other hairpins
novel_multiarm_DicerNOK_Multihit_5varHIGH (3 loci)
sblock1404 [novel_multiarm_DicerNOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.356 | no | no | 0.48/0.58 | 19/23/0.75 | 1.5 0.0 0.0 | 0.0 0.0 0.0 | 2 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 0 16 4 | 19 7 18 | 5arm 3arm 3arm | 2 77 77 | nd nd nd | 0.30 0.32 0.25 | 2 5 3 | 4 | 2 | -15 | -19 |
| reads | miRBase family seed | |||
| seed | -GUUGCAG------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ---------------------------------------------------------------------GUCACAG---------------- | 1 | novel | |
| seed | ----------------------------------------------------------GGACCUC--------------------------- | 1 | novel | |
| seed | ----GCAGGAU--------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S1 | T5S1 | |||
| ---------------------------------------------------------AGGACCTCCTCTGTCACAG---------------- | 19 | 1 | - | |
| --------------------------------------------------------------------TGTCACAGCCTAGCCCTTCA---- | 20 | - | 1 | |
| ---TGCAGGATCTCCAGTGTTGT--------------------------------------------------------------------- | 20 | - | 1 | |
| TGTTGCAGGATCTCCAGTGTTGT--------------------------------------------------------------------- | 23 | - | 1 | |
| rat | TGTTGCAGGATCTCCAGTGTTGTaggacgtccaatgttgcaggaccttcactgtcaaAGGACCTCCTCTGTCACAGCCTAGCCCTTCAgact | |||
| ******************************************************************************************** | ||||
| rat | ..(((.(((..((..((.(((((((((.((((....((((((........))).))).)))).)))).....))))))))).))).)))... | 0.770 -22.90 | ||
| rat | chromosome:1:51030861:51030952:1 | intergenic ## {Repeats: trf 1 10 0 class=trf,trf 44 67 0 class=trf} |
sblock410 [novel_multiarm_DicerNOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.365 | no | no | 0.48/0.58 | 19/23/0.75 | 1.5 0.0 0.0 | 0.0 0.0 0.0 | 2 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 0 16 4 | 19 7 18 | 5arm 3arm 3arm | 2 77 77 | nd nd nd | 0.30 0.32 0.25 | 2 5 3 | 4 | 2 | -15 | -16 |
| reads | miRBase family seed | |||
| seed | -GUUGCAG------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ---------------------------------------------------------------------GUCACAG---------------- | 1 | novel | |
| seed | ----------------------------------------------------------GGACCUC--------------------------- | 1 | novel | |
| seed | ----GCAGGAU--------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S1 | T5S1 | |||
| ---------------------------------------------------------AGGACCTCCTCTGTCACAG---------------- | 19 | 1 | - | |
| --------------------------------------------------------------------TGTCACAGCCTAGCCCTTCA---- | 20 | - | 1 | |
| ---TGCAGGATCTCCAGTGTTGT--------------------------------------------------------------------- | 20 | - | 1 | |
| TGTTGCAGGATCTCCAGTGTTGT--------------------------------------------------------------------- | 23 | - | 1 | |
| rat | TGTTGCAGGATCTCCAGTGTTGTaggacgtccaatgttgcaggaccatcactgtcaaAGGACCTCCTCTGTCACAGCCTAGCCCTTCAgact | |||
| ******************************************************************************************** | ||||
| rat | ..(((.(((..((..((.(((((((((.((((....((((((........))).))).)))).)))).....))))))))).))).)))... | 0.770 -22.90 | ||
| rat | chromosome:1:51005733:51005824:-1 | intergenic ## {Repeats: trf 24 47 0 class=trf} |
novel_multiarm_DicerNOK_Multihit_loopOverlap_randfoldOK (3 loci)
sblock1314 [novel_multiarm_DicerNOK_Multihit_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.41/0.50 | 18/22/0.75 | 0.0 1.0 0.0 | 0.0 1.0 0.0 | 1 2 1 | 0 0 0 | 1 1 1 | 0 0 0 | 15 33 24 | 10 -1 12 | 5arm 3arm 3arm | 17 17 17 | nd nd nd | 0.14 0.35 0.17 | 1 4 2 | 4 | 1 | -13 | -15 |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------GGCUGCU--------------------------------------------- | 1 | novel |
