---------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S2 | T5S1 | |||
| ----------------------------------------------------------CTGACCCTTGCCCCTGTCCTCAG------------- | 23 | - | 1 | |
| ----------GTGAGTCACAAGGGAATGG----------------------------------------------------------------- | 19 | 1 | - | |
| rat | gtgaaaccagGTGAGTCACAAGGGAATGGgatccgatgggaacagtgcctggacctggCTGACCCTTGCCCCTGTCCTCAGgttcctgcacaca | |||
| ********************************************************************************************** | ||||
| >>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>> | ENSRNOT00000033917 ENSRNOG00000020395 Rusc1 | |||
| >>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>> | ENSRNOT00000045787 ENSRNOG00000020395 Rusc1 | |||
| >>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>> | ENSRNOT00000027648 ENSRNOG00000020395 Rusc1 | |||
| rat | (((....((((((((..(((.(((...(((.((...((((..(((...)))..))))...)))))...))).))).))))....))))..))). | 0.700 -29.80 | ||
| rat | chromosome:2:181162822:181162915:-1 | Same_strand|Intronic_coding|ENSRNOT00000045787|ENSRNOG00000020395 ## Same_strand|Boundary_coding|ENSRNOT00000027648|ENSRNOG00000020395 ## ENSRNOG00000020395|protein_coding|Rusc1|RUN and SH3 domain containing 1 Gene [Source:MGI Symbol;Acc:MGI:1919546] |
sblock809 [novel_lenNOK_multiarm_DicerNOK_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.284 | no | no | 0.56/0.67 | 18/25/0.33 | 0.0 0.0 | 0.0 1.5 | 1 2 | 0 0 | 1 2 | 0 0 | 19 17 | 15 18 | 5arm 3arm | 1 1 | 65 1 | 0.33 0.45 | 2 4 | 3 | 3 | 2 | 8 |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------------------------------------------CACACGA---------------------------------- | 2 | novel | ||
| seed | --------------------UGGGGGA--------------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S1 | T5S1 | T5S2 | |||
| ------------------------------------------------------------------------------CCACACGACTGCTCCTTTCCTC-------------------- | 22 | 1 | - | - | |
| -------------------TTGGGGGAGATGGGGGTG----------------------------------------------------------------------------------- | 18 | - | 1 | - | |
| ------------------------------------------------------------------------------CCACACGACTGCTCCTTTCCTCAGT----------------- | 25 | - | - | 1 | |
| rat | ctcaactgccttttggagtTTGGGGGAGATGGGGGTGaggtgaggcagagctgtgacaagggctacatgtttctctggCCACACGACTGCTCCTTTCCTCAGTactggcggcgccttgag | ||||
| ************************************************************************************************************************ | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000019053 ENSRNOG00000013641 Myo7a | ||||
| rat | ((((((((((.....(((...((((.((.((..(((.(((.((((((.((((........))))...))))))))).)))...)).)).))))....)))......)))))....))))) | 0.960 -41.60 | |||
| rat | chromosome:1:155319058:155319177:-1 | Same_strand|Intronic_coding|ENSRNOT00000019053|ENSRNOG00000013641 ## Same_strand|Boundary_coding|ENSRNOT00000019053|ENSRNOG00000013641 ## ENSRNOG00000013641|protein_coding|Myo7a|myosin VIIA [Source:RefSeq_peptide;Acc:NP_703203] |
novel_lenNOK_multiarm_DicerNOK_shortStem_5varHIGH_randfoldOK (3 loci)
sblock6723 [novel_lenNOK_multiarm_DicerNOK_shortStem_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.42/0.56 | 19/25/0.33 | 0.0 5.0 | 0.5 4.2 | 2 4 | 0 0 | 1 3 | 0 0 | 0 0 | 23 20 | 5arm 3arm | 1 1 | nd nd | 0.20 0.24 | 3 3 | 6 | 3 | -7 | -10 |
| reads | miRBase family seed | ||||
| seed | -UGAGGAG------------------------------------------------------------------------------------------------------ | 2 | novel | ||
| seed | -----------------------------------------------------------------------------------------CUCAAGA-------------- | 1 | novel | ||
| seed | ------------------------------------------------------------------------------AAAACCC------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------------------------------------ACCCUUU---------------------- | 1 | novel | ||
