other hairpins
novel_lenNOK_multiarm_Multihit_shortStem_nonpairedHIGH_bulgeHIGH (3 loci)
sblock265 [novel_lenNOK_multiarm_Multihit_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.270 | no | no | 0.26/0.38 | 19/21/0.17 | 0.0 0.0 | 0.0 0.0 | 1 5 | 0 0 | 1 1 | 0 0 | 23 2 | 11 36 | 5arm 3arm | 19 22 | nd nd | 0.38 0.42 | 5 4 | 6 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------------------------------CAUACAG------------- | 5 | novel |
| seed | ------------------------CAGUCAU------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -----------------------------------------------------------------------------------------------TCATACAGTACTTAAAAAG-- | 19 | 5 | |
| -----------------------TCAGTCATATTGAGTCCTTGT------------------------------------------------------------------------ | 21 | 1 | |
| rat | aactctgaagtctggggtacacatcagtcatattgagtccttgttcggaagaggagaaatctagaagagggagaaaaattatggtggaggaagaaTCATACAGTACTTAAAAAGtt | ||
| ******************************************************************************************************************** | |||
| ------------------------------------------------------------------------------------------------------------------------------ | ENSRNOT00000041575 ENSRNOG00000031160 LOC685793 | ||
| rat | ((((...(((((((.(((.....((..(((((.....(((((.(((......(((....))).))).))))).......)))))..))......)))...))).))))....)))) | 0.660 -22.10 |
| rat | chromosome:1:50175839:50175954:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000049496|ENSRNOG00000031160 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000041575|ENSRNOG00000031160 ## ENSRNOG00000031160|protein_coding|LOC685793| |
novel_lenNOK_multiarm_shortStem (3 loci)
sblock11734 [novel_lenNOK_multiarm_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.152 | no | no | 0.50/0.61 | 18/19/0.00 | 0.0 0.0 0.0 | 0.0 0.0 0.2 | 1 1 4 | 0 0 0 | 1 1 2 | 0 0 0 | 20 41 3 | 14 -8 39 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.28 0.32 0.37 | 1 5 2 | 6 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -------------------------------------------------------------------------------------------------CCGAGAU-------------- | 4 | novel | |||
| seed | ------------------------------------------GGUUGGA--------------------------------------------------------------------- | 1 | novel | |||
| seed | ---------------------UGCUAGA------------------------------------------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T3S2 | T5S1 | |||
| ------------------------------------------------------------------------------------------------ACCGAGATCCCTGAAGGC---- | 18 | 1 | 2 | - | - | |
| ------------------------------------------------------------------------------------------------ACCGAGATCCCTGAAGGCT--- | 19 | 1 | - | - | - | |
| --------------------CTGCTAGATAGAGACGTC-------------------------------------------------------------------------------- | 18 | - | - | - | 1 | |
| -----------------------------------------AGGTTGGAGAGGCAAACTC---------------------------------------------------------- | 19 | - | - | 1 | - | |
| rat | accccgtgttagagtctctaCTGCTAGATAGAGACGTCgtaAGGTTGGAGAGGCAAACTCtgggtttacgaccttagatctcactttccggtcagtACCGAGATCCCTGAAGGCTggt | |||||
| ********************************************************************************************************************** | ||||||
| rat | (((((...((((.((((((((((((.((.((.((.(((.((((((((.((((.....)))).......))))))))))).)).)).)).)).)))))..)))))..)))).))..))) | 0.900 -35.90 | ||||
| rat | chromosome:8:63577581:63577698:-1 | intergenic |
sblock1988 [novel_lenNOK_multiarm_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.489 | no | no | 0.26/0.47 | 18/23/0.38 | 0.7 0.0 0.0 | 2.0 0.0 0.0 | 6 1 1 | 0 0 0 | 2 1 1 | 0 0 0 | 0 15 37 | 25 18 1 | 5arm 5arm 3arm | 3 3 3 | nd nd nd | 0.30 0.26 0.32 | 4 2 2 | 8 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | --GCUGCUU--------------------------------------------------------------------------------------------------------- | 4 | novel | ||
| seed | -----GCUUUUA------------------------------------------------------------------------------------------------------ | 1 | novel | ||
| seed | -UGCUGCU---------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -----------------------------------------------------------UCUUCUA------------------------------------------------ | 1 | novel | ||
| seed | ----------------CUCGAAA------------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T3S2 | T5S1 | |||
| -TGCTGCTTTTATAATCTCGA--------------------------------------------------------------------------------------------- | 20 | - | - | 2 | |
| ATGCTGCTTTTATAATCT------------------------------------------------------------------------------------------------ | 18 | - | - | 1 | |
| ----TGCTTTTATAATCTCGAAAGGTA--------------------------------------------------------------------------------------- | 23 | 1 | - | - | |
