other hairpins
miRNAunknown_lenNOK_cloningOK_multiarm_DicerNOK_randfoldOK (2 loci)
sblock6364 (miRNA) [miRNAunknown_lenNOK_cloningOK_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.003 | no | no | 0.53/0.59 | 18/24/0.66 | 0.0 0.8 | 0.2 0.5 | 18 4 | 0 0 | 6 3 | 0 0 | 18 17 | 9 6 | 5arm 3arm | 1 1 | nd nd | 0.20 0.09 | 2 1 | 38 | 7 | -3 | 1 |
| reads | miRBase family seed | ||||||||
| seed | -------------------GGCAGUG------------------------------------------------------------------------ | 34 | miR-34a/34c/449a | ||||||
| seed | -------------------------------------------------------------GUGGCUA------------------------------ | 3 | novel | ||||||
| seed | ------------------------------------------------------------AGUGGCU------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T3S2 | T4S2 | T5S1 | |||
| ------------------AGGCAGTGCATTGCTAGCTG------------------------------------------------------------ | 20 | 2 | - | - | 4 | 10 | 1 | 2 | |
| ------------------AGGCAGTGCATTGCTAGCT------------------------------------------------------------- | 19 | - | 1 | - | 2 | 4 | - | 2 | |
| ------------------AGGCAGTGCATTGCTAGC-------------------------------------------------------------- | 18 | - | 1 | - | 1 | 1 | - | - | |
| ------------------------------------------------------------AGTGGCTAGCTGCACTACCCT----------------- | 21 | 1 | - | - | 1 | - | - | - | |
| ------------------AGGCAGTGCATTGCTAGCTGG----------------------------------------------------------- | 21 | - | - | - | - | 1 | - | - | |
| -----------------------------------------------------------CAGTGGCTAGCTGCACTACCCT----------------- | 22 | - | - | 1 | - | - | - | - | |
| ------------------AGGCAGTGCATTGCTAGCTGGC---------------------------------------------------------- | 22 | 1 | - | - | - | - | - | - | |
| ------------------------------------------------------------AGTGGCTAGCTGCACTACC------------------- | 19 | - | - | - | 1 | - | - | - | |
| ------------------AGGCAGTGCATTGCTAGCTGGCTG-------------------------------------------------------- | 24 | - | - | - | 1 | - | - | - | |
| rat | agcgtgggtgtgtcagacAGGCAGTGCATTGCTAGCTGgctgttagaacttcgtcccaacagtggctagctgcactaccctctgctgcacttagaagc | ||||||||
| ************************************************************************************************** | |||||||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>. | ENSRNOT00000054547 ENSRNOG00000036435 | ||||||||
| rat | .((.(((((((..((((..((.((((((..(((((((.((((((.((......))..))))))))))))))))))).)).))))..)))))))...)) | 1.000 -39.60 | |||||||
| rat | chromosome:2:44416739:44416836:1 | Same_strand|Exonic_non-coding|ENSRNOT00000054547|ENSRNOG00000036435 ## ENSRNOG00000036435|miRNA|| |
miRNAunknown_lenNOK_loopOverlap (2 loci)
block993126 (miRNA) [miRNAunknown_lenNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.396 | no | no | 0.36/0.36 | 25/25/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 25 | -3 | 3arm_loop | 1 | nd | 0.24 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------CUUUGUU------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| ------------------------------------------------CCTTTGTTTTTACAGCTTACAGTCA------------------------- | 25 | 1 | |
| rat | gctgggttttcactggctctgacacttacagggtttaggagcagtcttCCTTTGTTTTTACAGCTTACAGTCAggctttggctagatcaggtaccagt | ||
| ************************************************************************************************** | |||
| ........................................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< | ENSRNOT00000053681 ENSRNOG00000035558 | ||
| rat | (((((.......(((((((((((.......((((((((((((((.......))))))))).)))))...))))).....))))))........))))) | 0.580 -24.46 |
| rat | chromosome:1:115954523:115954620:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000053681|ENSRNOG00000035558 ## ENSRNOG00000035558|miRNA|| |
block2186335 (miRNA) [miRNAunknown_lenNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.448 | no | no | 0.58/0.63 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 15 19 | 1 -3 | 5arm 5arm_loop | 9 9 | nd nd | 0.26 0.42 | 3 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----------------GAAGCAC----------------------------------------------------------- | 1 | novel | |
| seed | --------------------CACGACU------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T3S2 | |||
| -------------------GCACGACTAGGCCTCTGTG-------------------------------------------- | 19 | - | 1 | |