| seed | ------------------------------------------------------------------------------------CUUUUCU------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S2 | T5S1 | |||
| TTGAGGAGCTGGGCTTTGGGAAGTG------------------------------------------------------------------------------------- | 25 | - | - | 1 | |
| -----------------------------------------------------------------------------------CCTTTTCTCAAGACAGCCCAGCACT-- | 25 | - | - | 1 | |
| ----------------------------------------------------------------------------------------TCTCAAGACAGCCCAGCACTGA | 22 | - | - | 1 | |
| -----------------------------------------------------------------------------GAAAACCCTTTTCTCAAGACAGCCC-------- | 25 | - | 1 | - | |
| TTGAGGAGCTGGGCTTTGGGAAGT-------------------------------------------------------------------------------------- | 24 | - | - | 1 | |
| --------------------------------------------------------------------------------AACCCTTTTCTCAAGACAG----------- | 19 | 1 | - | - | |
| rat | TTGAGGAGCTGGGCTTTGGGAAGTGggaatgagggagagagaagggagtgacgagacctccctggtgctttgagaaaGAAAACCCTTTTCTCAAGACAGCCCAGCACTGA | ||||
| ************************************************************************************************************** | |||||
| rat | ....((.((((((((((((((((.(((..........((((.((((((.........))))))....))))...........))).))))))))...)))))))).)).. | 0.570 -39.20 | |||
| rat | chromosome:20:5513916:5514025:-1 | intergenic |
sblock711 [novel_lenNOK_multiarm_DicerNOK_shortStem_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.25/0.47 | 19/24/0.67 | 0.0 0.0 7.8 | 0.0 0.0 8.8 | 1 1 4 | 0 0 0 | 1 1 1 | 0 0 0 | 36 26 0 | -18 -5 4 | 5arm_loop 3arm_loop 3arm | 1 2 2 | nd nd nd | 1.00 0.42 0.25 | 19 4 2 | 6 | 2 | 0 | 13 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------------------------GCUAUGU--------------- | 2 | novel | |
| seed | -------------------------------------------------------AACUGUU------------------------------------- | 1 | novel | |
| seed | -------------------------------------CCAAACA------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------------------------------------GCCUUCU---------------------------- | 1 | novel | |
| seed | ---------------------------------------------------------------------CUUUAUA----------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ---------------------------------------------------------------TGCCTTCTTTATATGCTATGT--------------- | 21 | - | 1 | |
| --------------------------------------------------------------------TCTTTATATGCTATGTATTCATTG------- | 24 | - | 1 | |
| ----------------------------------------------------------------------------TGCTATGTATTCATTGTCCA--- | 20 | - | 1 | |
| ------------------------------------------------------TAACTGTTTTGCCTTCTTT-------------------------- | 19 | - | 1 | |
| ------------------------------------CCCAAACACCACTGAGATT-------------------------------------------- | 19 | 1 | - | |
| ----------------------------------------------------------------------------TGCTATGTATTCATTGTCCAAAA | 23 | - | 1 | |
| rat | aggaggatgaaggcacagcatcagagggaaaagaagCCCAAACACCACTGAGATTAACTGTTTTGCCTTCTTTATATGCTATGTATTCATTGTCCAAAA | |||
| *************************************************************************************************** | ||||
| rat | .(((.((((((.(((.(((((.((((((....(((((......................))))).))))))....))))).))).)))))).))).... | 0.970 -28.45 | ||
| rat | chromosome:1:128999527:128999625:-1 | intergenic |
sblock7631 [novel_lenNOK_multiarm_DicerNOK_shortStem_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.32/0.47 | 19/24/0.62 | 0.0 3.7 | 0.0 2.9 | 5 7 | 0 0 | 1 1 | 0 0 | 2 2 | 31 26 | 5arm 3arm | 2 2 | nd nd | 0.18 0.21 | 3 3 | 13 | 1 | 0 | -2 |
