other hairpins
novel_lenNOK_multiarm_DicerNOK_shortStem_loopOverlap_nonpairedHIGH (3 loci)
sblock689 [novel_lenNOK_multiarm_DicerNOK_shortStem_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.770 | no | no | 0.44/0.52 | 21/25/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 2 | 1 -4 | 5arm 3arm_loop | 1 1 | nd nd | 0.44 0.38 | 5 3 | 2 | 2 | 0 | -8 |
| reads | miRBase family seed | |||
| seed | -UCAAAGA----------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------CCCGCCA--------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S2 | T5S2 | |||
| --------------------------------------------ACCCGCCAAACTAAAGGAGAG-- | 21 | - | 1 | |
| ATCAAAGACACATCTTTTCAGGGGG------------------------------------------ | 25 | 1 | - | |
| rat | ATCAAAGACACATCTTTTCAGGGGGccaacaaagcgtttatttcACCCGCCAAACTAAAGGAGAGtt | |||
| ******************************************************************* | ||||
| rat | ......(((...((((((.((..(((......................)))...))))))))..))) | 0.920 -8.05 | ||
| rat | chromosome:1:125293071:125293137:-1 | intergenic |
sblock9156 [novel_lenNOK_multiarm_DicerNOK_shortStem_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.028 | no | no | 0.30/0.44 | 18/26/0.17 | 0.5 0.0 0.0 | 0.0 0.0 0.0 | 4 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 4 24 16 | -2 -16 -4 | 5arm_loop 5arm_loop_3arm 3arm_loop | 1 1 1 | nd nd nd | 0.31 0.60 0.44 | 3 6 4 | 6 | 1 | 0 | -13 |
| reads | miRBase family seed | ||
| seed | ------CACAAGA--------------------------------------------------- | 2 | novel |
| seed | -----UCACAAG---------------------------------------------------- | 2 | novel |
| seed | -------------------------------AAAUGAC-------------------------- | 1 | novel |
| seed | -------------------------ACAGAUA-------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -----TCACAAGACACACTGACCAAACAGA---------------------------------- | 25 | 2 | |
| ----TTCACAAGACACACTGACCAAACAGA---------------------------------- | 26 | 2 | |
| ------------------------AACAGATAAATGACAGTTGA-------------------- | 20 | 1 | |
| ------------------------------TAAATGACAGTTGATCAG---------------- | 18 | 1 | |
| rat | cttcTTCACAAGACACACTGACCAAACAGATAAATGACAGTTGATCAGtgtgctctggggcagc | ||
| **************************************************************** | |||
| rat | ((.(((((..((.((((((((.(((.((......))....))).)))))))))).))))).)). | 1.000 -17.60 |
| rat | chromosome:4:164285187:164285250:1 | intergenic |
novel_lenNOK_multiarm_DicerNOK_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH (3 loci)
sblock4795 [novel_lenNOK_multiarm_DicerNOK_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.027 | no | no | 0.60/0.83 | 18/20/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 0 | -2 3 | 5arm_loop 3arm | 1 1 | nd nd | 0.50 0.65 | 4 6 | 2 | 2 | 5 | 0 |
| reads | miRBase family seed | |||
| seed | ----------------------------------AGCGCGG---------- | 1 | novel | |
| seed | -AAGCCAC------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S1 | |||
| ---------------------------------GAGCGCGGCGGCACCGAC | 18 | - | 1 | |
| AAAGCCACCGAAAGCGGCGA------------------------------- | 20 | 1 | - | |
| rat | AAAGCCACCGAAAGCGGCGAccgtatcaaagccGAGCGCGGCGGCACCGAC | |||
| *************************************************** | ||||
| rat | ...(((.(((....((((............))))....))).)))...... | 1.000 -19.20 | ||
| rat | chromosome:16:70272614:70272664:-1 | intergenic |
sblock7529 [novel_lenNOK_multiarm_DicerNOK_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.015 | no | no | 0.50/0.50 | 18/20/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 4 0 | -1 9 | 5arm_loop 3arm | 1 1 | nd nd | 0.40 0.35 | 5 4 | 2 | 2 | 10 | 4 |
| reads | miRBase family seed | |||
| seed | -----CCAGAAA--------------------------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------------------------------------------CUUUGUG---------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T2S1 | |||
| ----ACCAGAAAGTCCGTGGAGAT--------------------------------------------------------------- | 20 | - | 1 | |
| ---------------------------------------------------------------------TCTTTGTGGCGAGCTCTT | 18 | 1 | - | |
| rat | gctcACCAGAAAGTCCGTGGAGATtccagcaacagttttagccttcccccacttttcccttctcccctgTCTTTGTGGCGAGCTCTT | |||
| *************************************************************************************** | ||||
| rat | ((((.(((.((((.....(((((.....................................))))).....)))).))).)))).... | 0.970 -20.79 | ||