| ---------------TGAAGCACGACTAGGCCTC------------------------------------------------ | 19 | 1 | - | |
| rat | ttgagcgcctcattcTGAAGCACGACTAGGCCTCTGTGccttccaaggggctccctcctctgctctacaccggccgcctcag | |||
| ********************************************************************************** | ||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000052297 ENSRNOG00000039298 RGD1560687_predicted | |||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>........................................... | ENSRNOT00000054635 ENSRNOG00000036528 | |||
| rat | .((((((((.......((.(((.((...(((((((..........)))))))...))...)))))......))).)).))). | 0.590 -20.62 | ||
| rat | chromosome:7:13799872:13799953:1 | Same_strand|Exonic_non-coding|ENSRNOT00000054635|ENSRNOG00000036528 ## ENSRNOG00000039298|protein_coding|RGD1560687_predicted| ## ENSRNOG00000036528|miRNA|| |
miRNAunknown_lenNOK_loopOverlap_nonpairedHIGH_bulgeHIGH (2 loci)
block1131276 (miRNA) [miRNAunknown_lenNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.464 | no | no | 0.63/0.65 | 19/20/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 4 8 | 2 -3 | 5arm 5arm_loop | 6 6 | nd nd | 0.47 0.45 | 5 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------GUCCACC---------------------------------------------- | 1 | novel | |
| seed | -----GCAAGUC-------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T2S2 | |||
| ----GGCAAGTCCACCACAACCG--------------------------------------- | 19 | - | 1 | |
| --------AGTCCACCACAACCGGCCAC---------------------------------- | 20 | 1 | - | |
| rat | ttctGGCAAGTCCACCACAACCGGCCACctgctctacaaatgtgatggaatcgataaaagaa | |||
| ************************************************************** | ||||
| .................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000063218 ENSRNOG00000041465 | |||
| rat | .(((......((((.((((...(((.....))).......)))).)))).........))). | 0.910 -9.26 | ||
| rat | chromosome:2:19568194:19568255:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000063218|ENSRNOG00000041465 ## ENSRNOG00000041465|miRNA|| |
block2203384 (miRNA) [miRNAunknown_lenNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.106 | no | no | 0.39/0.39 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 20 | -4 | 5arm_loop | 8 | nd | 0.39 | 5 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------ACAAAUG---------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| --------------------TACAAATGTGGTGGAATC------------------------------------------------ | 18 | 1 | |
| rat | ccacaactggccacctgatcTACAAATGTGGTGGAATCaacaaaaaaaaccatcgaaaagtttgaaaaggaggctgctgagatggg | ||
| ************************************************************************************** | |||
| ...>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.... | ENSRNOT00000063371 ENSRNOG00000041618 | ||
| rat | (((.....((((.(((......(((((.((((((...............))))))....)))))...))).)))).......))). | 0.890 -18.56 |
| rat | chromosome:7:37002753:37002838:1 | Same_strand|Exonic_non-coding|ENSRNOT00000063371|ENSRNOG00000041618 ## ENSRNOG00000041618|miRNA|| |
miRNAunknown_lenNOK_multiarm_DicerNOK_loopOverlap_bulgeHIGH (2 loci)
sblock11851 (miRNA) [miRNAunknown_lenNOK_multiarm_DicerNOK_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.344 | no | no | 0.32/0.41 | 18/25/0.25 | 0.0 0.0 | 3.7 0.0 | 3 1 | 0 0 | 2 1 | 0 0 | 32 29 | -7 -1 | 5arm_loop_3arm 3arm | 8 8 | 59 35 | 0.28 0.26 | 2 4 | 4 | 3 | 2 | -2 |
| reads | miRBase family seed | ||||
| seed | ---------------------------------ACAAAUG---------------------------------------------------------------- | 3 | novel | ||
| seed | ---------------------------------------------------------GAACCAU---------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T3S2 | T5S2 | |||
| --------------------------------TACAAATGTGGTGGAATCGACAAAA----------------------------------------------- | 25 | - | - | 1 | |
| --------------------------------------------------------AGAACCATTGAAAAGTTTG----------------------------- | 19 | 1 | - | - | |
| --------------------------------TACAAATGTGGTGGAATC------------------------------------------------------ | 18 | - | 1 | - | |
| --------------------------------TACAAATGTGGTGGAATCGACA-------------------------------------------------- | 22 | - | 1 | - | |
| rat | ccggcaagtccaccacaaccggccacctgatcTACAAATGTGGTGGAATCGACAAAAGAACCATTGAAAAGTTTGagaaggaggctgcggaggcaagtataagg | ||||
| ******************************************************************************************************** | |||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++ | ENSRNOT00000013608 ENSRNOG00000009439 Eef1a1 | ||||
