other hairpins
novel_multiarm_loopOverlap_randfoldOK (3 loci)
novel_multiarm_randfoldOK (3 loci)
sblock4375 [novel_multiarm_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.55/0.55 | 20/20/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 4 25 | 33 2 | 5arm 3arm | 1 1 | nd nd | 0.30 0.15 | 2 1 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----GGGGUGG--------------------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | -------------------------------------------------------------------------AUUGGCU------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S1 | |||
| ------------------------------------------------------------------------CATTGGCTCACATGCCTGAG------------------------- | 20 | - | 1 | |
| ----TGGGGTGGGGACAAAAAGGA--------------------------------------------------------------------------------------------- | 20 | 1 | - | |
| rat | gggtTGGGGTGGGGACAAAAAGGAtgctgtaaggtgtgaaaggagaggaacagtgacaccgtttcttcaggtCATTGGCTCACATGCCTGAGcaaaccatttgcttatccagaccca | |||
| ********************************************************************************************************************* | ||||
| rat | (((((.(((((((..((((..((.((((...(((((((....(((.....(((((((.............))))))).))).))))))).))))..)).))))))))))).))))). | 0.960 -40.12 | ||
| rat | chromosome:15:237258:237374:-1 | intergenic |
sblock6536 [novel_multiarm_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.55/0.74 | 19/22/0.80 | 0.0 0.0 | 0.0 1.0 | 1 4 | 0 0 | 1 2 | 0 0 | 9 23 | 32 4 | 5arm 3arm | 1 1 | nd nd | 0.50 0.05 | 4 1 | 5 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ----------------------------------------------------------------------UCCGCGG------------------------------------- | 4 | novel | ||
| seed | ----------GGAGCUA------------------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S2 | |||
| ---------------------------------------------------------------------TTCCGCGGCCTCTCCCCACCAG----------------------- | 22 | 2 | - | - | |
| ---------------------------------------------------------------------TTCCGCGGCCTCTCCCCAC-------------------------- | 19 | - | 1 | - | |
| ---------AGGAGCTAAGGAAGCTGAGC------------------------------------------------------------------------------------- | 20 | - | - | 1 | |
| ---------------------------------------------------------------------TTCCGCGGCCTCTCCCCACCA------------------------ | 21 | 1 | - | - | |
| rat | tgcagctggAGGAGCTAAGGAAGCTGAGCgtggtggggaggggagcgggtccgcgattctggagacagtTTCCGCGGCCTCTCCCCACCAGgcggccctgaattgccaaatgca | ||||
| ****************************************************************************************************************** | |||||
| rat | .(((..(((..((....(((..(((..((.(((((((((((((.......((((((..(((....)))..)).))))))))))))))))).))))))))...)).)))..))). | 0.770 -58.71 | |||
| rat | chromosome:2:181264131:181264244:1 | intergenic |
sblock9201 [novel_multiarm_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.71/0.85 | 20/22/1.00 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 0 30 10 | 31 6 25 | 5arm 3arm 3arm | 1 1 1 | nd nd nd | 0.20 0.10 0.41 | 2 1 4 | 3 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ----------------------------------------------------------------GCGGUGG------------------------------------------- | 1 | novel | ||
| seed | -----------------------------------------------------------------------------------GGCCACU------------------------ | 1 | novel | ||
| seed | -CGGAGCC---------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T3S2 | T4S2 | |||
| ---------------------------------------------------------------AGCGGTGGCCGCTTCATCCCG------------------------------ | 21 | - | - | 1 | |
| GCGGAGCCCACGCCGCCCAG---------------------------------------------------------------------------------------------- | 20 | - | 1 | - | |
| ----------------------------------------------------------------------------------CGGCCACTGCTCGGTCTGGCTC---------- | 22 | 1 | - | - | |
| rat | GCGGAGCCCACGCCGCCCAGcgccaccagggagggagcggcggccgctgccggtgaaggctaaAGCGGTGGCCGCTTCATCCCGGCCACTGCTCGGTCTGGCTCgggactgcgc | ||||
| ****************************************************************************************************************** | |||||