| seed | ----------------------------------------------------------------------GACUGAA---------------------------------- | 1 | novel |
| seed | ---------------------------------------------------------GAGGCUG----------------------------------------------- | 1 | miR-485 |
| seed | ----------------AGGUUGU---------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ---------------------------------------------------------------------TGACTGAAGGCAGAAGAC------------------------ | 18 | 1 | |
| --------------------------------------------------------TGAGGCTGCTTGTTGACTGA----------------------------------- | 20 | 1 | |
| ----------------------------------------------------------AGGCTGCTTGTTGACTGAAG--------------------------------- | 20 | 1 | |
| ---------------TAGGTTGTCTTCTGTGTTCTCA-------------------------------------------------------------------------- | 22 | 1 | |
| rat | ggcacagaggaataaTAGGTTGTCTTCTGTGTTCTCAttgctgcttcttttcacccTGAGGCTGCTTGTTGACTGAAGGCAGAAGACaccctggcatgtatgttttgtcca | ||
| *************************************************************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000043702 ENSRNOG00000034080 RGD1563490_predicted | ||
| rat | ((.((((((..(((.((((.((((((((((.((((((..((.(((((..........))))).))....)))..))).)))))))))).)))).....))).)))))))). | 0.990 -41.00 |
| rat | chromosome:1:47861892:47862002:1 | Same_strand|Intronic_non-coding|ENSRNOT00000043702|ENSRNOG00000034080 ## ENSRNOG00000034080|protein_coding|RGD1563490_predicted| |
sblock184 [novel_multiarm_DicerNOK_Multihit_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.41/0.50 | 18/22/0.75 | 0.0 1.0 0.0 | 0.0 1.0 0.0 | 1 2 1 | 0 0 0 | 1 1 1 | 0 0 0 | 16 32 23 | 10 -1 12 | 5arm 3arm 3arm | 17 17 17 | nd nd nd | 0.14 0.35 0.17 | 1 4 2 | 4 | 1 | -13 | -15 |
| reads | miRBase family seed | ||
| seed | -----------------AGGUUGU--------------------------------------------------------------------------------------- | 1 | novel |
| seed | ----------------------------------------------------------GAGGCUG---------------------------------------------- | 1 | miR-485 |
| seed | -----------------------------------------------------------------------GACUGAA--------------------------------- | 1 | novel |
| seed | ------------------------------------------------------------GGCUGCU-------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ---------------------------------------------------------TGAGGCTGCTTGTTGACTGA---------------------------------- | 20 | 1 | |
| ----------------------------------------------------------------------TGACTGAAGGCAGAAGAC----------------------- | 18 | 1 | |
| -----------------------------------------------------------AGGCTGCTTGTTGACTGAAG-------------------------------- | 20 | 1 | |
| ----------------TAGGTTGTCTTCTGTGTTCTCA------------------------------------------------------------------------- | 22 | 1 | |
| rat | aggcacagaggaataaTAGGTTGTCTTCTGTGTTCTCAttgctgcttcttttcacccTGAGGCTGCTTGTTGACTGAAGGCAGAAGACaccctggcatgtatgttttgtcc | ||
| *************************************************************************************************************** | |||
| ------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000045258 ENSRNOG00000033713 | ||
| ------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000043557 ENSRNOG00000033713 | ||
| ------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000051032 ENSRNOG00000033713 | ||
| rat | .((.((((((..(((.((((.((((((((((.((((((..((.(((((..........))))).))....)))..))).)))))))))).)))).....))).)))))))) | 0.990 -39.50 |
| rat | chromosome:1:49028491:49028601:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000051032|ENSRNOG00000033713 ## ENSRNOG00000033713|protein_coding|| |
sblock4303 [novel_multiarm_DicerNOK_Multihit_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.50/0.57 | 19/22/0.75 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 1 1 1 1 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 4 18 53 12 | 28 17 -21 26 | 5arm 5arm 5arm_loop_3arm 3arm | 20 23 35 35 | nd nd nd nd | 0.36 0.16 0.59 0.24 | 3 2 7 3 | 4 | 3 | 6 | 6 |