| ...............>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>................. | ENSRNOT00000063162 ENSRNOG00000041409 | ||||
| rat | ((.((..(((..((.....(((((.(((..(((.(((((.((((((..((.......)).))))))....))))))))))).))))).)).)))..))....)) | 0.880 -23.70 | |||
| rat | chromosome:8:83465660:83465763:-1 | Same_strand|Exonic_non-coding|ENSRNOT00000063162|ENSRNOG00000041409 ## Same_strand|Exonic_coding|ENSRNOT00000013608|ENSRNOG00000009439 ## ENSRNOG00000041409|miRNA|| ## ENSRNOG00000009439|protein_coding|Eef1a1|Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1 A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu). [Source:UniProtKB/Swiss-Prot;Acc:P62630] |
sblock12836 (miRNA) [miRNAunknown_lenNOK_multiarm_DicerNOK_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.078 | no | no | 0.32/0.41 | 18/25/0.25 | 0.0 0.0 | 3.7 0.0 | 3 1 | 0 0 | 2 1 | 0 0 | 30 31 | -7 -1 | 5arm_loop_3arm 3arm | 8 8 | nd nd | 0.28 0.26 | 2 4 | 4 | 3 | 2 | -2 |
| reads | miRBase family seed | ||||
| seed | -------------------------------ACAAAUG------------------------------------------------------------------ | 3 | novel | ||
| seed | -------------------------------------------------------GAACCAU------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T3S2 | T5S2 | |||
| ------------------------------TACAAATGTGGTGGAATCGACAAAA------------------------------------------------- | 25 | - | - | 1 | |
| ------------------------------TACAAATGTGGTGGAATCGACA---------------------------------------------------- | 22 | - | 1 | - | |
| ------------------------------------------------------AGAACCATTGAAAAGTTTG------------------------------- | 19 | 1 | - | - | |
| ------------------------------TACAAATGTGGTGGAATC-------------------------------------------------------- | 18 | - | 1 | - | |
| rat | ggcaagtccaccacaaccggccacctgatcTACAAATGTGGTGGAATCGACAAAAGAACCATTGAAAAGTTTGagaaggaggctgcggagatgggaaaaggctc | ||||
| ******************************************************************************************************** | |||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000017180 ENSRNOG00000012863 LOC364172 | ||||
| .............>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>............. | ENSRNOT00000063327 ENSRNOG00000041574 | ||||
| rat | (((...(((........(((((.(((..(((.(((((.((((((..((.......)).))))))....))))))))))).)))))........)))....))). | 0.990 -27.49 | |||
| rat | chromosome:X:156022934:156023037:1 | Same_strand|Exonic_coding|ENSRNOT00000017180|ENSRNOG00000012863 ## Same_strand|Exonic_non-coding|ENSRNOT00000063327|ENSRNOG00000041574 ## ENSRNOG00000041574|miRNA|| ## ENSRNOG00000012863|protein_coding|LOC364172| |
miRNAunknown_lenNOK_multiarm_DicerOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH (2 loci)
sblock583 (miRNA) [miRNAunknown_lenNOK_multiarm_DicerOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.466 | no | no | 0.50/0.63 | 18/23/0.40 | 0.0 0.5 0.0 0.0 | 0.0 2.0 0.0 0.0 | 1 2 1 1 | 0 0 0 0 | 1 2 1 1 | 0 0 0 0 | 14 30 15 11 | 0 -22 3 7 | 5arm 5arm_loop_3arm 3arm 3arm | 18 18 18 18 | nd nd nd nd | 0.33 0.57 0.42 0.42 | 4 7 4 4 | 5 | 3 | 2 | 2 |
| reads | miRBase family seed | ||||
| seed | --------------------------------CGCCUCA------------------------------------- | 1 | novel | ||
| seed | -------------------------------GCGCCUC-------------------------------------- | 1 | novel | ||
| seed | ---------------GCGAGUA------------------------------------------------------ | 1 | novel | ||
| seed | -----------------------------------------------CACGACU---------------------- | 1 | novel | ||
| seed | -------------------------------------------GAAGCAC-------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T2S2 | T3S2 | |||
| --------------GGCGAGTATCTCTTTGAG-------------------------------------------- | 18 | 1 | - | - | |
| ------------------------------AGCGCCTCACTCTGAAGCAC-------------------------- | 20 | 1 | - | - | |
| -------------------------------GCGCCTCACTCTGAAGCACGACT---------------------- | 23 | - | 1 | - | |
| ------------------------------------------TGAAGCACGACTAGGCCTC--------------- | 19 | - | 1 | - | |
| ----------------------------------------------GCACGACTAGGCCTCTGTG----------- | 19 | - | - | 1 | |
| rat | cccaggcatctctgGGCGAGTATCTCTTTGAGCGCCTCACTCTGAAGCACGACTAGGCCTCTGTGccttccaaggg | ||||