| rat | (((.(((((..((((((.((((...((.((((.((((((((.(((((((((......)))...)))))).)))))))).))))))....)))).)))..)))..))).)).))) | 1.000 -66.70 | |||
| rat | chromosome:4:170289902:170290015:1 | intergenic |
miRNAunknown_Multihit_loopOverlap_randfoldOK_nonpairedHIGH (2 loci)
block2472842 (miRNA) [miRNAunknown_Multihit_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.001 | no | no | 0.50/0.50 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 30 | -2 | 3arm_loop | 260 | nd | 0.45 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------UAUGUGU------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| --------------------------------------------------GTATGTGTGTGTGTGTGTGC------------------------------ | 20 | 1 | |
| rat | atgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtGTATGTGTGTGTGTGTGTGCatacatatattcacatacacacacatatat | ||
| **************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061506 ENSRNOG00000033159 Rds | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061505 ENSRNOG00000033159 Rds | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061503 ENSRNOG00000033159 Rds | ||
| ...............................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< | ENSRNOT00000063198 ENSRNOG00000041445 | ||
| rat | (((((((((((((((((((.(((((((((((..((..((..((..(((....)))..))..))..))..))))))))))).))))))))))))))))))) | 1.000 -49.90 |
| rat | chromosome:9:9426907:9427006:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000044640|ENSRNOG00000033159 ## Same_strand|Intronic_coding|ENSRNOT00000061503|ENSRNOG00000033159 ## Opposite_strand|Exonic_non-coding|ENSRNOT00000063198|ENSRNOG00000041445 ## ENSRNOG00000033159|protein_coding|Rds|Peripherin-2 (Retinal degeneration slow protein). [Source:UniProtKB/Swiss-Prot;Acc:P17438] ## ENSRNOG00000041445|miRNA|| ## {Repeats: (CA)n 1 68 -1 class=Simple_repeat,(TA)n 2 47 -1 class=Simple_repeat,trf 1 20 0 class=trf,dust 9426937 9426957 0 class=dust,(CA)n 1 20 -1 class=Simple_repeat} |
block2250024 (miRNA) [miRNAunknown_Multihit_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.001 | no | no | 0.48/0.48 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 19 | -4 | 3arm_loop | 227 | nd | 0.33 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------GUGUGUG-------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T2S2 | |||
| ------------------------------------TGTGTGTGTGTGTACATGCAC------------------- | 21 | 1 | |
| rat | tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgTGTGTGTGTGTGTACATGCACacacacacacgcacacaca | ||
| **************************************************************************** | |||
| -------------------------------------------------------------------------------------- | ENSRNOT00000022350 ENSRNOG00000016566 LOC500901 | ||
| -------------------------------------------------------------------------------------- | ENSRNOT00000052227 ENSRNOG00000016566 LOC500901 | ||
| .......<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< | ENSRNOT00000063125 ENSRNOG00000041372 | ||
| rat | .(((((((((((((((((((((((((((..((..((....))..))..))))))))))))))))))))))))))). | 1.000 -51.60 |
| rat | chromosome:7:114813570:114813645:1 | Opposite_strand|Intronic_coding|ENSRNOT00000022350|ENSRNOG00000016566 ## Opposite_strand|Exonic_non-coding|ENSRNOT00000063125|ENSRNOG00000041372 ## ENSRNOG00000041372|miRNA|| ## ENSRNOG00000016566|protein_coding|LOC500901|Protein KIAA1688 homolog (Preoptic regulatory factor 2) (PORF-2) (Fragment). [Source:UniProtKB/Swiss-Prot;Acc:P18890] ## {Repeats: dust 114813651 114813653 0 class=dust,trf 1 14 0 class=trf,(CA)n 2 36 1 class=Simple_repeat,dust 114813570 114813583 0 class=dust,(TG)n 37 50 1 class=Simple_repeat,(CA)n 2 9 1 class=Simple_repeat,trf 28 30 0 class=trf,(TG)n 2 50 1 class=Simple_repeat} |
miRNAunknown_cloningHIGH_multiarm_DicerNOK_Multihit_loopOverlap_randfoldOK (2 loci)
sblock5202 (miRNA) [miRNAunknown_cloningHIGH_multiarm_DicerNOK_Multihit_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.001 | no | no | 0.29/0.40 | 18/25/0.85 | 0.0 0.0 0.0 | 0.0 2.4 0.8 | 2 732 358 | 0 0 0 | 1 10 10 | 0 0 0 | 18 33 18 | 13 -5 15 | 5arm 5arm_loop_3arm 3arm | 10 10 307 | nd nd nd | 0.10 0.11 0.05 | 1 1 1 | 2138 | 10 | 12 | 0 |