| reads | miRBase family seed | ||||
| seed | ----------------------------------------------------------------------------------------UGUGAUG------------------------- | 1 | novel | ||
| seed | ------------------------------------------------------ACCUUCC----------------------------------------------------------- | 1 | novel | ||
| seed | -------------------AAACAGU---------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -----ACUCGGG------------------------------------------------------------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T2S1 | T4S1 | |||
| ----AACTCGGGCCCATGGAAACAGT---------------------------------------------------------------------------------------------- | 22 | 1 | - | - | |
| ------------------GAAACAGTGGCATGGTTCG----------------------------------------------------------------------------------- | 19 | - | - | 1 | |
| -----------------------------------------------------AACCTTCCTGCAAAGGCCATTG--------------------------------------------- | 22 | - | 1 | - | |
| ---------------------------------------------------------------------------------------GTGTGATGCTGTACCCATCCC------------ | 21 | 1 | - | - | |
| rat | aagtAACTCGGGCCCATGGAAACAGTGGCATGGTTCGtgccaaattccgaagcAACCTTCCTGCAAAGGCCATTGgacacagaatccGTGTGATGCTGTACCCATCCCggatttaaacta | ||||
| ************************************************************************************************************************ | |||||
| rat | .(((((..((((...((((..(((((.((((((((((((((((...((...(((.......)))...))...)))).))).))).))))))...)))))..))))))))..))...))). | 0.970 -38.20 | |||
| rat | chromosome:14:89697913:89698032:1 | intergenic |
novel_multiarm_DicerNOK_loopOverlap_mirtron (3 loci)
sblock12380 [novel_multiarm_DicerNOK_loopOverlap_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.731 | no | no | 0.43/0.60 | 20/23/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 18 27 | 6 -7 | 5arm 3arm_loop | 1 1 | 25 3 | 0.25 0.48 | 2 6 | 2 | 2 | 0 | -13 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------AGUGUGU------------------------------------------ | 1 | novel | |
| seed | -------------------GCACUGG---------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T3S2 | |||
| ----------------------------------------------GAGTGTGTTGGTCTTTGAATCTC--------------------------- | 23 | - | 1 | |
| ------------------AGCACTGGGAAGATGGCGGA---------------------------------------------------------- | 20 | 1 | - | |
| rat | cgcatgagcagtagctggAGCACTGGGAAGATGGCGGAggaagggtGAGTGTGTTGGTCTTTGAATCTCtctagtggggctttgagaatccgatgc | |||
| ************************************************************************************************ | ||||
| ---------------------------------------------------------------------------------------------------------- | ENSRNOT00000061506 ENSRNOG00000033159 Rds | |||
| ---------------------------------------------------------------------------------------------------------- | ENSRNOT00000061505 ENSRNOG00000033159 Rds | |||
| ---------------------------------------------------------------------------------------------------------- | ENSRNOT00000061503 ENSRNOG00000033159 Rds | |||
| ---------------------------------------------------------------------------------------------------------- | ENSRNOT00000061502 ENSRNOG00000033159 Rds | |||
| .........................>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000021803 ENSRNOG00000016269 RGD1308469_predicted | |||
| rat | .((((((.(((.((((....((((((..((((..((((((..((.........))..)))))).))))..)))))).)))))))....))..)))) | 0.830 -23.70 | ||