| -TGCTGCTTTTATAATCTC----------------------------------------------------------------------------------------------- | 18 | - | - | 1 | |
| ---------------TCTCGAAAGGTACTGTGGA-------------------------------------------------------------------------------- | 19 | - | - | 1 | |
| ----------------------------------------------------------GTCTTCTAAGTTTTATGAA------------------------------------- | 19 | - | 1 | - | |
| -TGCTGCTTTTATAATCTCG---------------------------------------------------------------------------------------------- | 19 | - | - | 1 | |
| rat | ATGCTGCTTTTATAATCTCGAAAGGTACTGTGGAtcctataacttgtgagcttttcaaGTCTTCTAAGTTTTATGAAtttcctgagccttctttaccttcttggtctttgaagc | ||||
| ****************************************************************************************************************** | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000016427 ENSRNOG00000012031 St8sia2 | ||||
| rat | .....(((((....(((..((.(((((((..(((((.((.((((((.(((((.....)).))).)))))).)).))...)))..)).......)))))))..)))....))))) | 0.510 -18.81 | |||
| rat | chromosome:1:129038377:129038490:1 | Same_strand|Intronic_coding|ENSRNOT00000016427|ENSRNOG00000012031 ## ENSRNOG00000012031|protein_coding|St8sia2|Alpha-2,8-sialyltransferase 8B (EC 2.4.99.-) (ST8Sia II) (Sialyltransferase X) (STX). [Source:UniProtKB/Swiss-Prot;Acc:Q07977] |
sblock765 [novel_lenNOK_multiarm_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.484 | no | no | 0.29/0.50 | 18/24/0.67 | 0.8 0.0 0.0 | 1.0 0.0 0.0 | 8 2 1 | 0 0 0 | 1 1 1 | 0 0 0 | 4 29 4 | 23 8 37 | 5arm 3arm 3arm | 1 1 1 | nd nd nd | 0.11 0.58 0.20 | 1 12 2 | 12 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------CACAGGA------------------------------------------------------------------------------------------------------- | 7 | novel |
| seed | -----CAUCACA---------------------------------------------------------------------------------------------------------- | 2 | novel |
| seed | ------------------------------------------------------------------GACUUAG--------------------------------------------- | 2 | novel |
| seed | -----------------------------------------------------------------------------------------------AGAUGUG---------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -------TCACAGGATAATGTCTAC--------------------------------------------------------------------------------------------- | 18 | 4 | |
| -----------------------------------------------------------------TGACTTAGAAAAGACAAATCAAGT----------------------------- | 24 | 2 | |
| ----TCATCACAGGATAATGTCTACTG------------------------------------------------------------------------------------------- | 23 | 2 | |
| -------TCACAGGATAATGTCTACTG------------------------------------------------------------------------------------------- | 20 | 2 | |
| ----------------------------------------------------------------------------------------------GAGATGTGATCCCTTGTGTG---- | 20 | 1 | |
| -------TCACAGGATAATGTCTACTGCG----------------------------------------------------------------------------------------- | 22 | 1 | |
| rat | cctgTCATCACAGGATAATGTCTACTGcgggtagtgggagtttgagaggcattcatagctgcttaTGACTTAGAAAAGACAAATCAAGTacccagagatgtgatcccttgtgtgctgg | ||
| ********************************************************************************************************************** | |||
| -------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000016427 ENSRNOG00000012031 St8sia2 | ||
| rat | ((.((...((((((((.((((((.((..(((((.((((((((((((.(((.......))).)))).)))))............)))..))))))))))))).))))..)))).)).)) | 0.440 -28.70 |
| rat | chromosome:1:129021232:129021349:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000016427|ENSRNOG00000012031 ## ENSRNOG00000012031|protein_coding|St8sia2|Alpha-2,8-sialyltransferase 8B (EC 2.4.99.-) (ST8Sia II) (Sialyltransferase X) (STX). [Source:UniProtKB/Swiss-Prot;Acc:Q07977] |
novel_lenNOK_multiarm_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH (3 loci)
block1412985 [novel_lenNOK_multiarm_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.166 | no | no | 0.36/0.58 | 19/22/0.43 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 4 1 1 | 0 0 0 | 2 1 1 | 0 0 0 | 4 11 10 | -4 -12 -18 | 5arm_loop 5arm_loop 3arm_loop | 2 2 2 | nd nd nd | 0.53 0.70 0.77 | 5 13 17 | 7 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----CUCCACU--------------------------------------- | 4 | novel | |
| seed | ------------CAGUCUC-------------------------------- | 1 | novel | |
| seed | --GUGCUCC------------------------------------------ | 1 | novel | |
| seed | --------------------CUGCAAG------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ----GCTCCACTCAGTCTCTCTG---------------------------- | 19 | 4 | - | |
| -TGTGCTCCACTCAGTCTCTCTG---------------------------- | 22 | - | 1 | |
| -------------------TCTGCAAGTCCTATTTTTGAGA---------- | 22 | - | 1 | |
| -----------TCAGTCTCTCTGCAAGTCCT-------------------- | 20 | - | 1 | |
| rat | ttgtGCTCCACTCAGTCTCTCTGcaagtcctatttttgagatgagtcataa | |||