| reads | miRBase family seed | |||||||||||
| seed | ----------------------------------GUGAUGU------------------------------------------------------------------------ | 1236 | miR-466c | |||||||||
| seed | ------------------------------------------------------------------------UAUACAU---------------------------------- | 616 | novel | |||||||||
| seed | ---------------------------------UGUGAUG------------------------------------------------------------------------- | 147 | novel | |||||||||
| seed | -------------------------------------------------------------------------AUACAUA--------------------------------- | 73 | novel | |||||||||
| seed | -----------------------------------------------------------------------AUAUACA----------------------------------- | 36 | novel | |||||||||
| seed | -----------------------------------UGAUGUG----------------------------------------------------------------------- | 12 | novel | |||||||||
| seed | ---------------------------------------------------------------------------ACAUACA------------------------------- | 11 | novel | |||||||||
| seed | --------------------------------AUGUGAU-------------------------------------------------------------------------- | 2 | novel | |||||||||
| seed | -------------------UGUGCAU--------------------------------------------------------------------------------------- | 2 | novel | |||||||||
| seed | --------------------------------------------------------------------AGCAUAU-------------------------------------- | 1 | novel | |||||||||
| seed | ----------------------------GUGUAUG------------------------------------------------------------------------------ | 1 | novel | |||||||||
| seed | -------------------------------------AUGUGUG--------------------------------------------------------------------- | 1 | miR-466b | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ---------------------------------TGTGATGTGTGTATGTACATGT---------------------------------------------------------- | 22 | 9 | 6 | 86 | 89 | 75 | 55 | 10 | 17 | 8 | 14 | |
| ---------------------------------TGTGATGTGTGTATGTACATGTGT-------------------------------------------------------- | 24 | 16 | 5 | 124 | 68 | 46 | 29 | 10 | 17 | 8 | 3 | |
| -----------------------------------------------------------------------ATATACATACACACATACACAC-------------------- | 22 | 14 | 9 | 104 | 87 | 31 | 16 | 1 | 2 | 6 | 7 | |
| ---------------------------------TGTGATGTGTGTATGTAC-------------------------------------------------------------- | 18 | 1 | 6 | 75 | 65 | 49 | 16 | 7 | 5 | 7 | 5 | |
| -----------------------------------------------------------------------ATATACATACACACATACACACAC------------------ | 24 | 3 | 3 | 51 | 43 | 27 | 12 | - | 3 | 4 | 1 | |
| ---------------------------------TGTGATGTGTGTATGTACATGTG--------------------------------------------------------- | 23 | 4 | 6 | 31 | 21 | 19 | 17 | 2 | 7 | 3 | - | |
| ---------------------------------TGTGATGTGTGTATGTACATG----------------------------------------------------------- | 21 | 5 | 2 | 24 | 15 | 21 | 12 | 2 | 5 | 6 | 4 | |
| --------------------------------ATGTGATGTGTGTATGTACATGT---------------------------------------------------------- | 23 | 1 | 2 | 33 | 22 | 15 | 12 | 2 | 4 | 2 | - | |
| -----------------------------------------------------------------------ATATACATACACACATACACA--------------------- | 21 | 4 | 3 | 36 | 20 | 10 | 10 | - | - | - | 1 | |
| -----------------------------------------------------------------------ATATACATACACACATACAC---------------------- | 20 | 5 | 1 | 29 | 37 | 6 | 3 | - | - | - | 1 | |
| ---------------------------------TGTGATGTGTGTATGTACA------------------------------------------------------------- | 19 | 3 | 1 | 17 | 10 | 7 | 5 | 5 | - | 1 | 1 | |
| ------------------------------------------------------------------------TATACATACACACATACACAC-------------------- | 21 | 4 | 1 | 18 | 18 | 3 | 4 | - | - | - | - | |
| ---------------------------------TGTGATGTGTGTATGTACAT------------------------------------------------------------ | 20 | 3 | - | 13 | 10 | 9 | 7 | - | - | 3 | - | |
| -----------------------------------------------------------------------ATATACATACACACATACACACA------------------- | 23 | 1 | - | 8 | 10 | 4 | - | - | - | 1 | - | |