| rat | chromosome:3:75554690:75554776:-1 | intergenic |
sblock7563 [novel_lenNOK_multiarm_DicerNOK_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.081 | no | no | 0.28/0.44 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 0 | 15 -3 | 5arm 3arm_loop | 1 1 | nd nd | 0.89 0.35 | 16 4 | 2 | 2 | 0 | 0 |
| reads | miRBase family seed | |||
| seed | -GAACCAC---------------------------------------------------- | 1 | novel | |
| seed | -------------------------------------------AAGUUAG---------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| TGAACCACAAAAAAAAGT------------------------------------------ | 18 | 1 | - | |
| ------------------------------------------TAAGTTAGCCACAGGTCA | 18 | - | 1 | |
| rat | TGAACCACAAAAAAAAGTgacattcaggttaatgaataacatTAAGTTAGCCACAGGTCA | |||
| ************************************************************ | ||||
| rat | .................((((.....(((((((............)))))))....)))) | 0.490 -8.70 | ||
| rat | chromosome:3:96308736:96308795:-1 | intergenic ## {Repeats: dust 96308780 96308787 0 class=dust} |
novel_lenNOK_multiarm_DicerOK_loopOverlap_nonpairedHIGH (3 loci)
sblock11759 [novel_lenNOK_multiarm_DicerOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.013 | no | no | 0.45/0.47 | 19/20/0.40 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 2 1 1 1 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 8 38 39 6 | 23 -8 -8 26 | 5arm 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 1 | nd nd nd nd | 0.32 0.60 0.50 0.32 | 2 8 7 2 | 5 | 2 | 3 | 3 |
| reads | miRBase family seed | |||
| seed | ---------GCCAAGG--------------------------------------------------------------------------------------------- | 2 | novel | |
| seed | -------------------------------------------------------------------------------------AGUUUGG----------------- | 1 | novel | |
| seed | ---------------------------------------------------GCUCAAC--------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------UCCAGUU--------------------------------------------------------------- | 1 | miR-145 | |
| len | cloning frequencies | |||
| T2S1 | T5S1 | |||
| --------TGCCAAGGCTCAGCTAAAA---------------------------------------------------------------------------------- | 19 | - | 2 | |
| --------------------------------------------------TGCTCAACTATGCCTGAACT--------------------------------------- | 20 | 1 | - | |
| ------------------------------------------------------------------------------------TAGTTTGGTGCTGACAGGT------ | 19 | - | 1 | |
| --------------------------------------GTCCAGTTCATATGCTCAAC--------------------------------------------------- | 20 | - | 1 | |
| rat | aggtttccTGCCAAGGCTCAGCTAAAAtagtcttgaggGTCCAGTTCATATGCTCAACTATGCCTGAACTttaaggcctataaaTAGTTTGGTGCTGACAGGTtacctc | |||
| ************************************************************************************************************* | ||||
| rat | ((((..((((.((..(((.(((((..((((((((((((...(((..((((........)))).)))..))))))))).)))...))))).)))..)).))))..)))). | 0.980 -32.50 | ||
| rat | chromosome:8:72057110:72057218:-1 | intergenic |
sblock12110 [novel_lenNOK_multiarm_DicerOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.576 | no | no | 0.48/0.61 | 18/21/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 38 39 | -2 -1 | 5arm_loop 3arm | 1 1 | nd nd | 0.33 0.33 | 3 3 | 2 | 1 | 1 | 2 |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------CUGUGUG---------------------------------------------------- | 1 | novel |
| seed | ---------------------------------------UCAGGGC------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T2S1 | |||
| --------------------------------------TTCAGGGCTCCACCGGAT-------------------------------------------------------------- | 18 | 1 | |
| ----------------------------------------------------------ACTGTGTGTCTGAGATGGAGA--------------------------------------- | 21 | 1 | |
| rat | ggcagaaaagatcctggcctgaccacccagccacatccTTCAGGGCTCCACCGGATtgACTGTGTGTCTGAGATGGAGAgctggctttgtgacatttaagtgcctttcagaaatgcct | ||
| ********************************************************************************************************************** | |||
| rat | ((((.....((....(((((...(((..(((((....(((((...(((((((((.....))).)))...))).)))))...)))))..))).......)).)))..)).....)))). | 0.760 -31.80 |
| rat | chromosome:8:108099171:108099288:1 | intergenic |