| rat | chromosome:9:9394519:9394614:1 | Opposite_strand|Intronic_coding|ENSRNOT00000061503|ENSRNOG00000033159 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000061500|ENSRNOG00000033159 ## Same_strand|Boundary_non-coding|ENSRNOT00000021803|ENSRNOG00000016269 ## Same_strand|Intronic_coding|ENSRNOT00000021803|ENSRNOG00000016269 ## ENSRNOG00000033159|protein_coding|Rds|Peripherin-2 (Retinal degeneration slow protein). [Source:UniProtKB/Swiss-Prot;Acc:P17438] ## ENSRNOG00000016269|protein_coding|RGD1308469_predicted| |
sblock5395 [novel_multiarm_DicerNOK_loopOverlap_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.054 | no | no | 0.41/0.57 | 18/22/0.75 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 1 1 1 1 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 8 21 29 12 | 3 -9 -16 0 | 5arm 5arm_loop_3arm 5arm_loop_3arm 3arm | 1 1 1 1 | 4 16 23 28 | 0.36 0.52 0.35 0.22 | 4 3 3 2 | 4 | 3 | -1 | -3 |
| reads | miRBase family seed | ||||
| seed | -------------------------------------CCAACAA---------------------- | 1 | novel | ||
| seed | ----------------------ACAGUAA------------------------------------- | 1 | novel | ||
| seed | ------------------------------GGCACAG----------------------------- | 1 | novel | ||
| seed | ---------GUUCCGU-------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S1 | T3S2 | T4S2 | |||
| ------------------------------------GCCAACAAGATGAACGGA------------ | 18 | - | - | 1 | |
| ---------------------GACAGTAACGGCACAGCCAAC------------------------ | 21 | - | 1 | - | |
| -----------------------------CGGCACAGCCAACAAGATGA----------------- | 20 | 1 | - | - | |
| --------GGTTCCGTTTTTTGACAGTAAC------------------------------------ | 22 | - | 1 | - | |
| rat | tggctcctGGTTCCGTTTTTTGACAGTAACGGCACAGCCAACAAGATGAACGGAgctttggatcat | ||||
| ****************************************************************** | |||||
| +++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000023436 ENSRNOG00000023661 Cugbp2 | ||||
| +++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000058086 ENSRNOG00000023661 Cugbp2 | ||||
| +++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000058085 ENSRNOG00000023661 Cugbp2 | ||||
| rat | (((.(((.((((((((((.((....((...(((...))).))..)).))))))))))..)))))). | 0.980 -19.50 | |||
| rat | chromosome:17:82863705:82863770:1 | Same_strand|Boundary_non-coding|ENSRNOT00000058086|ENSRNOG00000023661 ## Same_strand|Boundary_coding|ENSRNOT00000023436|ENSRNOG00000023661 ## ENSRNOG00000023661|protein_coding|Cugbp2|CUG-BP- and ETR-3-like factor 2 (CELF-2) (Bruno-like protein 3) (RNA- binding protein BRUNOL-3) (CUG triplet repeat RNA-binding protein 2) (CUG-BP2) (ELAV-type RNA-binding protein 3) (ETR-3) (Protein ETR-R3) (Neuroblastoma apoptosis-related RNA-binding pr [Source:UniProtKB/Swiss-Prot;Acc:Q792H5] |
sblock584 [novel_multiarm_DicerNOK_loopOverlap_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.019 | no | no | 0.60/0.67 | 20/21/1.00 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 39 26 12 | -3 3 17 | 5arm_loop 3arm 3arm | 1 1 1 | 36 15 1 | 0.33 0.10 0.15 | 4 1 1 | 3 | 3 | 4 | 0 |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------------------------------------------UCACCAC------------------------ | 1 | novel | ||
| seed | ----------------------------------------GCCAGGG--------------------------------------------------------------- | 1 | novel | ||
| seed | -----------------------------------------------------------------CGACCCU-------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S2 | |||
| ---------------------------------------AGCCAGGGCTCTGGGTGCTGA-------------------------------------------------- | 21 | - | - | 1 | |
| ------------------------------------------------------------------------------CTCACCACCCTGCTCTTGCA------------ | 20 | 1 | - | - | |
| ----------------------------------------------------------------TCGACCCTTGGCTGCTCACC-------------------------- | 20 | - | 1 | - | |