| ----------------------------------------------------------------------CATATACATACACACATACACAC-------------------- | 23 | 2 | - | 6 | 5 | 4 | - | - | - | 1 | 2 | |
| --------------------------------ATGTGATGTGTGTATGTAC-------------------------------------------------------------- | 19 | - | - | 5 | 7 | - | 1 | - | - | - | - | |
| --------------------------------ATGTGATGTGTGTATGTACAT------------------------------------------------------------ | 21 | - | 1 | 4 | 4 | - | 1 | - | - | 1 | 1 | |
| --------------------------------ATGTGATGTGTGTATGTACATG----------------------------------------------------------- | 22 | - | - | 2 | 1 | 2 | 4 | 1 | 1 | - | - | |
| ------------------------------------------------------------------------TATACATACACACATACAC---------------------- | 19 | 1 | - | 4 | 2 | 1 | 3 | - | - | - | - | |
| --------------------------------ATGTGATGTGTGTATGTACA------------------------------------------------------------- | 20 | - | - | 2 | 5 | 3 | - | - | - | - | - | |
| --------------------------------------------------------------------------TACATACACACATACACACACAC---------------- | 23 | - | - | 4 | 3 | 3 | - | - | - | - | - | |
| ------------------------------------------------------------------------TATACATACACACATACACACAC------------------ | 23 | - | - | 6 | 2 | 1 | - | - | - | - | - | |
| ----------------------------------------------------------------------CATATACATACACACATACAC---------------------- | 21 | 1 | 2 | 2 | 2 | - | 1 | - | 1 | - | - | |
| ----------------------------------GTGATGTGTGTATGTACATGTGT-------------------------------------------------------- | 23 | - | - | 1 | 2 | 2 | - | - | - | 1 | - | |
| ----------------------------------------------------------------------CATATACATACACACATACACA--------------------- | 22 | - | - | 3 | 1 | 1 | - | - | - | - | - | |
| --------------------------------ATGTGATGTGTGTATGTACATGTG--------------------------------------------------------- | 24 | - | - | 3 | - | 1 | - | - | - | - | - | |
| ------------------------------------------------------------------------TATACATACACACATACACA--------------------- | 20 | - | - | 2 | 1 | 1 | - | - | - | - | - | |
| ---------------------------------TGTGATGTGTGTATGTACATGTGTG------------------------------------------------------- | 25 | - | - | 1 | 1 | 1 | - | 1 | - | - | - | |
| --------------------------------ATGTGATGTGTGTATGTA--------------------------------------------------------------- | 18 | - | - | - | - | 2 | - | 1 | - | - | - | |
| ----------------------------------GTGATGTGTGTATGTACATGT---------------------------------------------------------- | 21 | - | - | - | 2 | - | - | - | - | - | - | |
| ----------------------------------GTGATGTGTGTATGTACAT------------------------------------------------------------ | 19 | - | - | 1 | - | 1 | - | - | - | - | - | |
| ------------------ATGTGCATGTGTGTATGTGAT-------------------------------------------------------------------------- | 21 | - | - | - | 2 | - | - | - | - | - | - | |
| -----------------------------------------------------------------------ATATACATACACACATACACACACA----------------- | 25 | - | - | 1 | - | 1 | - | - | - | - | - | |
| ----------------------------------GTGATGTGTGTATGTACATG----------------------------------------------------------- | 20 | - | - | - | 1 | - | 1 | - | - | - | - | |
| ----------------------------------------------------------------------CATATACATACACACATAC------------------------ | 19 | - | - | - | 1 | - | 1 | - | - | - | - | |
| -------------------------------------------------------------------AAGCATATACATACACACATAC------------------------ | 22 | - | - | 1 | - | - | - | - | - | - | - | |
| -------------------------------TATGTGATGTGTGTATGTACA------------------------------------------------------------- | 21 | - | - | - | - | 1 | - | - | - | - | - | |
| -------------------------------TATGTGATGTGTGTATGTAC-------------------------------------------------------------- | 20 | - | - | - | - | - | 1 | - | - | - | - | |
| ---------------------------TGTGTATGTGATGTGTGTATGT---------------------------------------------------------------- | 22 | - | - | - | 1 | - | - | - | - | - | - | |