sblock3237 [novel_lenNOK_multiarm_DicerOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.280 | no | no | 0.47/0.56 | 18/21/0.12 | 0.0 0.0 0.0 0.5 | 0.7 0.0 0.0 1.0 | 3 1 2 2 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 14 24 23 13 | -2 -9 -8 1 | 5arm_loop 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 1 | nd nd nd nd | 0.32 0.56 0.63 0.33 | 2 8 7 4 | 8 | 1 | 3 | 2 |
| reads | miRBase family seed | ||
| seed | ---------------GGUUUGG----------------------------------------------------- | 3 | novel |
| seed | ----------------------------------CACACAG---------------------------------- | 2 | novel |
| seed | -------------------------------------------GCGCAGA------------------------- | 1 | novel |
| seed | --------------------------------------------CGCAGAA------------------------ | 1 | novel |
| seed | -------------------------UGGAGUU------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T2S1 | |||
| --------------AGGTTTGGTCATGGAGTTC------------------------------------------ | 19 | 2 | |
| ---------------------------------ACACACAGGAGCGCAGAAA----------------------- | 19 | 2 | |
| --------------AGGTTTGGTCATGGAGTTCAC---------------------------------------- | 21 | 1 | |
| ------------------------ATGGAGTTCACACACAGG--------------------------------- | 18 | 1 | |
| ------------------------------------------AGCGCAGAAAGCCAACCT--------------- | 18 | 1 | |
| -------------------------------------------GCGCAGAAAGCCAACCTAA------------- | 19 | 1 | |
| rat | aacaggctgggcagAGGTTTGGTCATGGAGTTCACACACAGGAGCGCAGAAAGCCAACCTAAggatcatgtgtgt | ||
| *************************************************************************** | |||
| rat | .(((.(((((....(((.(((((..((..((((........)))).))....)))))))).....))).)).))) | 0.620 -18.70 |
| rat | chromosome:12:17492703:17492777:-1 | intergenic |
novel_lenNOK_multiarm_Multihit_shortStem_nonpairedHIGH_bulgeHIGH (3 loci)
sblock1399 [novel_lenNOK_multiarm_Multihit_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.270 | no | no | 0.26/0.38 | 19/21/0.17 | 0.0 0.0 | 0.0 0.0 | 1 5 | 0 0 | 1 1 | 0 0 | 23 2 | 11 36 | 5arm 3arm | 19 22 | nd nd | 0.38 0.42 | 5 4 | 6 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------------------------------CAUACAG------------- | 5 | novel |
| seed | ------------------------CAGUCAU------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -----------------------------------------------------------------------------------------------TCATACAGTACTTAAAAAG-- | 19 | 5 | |
| -----------------------TCAGTCATATTGAGTCCTTGT------------------------------------------------------------------------ | 21 | 1 | |
| rat | aactctgaagtctggggtacacatcagtcatattgagtccttgttcggaagaggagaaatctagaagagggagaaaaattatggtggaggaagaaTCATACAGTACTTAAAAAGtt | ||
| ******************************************************************************************************************** | |||
| rat | ((((...(((((((.(((.....((..(((((.....(((((.(((......(((....))).))).))))).......)))))..))......)))...))).))))....)))) | 0.660 -22.10 |
| rat | chromosome:1:51028059:51028174:1 | intergenic |
sblock1591 [novel_lenNOK_multiarm_Multihit_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.404 | no | no | 0.26/0.38 | 19/21/0.17 | 0.0 0.0 | 0.0 0.0 | 1 5 | 0 0 | 1 1 | 0 0 | 23 2 | 11 36 | 5arm 3arm | 19 22 | nd nd | 0.38 0.42 | 5 4 | 6 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------------------------------CAUACAG------------- | 5 | novel |
| seed | ------------------------CAGUCAU------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -----------------------------------------------------------------------------------------------TCATACAGTACTTAAAAAG-- | 19 | 5 | |
| -----------------------TCAGTCATATTGAGTCCTTGT------------------------------------------------------------------------ | 21 | 1 | |
| rat | aactctgaagtctggggtacacatcagtcatattgagtccttgttcggaagaagagcaatctagaagagggagaaaaattatggtggaggaagaaTCATACAGTACTTAAAAAGtt | ||
| ******************************************************************************************************************** | |||
| ------------------------------------------------------------------------------------------------------------------------------ | ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted | ||
| rat | ((((...(((((((.(((.....((..(((((.....(((((.(((......(((....))).))).))))).......)))))..))......)))...))).))))....)))) | 0.630 -21.60 |
| rat | chromosome:1:52048906:52049021:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000048246|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
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