| **************************************************************************** | |||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000028315 ENSRNOG00000020843 LOC364392 | ||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.......... | ENSRNOT00000054422 ENSRNOG00000036301 | ||||
| rat | (((((((((....((((.(((....(((((((.......))).))))....)))..))))..)))))).....))) | 0.550 -21.20 | |||
| rat | chromosome:1:95929384:95929459:-1 | Same_strand|Exonic_coding|ENSRNOT00000028315|ENSRNOG00000020843 ## Same_strand|Exonic_non-coding|ENSRNOT00000054422|ENSRNOG00000036301 ## ENSRNOG00000036301|miRNA|| ## ENSRNOG00000020843|protein_coding|LOC364392|Ferritin light chain 1 (Ferritin L subunit 1). [Source:UniProtKB/Swiss-Prot;Acc:P02793] |
sblock9838 (miRNA) [miRNAunknown_lenNOK_multiarm_DicerOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.466 | no | no | 0.50/0.63 | 18/23/0.40 | 0.0 0.5 0.0 0.0 | 0.0 2.0 0.0 0.0 | 1 2 1 1 | 0 0 0 0 | 1 2 1 1 | 0 0 0 0 | 14 30 15 11 | 0 -22 3 7 | 5arm 5arm_loop_3arm 3arm 3arm | 18 18 18 18 | nd nd nd nd | 0.33 0.57 0.42 0.42 | 4 7 4 4 | 5 | 3 | 2 | 2 |
| reads | miRBase family seed | ||||
| seed | --------------------------------CGCCUCA------------------------------------- | 1 | novel | ||
| seed | -------------------------------GCGCCUC-------------------------------------- | 1 | novel | ||
| seed | ---------------GCGAGUA------------------------------------------------------ | 1 | novel | ||
| seed | -----------------------------------------------CACGACU---------------------- | 1 | novel | ||
| seed | -------------------------------------------GAAGCAC-------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T2S2 | T3S2 | |||
| ------------------------------AGCGCCTCACTCTGAAGCAC-------------------------- | 20 | 1 | - | - | |
| --------------GGCGAGTATCTCTTTGAG-------------------------------------------- | 18 | 1 | - | - | |
| -------------------------------GCGCCTCACTCTGAAGCACGACT---------------------- | 23 | - | 1 | - | |
| ------------------------------------------TGAAGCACGACTAGGCCTC--------------- | 19 | - | 1 | - | |
| ----------------------------------------------GCACGACTAGGCCTCTGTG----------- | 19 | - | - | 1 | |
| rat | cccaggcatctctgGGCGAGTATCTCTTTGAGCGCCTCACTCTGAAGCACGACTAGGCCTCTGTGccttccaaggg | ||||
| **************************************************************************** | |||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000044711 ENSRNOG00000031506 Ftl1 | ||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.......... | ENSRNOT00000054579 ENSRNOG00000036471 | ||||
| rat | (((((((((....((((.(((....(((((((.......))).))))....)))..))))..)))))).....))) | 0.550 -21.20 | |||
| rat | chromosome:5:152846646:152846721:1 | Same_strand|Exonic_non-coding|ENSRNOT00000044711|ENSRNOG00000031506 ## Same_strand|Exonic_coding|ENSRNOT00000044711|ENSRNOG00000031506 ## ENSRNOG00000036471|miRNA|| ## ENSRNOG00000031506|protein_coding|Ftl1|Ferritin light chain 1 (Ferritin L subunit 1). [Source:UniProtKB/Swiss-Prot;Acc:P02793] |
miRNAunknown_lenNOK_nonpairedHIGH (2 loci)
block1348807 (miRNA) [miRNAunknown_lenNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.015 | no | no | 0.47/0.47 | 19/19/0.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 19 | 10 | 3arm | 2 | nd | 0.32 | 2 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------AGUACCC------------------------------ | 2 | novel |
| len | cloning frequencies | ||
| T2S1 | |||
| ----------------------------------------------------------GAGTACCCAGACAGAATCA------------------- | 19 | 2 | |
| rat | cctgggtggggggactgggtctgggatgggtaccctccttatcagcaagatccgggagGAGTACCCAGACAGAATCAtgaacaccttcagtgtggt | ||
| ************************************************************************************************ | |||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000013863 ENSRNOG00000010170 Tubb4 | ||
| .............................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< | ENSRNOT00000063246 ENSRNOG00000041493 | ||
| rat | ((....((..((...((..((((...(((((((((((((.(((.....)))..)))))).)))))))..))))..))......))..))....)). | 0.800 -38.40 |
| rat | chromosome:3:3388023:3388118:-1 | Same_strand|Exonic_coding|ENSRNOT00000013863|ENSRNOG00000010170 ## Opposite_strand|Exonic_non-coding|ENSRNOT00000063246|ENSRNOG00000041493 ## ENSRNOG00000041493|miRNA|| ## ENSRNOG00000010170|protein_coding|Tubb4|Tubulin beta-2C chain. [Source:UniProtKB/Swiss-Prot;Acc:Q6P9T8] |
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