| *************************************************** | ||||
| rat | .((((....(((((.((((..................))))))))))))). | 0.990 -8.77 | ||
| rat | chromosome:3:140478103:140478153:-1 | intergenic |
sblock2600 [novel_lenNOK_multiarm_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.135 | no | no | 0.61/0.70 | 18/20/0.33 | 0.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 2 0 | -4 5 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.44 0.53 | 4 5 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---ACCCAGG----------------------------------- | 2 | novel | |
| seed | --------------------------CCUUGGG------------ | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T5S2 | |||
| --CACCCAGGCAAACACAGC------------------------- | 18 | - | 2 | |
| -------------------------GCCTTGGGATCCAGGCAGCC | 20 | 1 | - | |
| rat | gcCACCCAGGCAAACACAGCtgaacGCCTTGGGATCCAGGCAGCC | |||
| ********************************************* | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000009714 ENSRNOG00000007377 Slit3 | |||
| rat | (((.(((((((...((....))...)))).))).....))).... | 0.850 -12.80 | ||
| rat | chromosome:10:20196361:20196405:1 | Same_strand|Intronic_coding|ENSRNOT00000009714|ENSRNOG00000007377 ## ENSRNOG00000007377|protein_coding|Slit3|Slit homolog 3 protein precursor (Slit-3) (Multiple epidermal growth factor-like domains 5). [Source:UniProtKB/Swiss-Prot;Acc:O88280] |
sblock4096 [novel_lenNOK_multiarm_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.059 | no | no | 0.33/0.37 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 3 0 | -4 8 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.39 0.61 | 4 11 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------GUUAAGG----------- | 1 | novel |
| seed | ----GGCUGUU------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T2S2 | |||
| ---TGGCTGTTATTCATTTGT--------------------------- | 18 | 1 | |
| -----------------------------AGTTAAGGGGCTATTTTCT | 19 | 1 | |
| rat | tctTGGCTGTTATTCATTTGTataatttcAGTTAAGGGGCTATTTTCT | ||
| ************************************************ | |||
| rat | (((((((((..(((.((....)))))..)))))))))........... | 0.990 -8.50 |
| rat | chromosome:14:51432745:51432792:-1 | intergenic |
novel_lenNOK_shortStem_5varHIGH_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH (3 loci)
block647973 [novel_lenNOK_shortStem_5varHIGH_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.48/0.50 | 22/25/0.50 | 2.5 | 1.0 | 2 | 0 | 1 | 0 | 3 | -4 | 5arm_loop_3arm | 2 | nd | 0.36 | 4 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----AGGUCUU------------------------------------------ | 1 | novel |
| seed | ---------UUGUAAU------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------CTTGTAATCCTCTGCGTCTCTC----------------------- | 22 | 1 | |
| ---TAGGTCTTGTAATCCTCTGCGTCTC------------------------- | 25 | 1 | |
| rat | ctcTAGGTCTTGTAATCCTCTGCGTCTCTCgatggggaggaaacaccttgaga | ||
| ***************************************************** | |||
| rat | (((.((((.((....((((((.((((....)))).)))))))).)))).))). | 1.000 -21.00 |
| rat | chromosome:17:20165745:20165797:1 | intergenic |
block648040 [novel_lenNOK_shortStem_5varHIGH_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.48/0.50 | 22/25/0.50 | 2.5 | 1.0 | 2 | 0 | 1 | 0 | 3 | -4 | 5arm_loop_3arm | 2 | nd | 0.36 | 4 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----AGGUCUU------------------------------------------ | 1 | novel |
| seed | ---------UUGUAAU------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------CTTGTAATCCTCTGCGTCTCTC----------------------- | 22 | 1 | |
| ---TAGGTCTTGTAATCCTCTGCGTCTC------------------------- | 25 | 1 | |
| rat | ctcTAGGTCTTGTAATCCTCTGCGTCTCTCgatggggaggaaacaccttgaga | ||
| ***************************************************** | |||
| rat | (((.((((.((....((((((.((((....)))).)))))))).)))).))). | 1.000 -21.00 |
| rat | chromosome:17:20192536:20192588:1 | intergenic |
block1724478 [novel_lenNOK_shortStem_5varHIGH_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.37/0.44 | 18/20/0.20 | 1.4 | 2.2 | 5 | 0 | 4 | 0 | 1 | -5 | 5arm_loop | 1 | nd | 0.39 | 4 | 5 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ----GAAAGGC---------------------------- | 3 | novel | |||
| seed | --GGGAAAG------------------------------ | 1 | novel | |||
| seed | ---GGAAAGG----------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S1 | T3S1 | T3S2 | T5S1 | |||
| ---GGAAAGGCGAAAAGAAAAA----------------- | 19 | 1 | 1 | - | - | |
| -AGGGAAAGGCGAAAAGAA-------------------- | 18 | - | 1 | - | - | |
| --GGGAAAGGCGAAAAGAAAAA----------------- | 20 | - | - | 1 | - | |
| ---GGAAAGGCGAAAAGAAAA------------------ | 18 | - | - | - | 1 | |
| rat | aAGGGAAAGGCGAAAAGAAAAAccagcttcctttccctt | |||||
| *************************************** | ||||||
| rat | ((((((((((....(((.........))))))))))))) | 1.000 -12.50 | ||||
| rat | chromosome:5:28162166:28162204:-1 | intergenic |
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