| reads | miRBase family seed | ||
| seed | ---GGCACAA----------------------------------------------------------------------------------------------------------- | 5 | novel |
| seed | -------------------------------------------------------------------------------------------------UGGAUUC------------- | 3 | novel |
| seed | -----------------------------------------------------------------------------------------GUCUUUU--------------------- | 1 | novel |
| seed | -GUGGCAC------------------------------------------------------------------------------------------------------------- | 1 | novel |
| seed | -------------------------------------------------------------------------------------------CUUUUGU------------------- | 1 | novel |
| seed | --------------------------------------------------------------------------------------GUUGUCU------------------------ | 1 | novel |
| seed | ------------------------------------------------------------------------------------------------GUGGAUU-------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --TGGCACAAAGTATTCTGTCTGA--------------------------------------------------------------------------------------------- | 22 | 5 | |
| ------------------------------------------------------------------------------------------------GTGGATTCTATGCTTGTGC-- | 19 | 3 | |
| -----------------------------------------------------------------------------------------------TGTGGATTCTATGCTTGTG--- | 19 | 1 | |
| TGTGGCACAAAGTATTCTGTCTGA--------------------------------------------------------------------------------------------- | 24 | 1 | |
| ----------------------------------------------------------------------------------------TGTCTTTTGTGGATTCTAT---------- | 19 | 1 | |
| ------------------------------------------------------------------------------------------TCTTTTGTGGATTCTATGCTTGTG--- | 24 | 1 | |
| -------------------------------------------------------------------------------------TGTTGTCTTTTGTGGATTCT------------ | 20 | 1 | |
| rat | tgTGGCACAAAGTATTCTGTCTGAttcacccccttgaactggcaccagaggtgctcctgagcatctctttcccttcaggatgggctgttgtcttttGTGGATTCTATGCTTGTGCtc | ||
| ********************************************************************************************************************* | |||
| rat | ...(((((.((((((...(((((((.(((((.((((((..((....(((((((((....)))))))))..)).))))))..))).))..)))......))))...))))))))))). | 0.920 -38.60 |
| rat | chromosome:3:140478268:140478384:-1 | intergenic |
novel_lenNOK_multiarm_DicerNOK_shortStem_loopOverlap_nonpairedHIGH (3 loci)
sblock11577 [novel_lenNOK_multiarm_DicerNOK_shortStem_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.376 | no | no | 0.56/0.67 | 18/20/0.50 | 0.0 0.0 | 1.2 0.0 | 5 1 | 0 0 | 4 1 | 0 0 | 0 1 | -4 -2 | 5arm_loop_3arm 3arm_loop | 1 1 | nd nd | 0.39 0.39 | 3 2 | 6 | 4 | 0 | -1 |
| reads | miRBase family seed | |||||
| seed | -GGGAACC----------------------------- | 5 | novel | |||
| seed | -------------------ACUCAGG----------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T3S1 | T4S2 | T5S2 | |||
| TGGGAACCGGGGTGGGATGA----------------- | 20 | 1 | 1 | - | 1 | |
| TGGGAACCGGGGTGGGAT------------------- | 18 | 1 | - | 1 | - | |
| ------------------GACTCAGGCTGAATCACC- | 18 | - | - | 1 | - | |
| rat | TGGGAACCGGGGTGGGATGACTCAGGCTGAATCACCa | |||||
| ************************************* | ||||||
| ----------------------------------------------- | ENSRNOT00000008614 ENSRNOG00000006403 Pvrl1 | |||||
| rat | .((((..(((..((((....))))..)))..)).)). | 0.990 -8.70 | ||||
| rat | chromosome:8:46787255:46787291:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000008614|ENSRNOG00000006403 ## ENSRNOG00000006403|protein_coding|Pvrl1|Nectin-1 (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q9WTY6] |
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