| --------------------------------------------------------------------------TACATACACACATACACACACACAC-------------- | 25 | - | - | 1 | - | - | - | - | - | - | - | |
| ------------------------------------GATGTGTGTATGTACATGTGT-------------------------------------------------------- | 21 | - | - | - | - | 1 | - | - | - | - | - | |
| --------------------------------ATGTGATGTGTGTATGTACATGTGT-------------------------------------------------------- | 25 | - | - | - | - | 1 | - | - | - | - | - | |
| ------------------------------------------------------------------------TATACATACACACATACACACA------------------- | 22 | - | - | - | - | - | - | 1 | - | - | - | |
| rat | tgtgtgatgcccctgtgtatgtgcatgtgtgtaTGTGATGTGTGTATGTACATGTGTgtatatgaagaagcATATACATACACACATACACACACacacaggcatacacacac | |||||||||||
| ***************************************************************************************************************** | ||||||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000042430 ENSRNOG00000029235 Sfmbt2 | |||||||||||
| ..............................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000063011 ENSRNOG00000041258 | |||||||||||
| rat | (((((((((((..(((((.((((.((((((((((((.((((((.((((((((....)))))))).....)))))))))))))))))).)))).)))))..))))).)))))). | 1.000 -58.00 | ||||||||||
| rat | chromosome:17:79268723:79268835:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000051529|ENSRNOG00000029235 ## Same_strand|Intronic_coding|ENSRNOT00000042430|ENSRNOG00000029235 ## Same_strand|Exonic_non-coding|ENSRNOT00000063011|ENSRNOG00000041258 ## ENSRNOG00000041258|miRNA|| ## ENSRNOG00000029235|protein_coding|Sfmbt2|Scm-like with four mbt domains 2 Gene [Source:MGI (curated);Acc:Sfmbt2-001] ## {Repeats: dust 79268737 79268760 0 class=dust,trf 32 55 0 class=trf,trf 218 250 0 class=trf,(TG)n 1 60 -1 class=Simple_repeat,trf 4 44 0 class=trf,(CA)n 6 46 -1 class=Simple_repeat,dust 79268778 79268818 0 class=dust,(TG)n 32 60 -1 class=Simple_repeat,(CA)n 1 50 -1 class=Simple_repeat,trf 259 299 0 class=trf} |
sblock5206 (miRNA) [miRNAunknown_cloningHIGH_multiarm_DicerNOK_Multihit_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.001 | no | no | 0.29/0.40 | 18/25/0.85 | 0.0 0.0 0.0 | 0.0 2.4 0.8 | 2 732 358 | 0 0 0 | 1 10 10 | 0 0 0 | 25 40 18 | 13 -5 15 | 5arm 5arm_loop_3arm 3arm | 10 10 307 | nd nd nd | 0.10 0.11 0.05 | 1 1 1 | 2127 | 10 | 12 | 0 |
| reads | miRBase family seed | |||||||||||
| seed | -----------------------------------------GUGAUGU------------------------------------------------------------------------ | 1236 | miR-466c | |||||||||
| seed | -------------------------------------------------------------------------------UAUACAU---------------------------------- | 616 | novel | |||||||||
| seed | ----------------------------------------UGUGAUG------------------------------------------------------------------------- | 147 | novel | |||||||||
| seed | --------------------------------------------------------------------------------AUACAUA--------------------------------- | 73 | novel | |||||||||
| seed | ------------------------------------------------------------------------------AUAUACA----------------------------------- | 36 | novel | |||||||||
| seed | ------------------------------------------UGAUGUG----------------------------------------------------------------------- | 12 | novel | |||||||||
| seed | --------------------------UGUGCAU--------------------------------------------------------------------------------------- | 2 | novel | |||||||||
| seed | ---------------------------------------AUGUGAU-------------------------------------------------------------------------- | 2 | novel | |||||||||
| seed | -----------------------------------------------------------------------------CAUAUAC------------------------------------ | 1 | novel | |||||||||
| seed | -----------------------------------GUGUAUG------------------------------------------------------------------------------ | 1 | novel | |||||||||
| seed | --------------------------------------------AUGUGUG--------------------------------------------------------------------- | 1 | miR-466b | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------TGTGATGTGTGTATGTACATGT---------------------------------------------------------- | 22 | 9 | 6 | 86 | 89 | 75 | 55 | 10 | 17 | 8 | 14 | |
