other hairpins
novel_multiarm_DicerNOK_shortStem_5varHIGH (3 loci)
sblock8054 [novel_multiarm_DicerNOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.309 | no | no | 0.43/0.53 | 19/23/0.80 | 2.7 0.0 | 0.7 0.0 | 3 2 | 0 0 | 1 1 | 0 0 | 0 1 | 6 3 | 5arm 3arm | 1 1 | nd nd | 0.21 0.10 | 2 1 | 5 | 1 | -4 | -1 |
| reads | miRBase family seed | ||
| seed | -----GCCUGAA------------------------------------------------ | 2 | novel |
| seed | ---------------------------------------GGUCUGC-------------- | 2 | novel |
| seed | -UCAUGCC---------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------------------------------TGGTCTGCACACTTTTAGAGT- | 21 | 2 | |
| ----TGCCTGAAGAGACTGTGACAC----------------------------------- | 21 | 1 | |
| TTCATGCCTGAAGAGACTGTGAC------------------------------------- | 23 | 1 | |
| ----TGCCTGAAGAGACTGTGAC------------------------------------- | 19 | 1 | |
| rat | TTCATGCCTGAAGAGACTGTGACACacttggttgtccaTGGTCTGCACACTTTTAGAGTa | ||
| ************************************************************ | |||
| rat | ....((((((.((((..((((.((.((((((....))).))).))))))))))))).))) | 0.960 -12.90 |
| rat | chromosome:3:76968189:76968248:1 | intergenic |
novel_multiarm_DicerOK_nonpairedHIGH_bulgeHIGH (3 loci)
sblock11626 [novel_multiarm_DicerOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.068 | no | no | 0.46/0.57 | 21/24/1.00 | 0.0 0.0 | 0.0 0.0 | 1 2 | 0 0 | 1 1 | 0 0 | 17 17 | 2 3 | 5arm 3arm | 1 1 | nd nd | 0.38 0.42 | 4 4 | 3 | 2 | 1 | 3 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------CAGUUCA--------------------------------- | 2 | novel | |
| seed | ------------------AGACACA-------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ----------------------------------------------ACAGTTCAGACGAATCGTGTGTCA----------------- | 24 | - | 2 | |
| -----------------CAGACACATCGTTGCCCCTTG------------------------------------------------- | 21 | 1 | - | |
| rat | ggacactaggtgaatggCAGACACATCGTTGCCCCTTGattttatcACAGTTCAGACGAATCGTGTGTCAataatgcttaatgttca | |||
| *************************************************************************************** | ||||
| rat | (((((.(((((...(((((.((...(((((....((((((...)))).))....)))))...)).))))).....))))).))))). | 0.480 -22.00 | ||
| rat | chromosome:8:57717836:57717922:-1 | intergenic |
sblock1407 [novel_multiarm_DicerOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.570 | no | no | 0.45/0.47 | 19/22/0.80 | 0.0 0.0 | 0.0 0.0 | 4 1 | 0 0 | 1 1 | 0 0 | 22 19 | 16 16 | 5arm 3arm | 1 1 | nd nd | 0.45 0.32 | 5 4 | 5 | 2 | 3 | 2 |
| reads | miRBase family seed | |||
| seed | -----------------------GCAGCCU------------------------------------------------------------------------------------------ | 4 | novel | |
| seed | -----------------------------------------------------------------------------------GAGACGA------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ----------------------TGCAGCCTACTCTTTGACAAGA---------------------------------------------------------------------------- | 22 | - | 4 | |
| ----------------------------------------------------------------------------------TGAGACGAGTGTATCTAGG------------------- | 19 | 1 | - | |
| rat | tgaagggcagcaccagtggctcTGCAGCCTACTCTTTGACAAGAttatgaccaaagggagacactactcctttggcagatgatgagacgagtgtatctagggcggggtagcttccactcc | |||
| ************************************************************************************************************************ | ||||
| rat | .((..((.((((((....((((((.....(((((.((..((..(((.((.(((((.((((......))))))))))))))..)).)).)))))....))))))..))).))).))..)). | 0.900 -33.70 | ||
| rat | chromosome:1:51034330:51034449:1 | intergenic |
sblock3368 [novel_multiarm_DicerOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.133 | no | no | 0.45/0.60 | 20/21/1.00 | 0.0 0.0 0.0 | 0.0 0.0 0.3 | 1 2 3 | 0 0 0 | 1 1 1 | 0 0 0 | 14 28 24 | 21 7 7 | 5arm 5arm 3arm | 1 1 1 | nd nd nd | 0.40 0.40 0.40 | 5 4 4 | 6 | 1 | 2 | 3 |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------------------AGCAGGC------------------------------------- | 3 | novel |
| seed | -----------------------------GGGCUAA----------------------------------------------------------------------------- | 2 | novel |