| rat | gcaggtgaggaccgtgggagttcatgggacatggggcgtAGCCAGGGCTCTGGGTGCTGAagcaTCGACCCTTGGCTGCTCACCACCCTGCTCTTGCAgtaagaccttgc | ||||
| ************************************************************************************************************** | |||||
| >>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>> | ENSRNOT00000028588 ENSRNOG00000021051 Pscd2 | ||||
| rat | ((((((....((.((((((((....(((...(((((.((((((((((.((..(((((....))))))).)))))))))))).)))))).)))))))).))...)))).)) | 1.000 -48.30 | |||
| rat | chromosome:1:96290159:96290268:-1 | Same_strand|Intronic_coding|ENSRNOT00000028588|ENSRNOG00000021051 ## ENSRNOG00000021051|protein_coding|Pscd2|Cytohesin-2 (PH, SEC7 and coiled-coil domain-containing protein 2) (CLM2) (ARF nucleotide-binding site opener) (Protein ARNO) (SEC7 homolog B). [Source:UniProtKB/Swiss-Prot;Acc:P63035] |
novel_multiarm_DicerNOK_shortStem_5varHIGH (3 loci)
sblock10369 [novel_multiarm_DicerNOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.022 | no | no | 0.30/0.46 | 19/24/0.80 | 0.0 1.5 | 0.0 1.8 | 1 4 | 0 0 | 1 1 | 0 0 | 10 3 | 0 2 | 5arm 3arm | 1 1 | nd nd | 0.25 0.16 | 3 1 | 5 | 1 | 7 | 5 |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------UCAGUAU------------------ | 2 | novel |
| seed | -----------GGUAGUG----------------------------------------------------- | 1 | novel |
| seed | -----------------------------------------GAGAUUC----------------------- | 1 | novel |
| seed | -----------------------------------------------CAGUAUC----------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ---------------------------------------------TTCAGTATCTAGTTCCCAATTAA--- | 23 | 2 | |
| ----------------------------------------------TCAGTATCTAGTTCCCAAT------ | 19 | 1 | |
| ----------TGGTAGTGGATGCTGTATAGAGAG------------------------------------- | 24 | 1 | |
| ----------------------------------------TGAGATTCAGTATCTAGTTCCCAA------- | 24 | 1 | |
| rat | agctaatgaaTGGTAGTGGATGCTGTATAGAGAGacgactTGAGATTCAGTATCTAGTTCCCAATTAAgct | ||
| *********************************************************************** | |||
| rat | ((((..(((.(((.(((((((((((.((...(((....)))...)).))))))))).)).))).))))))) | 1.000 -18.40 |
| rat | chromosome:6:122582605:122582675:1 | intergenic |
sblock3365 [novel_multiarm_DicerNOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.056 | no | no | 0.38/0.50 | 20/23/1.00 | 1.5 2.7 | 0.8 3.0 | 4 3 | 0 0 | 3 3 | 0 0 | 0 3 | 11 7 | 5arm 3arm | 1 1 | nd nd | 0.25 0.48 | 3 7 | 7 | 5 | 0 | -15 |
| reads | miRBase family seed | ||||||
| seed | -AAAGAUA---------------------------------------------------------------------- | 3 | novel | ||||
| seed | -------------------------------------------------------GGAAUGU---------------- | 2 | miR-1/206 | ||||
| seed | ---------------------------------------------------AAGUGGA-------------------- | 1 | novel | ||||
| seed | -------AAGAGAC---------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T4S2 | T5S1 | T5S2 | |||
| TAAAGATAAGAGACTGAGCAGAG------------------------------------------------------- | 23 | - | 1 | - | 2 | - | |
| ------------------------------------------------------TGGAATGTCTTTGGGATTAGT--- | 21 | - | - | - | 1 | - | |
| ------TAAGAGACTGAGCAGAGCCT---------------------------------------------------- | 20 | - | - | 1 | - | - | |
| ------------------------------------------------------TGGAATGTCTTTGGGATTAG---- | 20 | - | - | - | - | 1 | |
| --------------------------------------------------TAAGTGGAATGTCTTTGGGA-------- | 20 | 1 | - | - | - | - | |
| rat | TAAAGATAAGAGACTGAGCAGAGCCTtagagctgctgggagaacagactcTAAGTGGAATGTCTTTGGGATTAGTtta | ||||||
| ****************************************************************************** | |||||||
| rat | ..........(((((((.(((((.(((((((...(((......))).)))))))........)))))...))))))). | 0.690 -18.00 | |||||
| rat | chromosome:12:5598534:5598611:1 | intergenic |
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