| ----------------------------------------TGTGATGTGTGTATGTACATGTGT-------------------------------------------------------- | 24 | 16 | 5 | 124 | 68 | 46 | 29 | 10 | 17 | 8 | 3 | |
| ------------------------------------------------------------------------------ATATACATACACACATACACAC-------------------- | 22 | 14 | 9 | 104 | 87 | 31 | 16 | 1 | 2 | 6 | 7 | |
| ----------------------------------------TGTGATGTGTGTATGTAC-------------------------------------------------------------- | 18 | 1 | 6 | 75 | 65 | 49 | 16 | 7 | 5 | 7 | 5 | |
| ------------------------------------------------------------------------------ATATACATACACACATACACACAC------------------ | 24 | 3 | 3 | 51 | 43 | 27 | 12 | - | 3 | 4 | 1 | |
| ----------------------------------------TGTGATGTGTGTATGTACATGTG--------------------------------------------------------- | 23 | 4 | 6 | 31 | 21 | 19 | 17 | 2 | 7 | 3 | - | |
| ----------------------------------------TGTGATGTGTGTATGTACATG----------------------------------------------------------- | 21 | 5 | 2 | 24 | 15 | 21 | 12 | 2 | 5 | 6 | 4 | |
| ---------------------------------------ATGTGATGTGTGTATGTACATGT---------------------------------------------------------- | 23 | 1 | 2 | 33 | 22 | 15 | 12 | 2 | 4 | 2 | - | |
| ------------------------------------------------------------------------------ATATACATACACACATACACA--------------------- | 21 | 4 | 3 | 36 | 20 | 10 | 10 | - | - | - | 1 | |
| ------------------------------------------------------------------------------ATATACATACACACATACAC---------------------- | 20 | 5 | 1 | 29 | 37 | 6 | 3 | - | - | - | 1 | |
| ----------------------------------------TGTGATGTGTGTATGTACA------------------------------------------------------------- | 19 | 3 | 1 | 17 | 10 | 7 | 5 | 5 | - | 1 | 1 | |
| -------------------------------------------------------------------------------TATACATACACACATACACAC-------------------- | 21 | 4 | 1 | 18 | 18 | 3 | 4 | - | - | - | - | |
| ----------------------------------------TGTGATGTGTGTATGTACAT------------------------------------------------------------ | 20 | 3 | - | 13 | 10 | 9 | 7 | - | - | 3 | - | |
| ------------------------------------------------------------------------------ATATACATACACACATACACACA------------------- | 23 | 1 | - | 8 | 10 | 4 | - | - | - | 1 | - | |
| -----------------------------------------------------------------------------CATATACATACACACATACACAC-------------------- | 23 | 2 | - | 6 | 5 | 4 | - | - | - | 1 | 2 | |
| ---------------------------------------ATGTGATGTGTGTATGTAC-------------------------------------------------------------- | 19 | - | - | 5 | 7 | - | 1 | - | - | - | - | |
| ---------------------------------------ATGTGATGTGTGTATGTACAT------------------------------------------------------------ | 21 | - | 1 | 4 | 4 | - | 1 | - | - | 1 | 1 | |
| ---------------------------------------ATGTGATGTGTGTATGTACATG----------------------------------------------------------- | 22 | - | - | 2 | 1 | 2 | 4 | 1 | 1 | - | - | |
| -------------------------------------------------------------------------------TATACATACACACATACAC---------------------- | 19 | 1 | - | 4 | 2 | 1 | 3 | - | - | - | - | |
| ---------------------------------------ATGTGATGTGTGTATGTACA------------------------------------------------------------- | 20 | - | - | 2 | 5 | 3 | - | - | - | - | - | |
| -----------------------------------------------------------------------------CATATACATACACACATACAC---------------------- | 21 | 1 | 2 | 2 | 2 | - | 1 | - | 1 | - | - | |
| -------------------------------------------------------------------------------TATACATACACACATACACACAC------------------ | 23 | - | - | 6 | 2 | 1 | - | - | - | - | - | |
| -----------------------------------------GTGATGTGTGTATGTACATGTGT-------------------------------------------------------- | 23 | - | - | 1 | 2 | 2 | - | - | - | 1 | - | |
| -----------------------------------------------------------------------------CATATACATACACACATACACA--------------------- | 22 | - | - | 3 | 1 | 1 | - | - | - | - | - | |