| seed | ---------------CCGUUGU------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----------------------------TGGGCTAAGTCTTGACTGGA----------------------------------------------------------------- | 20 | 2 | |
| --------------------------------------------------------------------AAGCAGGCTCTTTTTCCTCAC------------------------ | 21 | 2 | |
| --------------TCCGTTGTTGGGACTGGGCT------------------------------------------------------------------------------- | 20 | 1 | |
| --------------------------------------------------------------------AAGCAGGCTCTTTTTCCTCA------------------------- | 20 | 1 | |
| rat | cagcatcctgacaaTCCGTTGTTGGGACTGGGCTAAGTCTTGACTGGAatgctggccaagtccagcagAAGCAGGCTCTTTTTCCTCACcgtccccggctttgtgaggtttct | ||
| ***************************************************************************************************************** | |||
| rat | ......(((.((((.(((.....(((((.(((..(((.((((.((....((((((......))))))..))))))..)))..))).....))))))))..)))).)))..... | 0.490 -36.50 |
| rat | chromosome:12:5598894:5599006:1 | intergenic |
novel_multiarm_Multihit_loopOverlap (3 loci)
block1090774 [novel_multiarm_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.078 | no | no | 0.53/0.68 | 19/22/0.75 | 0.0 0.3 | 0.0 0.7 | 1 3 | 0 0 | 1 1 | 0 0 | 35 9 | -19 3 | 5arm_loop_3arm 3arm | 23 26 | nd nd | 0.27 0.16 | 3 1 | 4 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------UCUACCC----------------------- | 2 | novel |
| seed | ------------------------------------CCCUGGG-------------------------------- | 1 | novel |
| seed | ----------------------------------------------CUACCCU---------------------- | 1 | novel |
| len | cloning frequencies | ||
| T2S2 | |||
| --------------------------------------------TTCTACCCTGCTGACATCACCC--------- | 22 | 2 | |
| ---------------------------------------------TCTACCCTGCTGACATCAC----------- | 19 | 1 | |
| -----------------------------------GCCCTGGGCTTCTACCCTGCTG------------------ | 22 | 1 | |
| rat | ccagacctgaaggtgatgtcacactgaggtgctggGCCCTGGGCTTCTACCCTGCTGACATCACCCtgacctggc | ||
| *************************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061299 ENSRNOG00000000777 RT1-S3 | ||
| rat | ((((.......((((((((((((....((((..(((((...))))).)))).)).)))))))))).....)))). | 0.880 -27.00 |
| rat | chromosome:20:2886565:2886639:1 | Same_strand|Boundary_non-coding|ENSRNOT00000029802|ENSRNOG00000000777 ## Same_strand|Intronic_non-coding|ENSRNOT00000061299|ENSRNOG00000000777 ## ENSRNOG00000000777|protein_coding|RT1-S3|RT1-149 protein [Source:RefSeq_peptide;Acc:NP_001008826] |
block1263174 [novel_multiarm_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.173 | no | no | 0.45/0.48 | 20/23/1.00 | 0.0 0.0 | 0.0 0.0 | 1 2 | 0 0 | 1 1 | 0 0 | 4 10 | 2 -7 | 5arm 5arm_loop_3arm | 12 12 | nd nd | 0.20 0.26 | 3 5 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------UCAAUGA------------------------------------------------ | 2 | novel | |
| seed | -----CCCUUAU------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| ----------ATCAATGAACTGTGGCAGGAAGC--------------------------------- | 23 | - | 2 | |
| ----GCCCTTATCAATGAACTGTG------------------------------------------ | 20 | 1 | - | |
| rat | ctttGCCCTTATCAATGAACTGTGGCAGGAAGCtcaaggcaggttcttcactgataacttcagaga | |||
| ****************************************************************** | ||||
| rat | (((((...((((((.(((((((((((.....)))....))))....)))).))))))...))))). | 0.980 -15.40 | ||
| rat | chromosome:2:62800779:62800844:1 | intergenic |
sblock551 [novel_multiarm_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.143 | no | no | 0.41/0.72 | 18/22/0.80 | 0.7 0.0 0.0 | 1.0 0.0 0.0 | 3 1 1 | 0 0 0 | 3 1 1 | 0 0 0 | 5 42 41 | 27 -10 -3 | 5arm 5arm_loop_3arm 3arm_loop | 6 12 12 | nd nd nd | 0.38 0.59 0.30 | 4 6 3 | 5 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -------GACCGGA-------------------------------------------------------------------------------------------------------- | 2 | novel | |||
| seed | ----------------------------------------------------------CACCAGC----------------------------------------------------- | 1 | novel | |||
| seed | ------GGACCGG--------------------------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | -------------------------------------------GGAAUUU-------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T2S1 | T5S1 | T5S2 | |||