| ---------------------------------------ATGTGATGTGTGTATGTACATGTG--------------------------------------------------------- | 24 | - | - | 3 | - | 1 | - | - | - | - | - | |
| ----------------------------------------TGTGATGTGTGTATGTACATGTGTG------------------------------------------------------- | 25 | - | - | 1 | 1 | 1 | - | 1 | - | - | - | |
| -------------------------------------------------------------------------------TATACATACACACATACACA--------------------- | 20 | - | - | 2 | 1 | 1 | - | - | - | - | - | |
| ---------------------------------------ATGTGATGTGTGTATGTA--------------------------------------------------------------- | 18 | - | - | - | - | 2 | - | 1 | - | - | - | |
| ------------------------------------------------------------------------------ATATACATACACACATACACACACA----------------- | 25 | - | - | 1 | - | 1 | - | - | - | - | - | |
| -----------------------------------------GTGATGTGTGTATGTACAT------------------------------------------------------------ | 19 | - | - | 1 | - | 1 | - | - | - | - | - | |
| -----------------------------------------GTGATGTGTGTATGTACATG----------------------------------------------------------- | 20 | - | - | - | 1 | - | 1 | - | - | - | - | |
| -----------------------------------------------------------------------------CATATACATACACACATAC------------------------ | 19 | - | - | - | 1 | - | 1 | - | - | - | - | |
| -------------------------ATGTGCATGTGTGTATGTGAT-------------------------------------------------------------------------- | 21 | - | - | - | 2 | - | - | - | - | - | - | |
| -----------------------------------------GTGATGTGTGTATGTACATGT---------------------------------------------------------- | 21 | - | - | - | 2 | - | - | - | - | - | - | |
| ----------------------------------------------------------------------------ACATATACATACACACATACAC---------------------- | 22 | - | - | - | - | 1 | - | - | - | - | - | |
| ---------------------------------------ATGTGATGTGTGTATGTACATGTGT-------------------------------------------------------- | 25 | - | - | - | - | 1 | - | - | - | - | - | |
| -------------------------------------------------------------------------------TATACATACACACATACACACA------------------- | 22 | - | - | - | - | - | - | 1 | - | - | - | |
| --------------------------------------TATGTGATGTGTGTATGTAC-------------------------------------------------------------- | 20 | - | - | - | - | - | 1 | - | - | - | - | |
| -------------------------------------------GATGTGTGTATGTACATGTGT-------------------------------------------------------- | 21 | - | - | - | - | 1 | - | - | - | - | - | |
| --------------------------------------TATGTGATGTGTGTATGTACA------------------------------------------------------------- | 21 | - | - | - | - | 1 | - | - | - | - | - | |
| ----------------------------------TGTGTATGTGATGTGTGTATGT---------------------------------------------------------------- | 22 | - | - | - | 1 | - | - | - | - | - | - | |
| rat | tggggttcatgtgatgaccttatgtatgtgcatgtgtgtaTGTGATGTGTGTATGTACATGTGTgtatatgaagaaacATATACATACACACATACACACACataggctctctctctctc | |||||||||||
| ************************************************************************************************************************ | ||||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000042430 ENSRNOG00000029235 Sfmbt2 | |||||||||||
| ...................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>................. | ENSRNOT00000062921 ENSRNOG00000041168 | |||||||||||
| rat | .((((.......((.((.(((((((.((((.((((((((((((.((((((.((((((((....)))))))).....)))))))))))))))))).)))).))))))).))))...)))). | 0.700 -45.30 | ||||||||||
| rat | chromosome:17:79283713:79283832:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000051529|ENSRNOG00000029235 ## Same_strand|Intronic_coding|ENSRNOT00000042430|ENSRNOG00000029235 ## Same_strand|Exonic_non-coding|ENSRNOT00000062921|ENSRNOG00000041168 ## ENSRNOG00000041168|miRNA|| ## ENSRNOG00000029235|protein_coding|Sfmbt2|Scm-like with four mbt domains 2 Gene [Source:MGI (curated);Acc:Sfmbt2-001] ## {Repeats: trf 4 44 0 class=trf,(CATATA)n 4 52 -1 class=Simple_repeat,(CATATA)n 8 48 -1 class=Simple_repeat,dust 79283768 79283808 0 class=dust} |
miRNAunknown_lenNOK_Multihit (2 loci)
block581372 (miRNA) [miRNAunknown_lenNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.100 | no | no | 0.50/0.53 | 19/20/0.67 | 0.0 | 0.7 | 3 | 0 | 3 | 0 | 31 | 5 | 5arm | 11 | nd | 0.25 | 2 | 3 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | --------------------------------UGGCUCU--------------------------------------------------------------------------------- | 3 | novel | ||
| len | cloning frequencies | ||||
| T2S2 | T3S1 | T5S2 | |||
| -------------------------------ATGGCTCTCACTGAAGACCA--------------------------------------------------------------------- | 20 | 1 | - | 1 | |
| -------------------------------ATGGCTCTCACTGAAGACC---------------------------------------------------------------------- | 19 | - | 1 | - | |
| rat | agttgcagattgttataagacaccatttagcATGGCTCTCACTGAAGACCAgcagtcgtactgtagctgttggtttcaagcagacgcctaaagagctgtcttcctgtggtttgttggctc | ||||
| ************************************************************************************************************************ | |||||
| .....................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>................... | ENSRNOT00000063272 ENSRNOG00000041519 | ||||
| rat | (((((((((((.....((((((...(((.....((((((..((..(((((((((((.........)))))))))))..)).))).)))...)))..)))))).....))))))).)))). | 0.680 -31.20 | |||
| rat | chromosome:16:61728499:61728618:1 | Same_strand|Boundary_non-coding|ENSRNOT00000063272|ENSRNOG00000041519 ## ENSRNOG00000041519|miRNA|| |
block2704646 (miRNA) [miRNAunknown_lenNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.292 | no | no | 0.32/0.32 | 25/25/0.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 7 | 7 | 5arm | 1296 | nd | 0.28 | 2 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------UGAUGAU------------------------------------------------------------------ | 1 | novel |
| seed | -----------------------------------UGAUGAU--------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| -------ATGATGATGATGATGATGATGATGA------------------------------------------------- | 25 | 1 | |
| ----------------------------------ATGATGATGATGATGATGATGATGA---------------------- | 25 | 1 | |
| rat | gataataATGATGATGATGATGATGATGATGAtgATGATGATGATGATGATGATGATGAtgatttcaaggatcatttctct | ||
| ********************************************************************************* | |||
| <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<........................ | ENSRNOT00000062198 ENSRNOG00000040445 | ||
| rat | ((....((((((..(((.(((.((.((.((.((.((.((....)).)).)).)).)).)).))))))...))))))..)). | 0.680 -11.60 |
| rat | chromosome:X:52322968:52323048:-1 | Opposite_strand|Exonic_non-coding|ENSRNOT00000062198|ENSRNOG00000040445 ## ENSRNOG00000040445|miRNA|| ## {Repeats: trf 2 57 0 class=trf,dust 52322987 52323041 0 class=dust,(CAT)n 2 65 -1 class=Simple_repeat,(CAT)n 3 58 -1 class=Simple_repeat} |
miRNAunknown_lenNOK_Multihit_bulgeHIGH (2 loci)
block1969405 (miRNA) [miRNAunknown_lenNOK_Multihit_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.120 | no | no | 0.50/0.50 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 16 | 1 | 5arm | 18 | nd | 0.22 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------GCGAGUA----------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T2S1 | |||
| ----------------GGCGAGTATCTCTTTGAG------------------------------------------------- | 18 | 1 | |
| rat | gccccaggtatctgtgGGCGAGTATCTCTTTGAGtgcctcactcttaagctcaactcagaggcctctgcgccttccaaggggc | ||
| *********************************************************************************** | |||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>............ | ENSRNOT00000054608 ENSRNOG00000036500 | ||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>................................. | ENSRNOT00000006164 ENSRNOG00000004662 | ||
| rat | (((((.((.......(((((((....(((((((((..................)))))))))...)).))))).))..))))) | 0.610 -27.37 |
| rat | chromosome:6:115677153:115677235:-1 | Same_strand|Exonic_non-coding|ENSRNOT00000006164|ENSRNOG00000004662 ## ENSRNOG00000036500|miRNA|| ## ENSRNOG00000004662|pseudogene|| |
| Back to summary page | other hairpins: | Page 1 | Jump 10 pages back | Previous page | Page 31132 | Next page | Jump 10 pages forward | Page 31204 |
©2008 InteRNA Genomics B.V.