| ------------------------------------------TGGAATTTATGGATGACACCAG------------------------------------------------------ | 22 | - | - | - | 1 | |
| ------GGACCGGATCGCAGGGACAGT------------------------------------------------------------------------------------------- | 21 | - | 1 | - | - | |
| ---------------------------------------------------------ACACCAGCCGCTCTATCATC----------------------------------------- | 20 | 1 | - | - | - | |
| ------GGACCGGATCGCAGGGAC---------------------------------------------------------------------------------------------- | 18 | - | - | - | 1 | |
| -----AGGACCGGATCGCAGGGACAG-------------------------------------------------------------------------------------------- | 21 | - | - | 1 | - | |
| rat | tgggcAGGACCGGATCGCAGGGACAGTgcacgcaggtgcgagTGGAATTTATGGATGACACCAGCCGCTCTATCATCtgaaacgtcaaaggccctgttcgagagggtgatgtgctcac | |||||
| ********************************************************************************************************************** | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000048905 ENSRNOG00000032034 Q63403_RAT | |||||
| rat | ((((((..(((...((((((((....((.(((((((((.((((((......(((......))).))))))...))))))...)))))....)))))..)))...)))....)))))). | 0.990 -40.90 | ||||
| rat | chromosome:1:83438405:83438522:-1 | Same_strand|Intronic_non-coding|ENSRNOT00000048905|ENSRNOG00000032034 ## ENSRNOG00000032034|protein_coding|Q63403_RAT|Rattus norvegicus (clone REM3) ORF (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q63403] |
novel_multiarm_loopOverlap_randfoldOK (3 loci)
block1973546 [novel_multiarm_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.33/0.38 | 19/24/0.75 | 0.0 0.0 | 3.3 0.0 | 3 1 | 0 0 | 2 1 | 0 0 | 4 15 | -1 -9 | 5arm_loop 5arm_loop_3arm | 1 1 | nd nd | 0.26 0.33 | 2 4 | 4 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----GUCAGGA-------------------------------------------------- | 3 | novel | |
| seed | ----------------AACGAAG--------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ----TGTCAGGATATTAACGAAGAAGTG---------------------------------- | 24 | 1 | 1 | |
| ---------------TAACGAAGAAGTGCAAACTTT-------------------------- | 21 | - | 1 | |
| ----TGTCAGGATATTAACGAAG--------------------------------------- | 19 | - | 1 | |
| rat | actcTGTCAGGATATTAACGAAGAAGTGCAAACTTTgatttgagggtatcgtagagaagagt | |||
| ************************************************************** | ||||
| rat | (((((.((..((((((..(((((((((....)))))..))))..))))))...))..))))) | 1.000 -13.80 | ||
| rat | chromosome:6:122579749:122579810:-1 | intergenic |
block2247755 [novel_multiarm_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.40/0.45 | 20/23/1.00 | 0.0 0.0 | 0.0 1.5 | 1 2 | 0 0 | 1 2 | 0 0 | 6 12 | -2 -11 | 5arm_loop 5arm_loop_3arm | 1 1 | nd nd | 0.25 0.35 | 3 5 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------AGACUUC--------------------------------- | 2 | novel | |
| seed | -------CAGUCUA--------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ------------TAGACTTCATCTTCCAAGGGTCA------------------ | 23 | - | 1 | |
| ------TCAGTCTAGACTTCATCTTC--------------------------- | 20 | - | 1 | |
| ------------TAGACTTCATCTTCCAAGGG--------------------- | 20 | 1 | - | |
| rat | ctctctTCAGTCTAGACTTCATCTTCCAAGGGTCAggctggaggctgaggaga | |||
| ***************************************************** | ||||
| rat | .((((((((((((((.(((.((((.....)))).)))))))..)))))))))) | 1.000 -20.80 | ||
| rat | chromosome:7:112745708:112745760:1 | intergenic |
block2420455 [novel_multiarm_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.38/0.47 | 19/21/0.75 | 0.0 0.0 | 0.0 0.0 | 3 1 | 0 0 | 1 1 | 0 0 | 18 2 | -20 1 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.48 0.26 | 5 2 | 4 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------GACAAAU-------------------- | 3 | novel |
| seed | --------------------------GUCAAGC------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------------------TGACAAATGTCAAGCTTTCTG------- | 21 | 3 | |
| -------------------------TGTCAAGCTTTCTGGTGTC-- | 19 | 1 | |
| rat | ggataccaaagccagagaTGACAAATGTCAAGCTTTCTGGTGTCct | ||
| ********************************************** | |||
| rat | ((((((((((((..((.((.....)).))..))))..)))))))). | 1.000 -18.00 |
| rat | chromosome:8:72092814:72092859:1 | intergenic |
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