other hairpins
novel_Multihit_shortStem_5varHIGH_nonpairedHIGH (2 loci)
block2937200 [novel_Multihit_shortStem_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.567 | no | no | 0.68/0.70 | 20/22/1.00 | 1.3 | 0.0 | 3 | 0 | 2 | 0 | 3 | 33 | 5arm | 11 | nd | 0.50 | 3 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------CCGCAGU------------------------------------------------------------------------------- | 1 | novel | |
| seed | ----GUCCGCA------------------------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ------CCGCAGU---------------------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S1 | T5S1 | |||
| -----TCCGCAGTCCGCAGTCCGCA---------------------------------------------------------------------------------------- | 20 | 1 | - | |
| --------------------------TCCGCAGTCCGCAGTCCGCA------------------------------------------------------------------- | 20 | 1 | - | |
| ---AGTCCGCAGTCCGCAGTCCGCA---------------------------------------------------------------------------------------- | 22 | - | 1 | |
| rat | cgcAGTCCGCAGTCCGCAGTCCGCAgTCCGCAGTCCGCAGTCCGCAgtcccagggaggggctgcctccctacttcgtgttgcagtggtggcaacagtctgcctgcctaaatgc | |||
| ***************************************************************************************************************** | ||||
| rat | .(((....((((...((((...((...((((.....((((..((.(((...(((((((.....)))))))))).))..)))).))))..))......)))))))).....))) | 0.410 -38.50 | ||
| rat | chromosome:X:12668493:12668605:1 | intergenic ## {Repeats: dust 12668465 12668542 0 class=dust,trf 5 82 0 class=trf} |
novel_Multihit_shortStem_loopOverlap_randfoldOK (2 loci)
block962491 [novel_Multihit_shortStem_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.40/0.43 | 20/21/1.00 | 0.0 | 0.5 | 2 | 0 | 1 | 0 | 4 | -4 | 3arm_loop | 17 | nd | 0.30 | 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------GAUGUUG----------------- | 2 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----------------------TGATGTTGGACTTTCACTGT----- | 20 | 1 | |
| ----------------------TGATGTTGGACTTTCACTGTG---- | 21 | 1 | |
| rat | ctggcacagtgtgtccacccacTGATGTTGGACTTTCACTGTGgtag | ||
| *********************************************** | |||
| rat | (((.(((((((.(((((...((....)))))))...))))))).))) | 1.000 -20.00 |
| rat | chromosome:1:51429949:51429995:1 | intergenic |
block964219 [novel_Multihit_shortStem_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.40/0.43 | 20/21/1.00 | 0.0 | 0.5 | 2 | 0 | 1 | 0 | 4 | -4 | 3arm_loop | 17 | nd | 0.30 | 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------GAUGUUG----------------- | 2 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----------------------TGATGTTGGACTTTCACTGT----- | 20 | 1 | |
| ----------------------TGATGTTGGACTTTCACTGTG---- | 21 | 1 | |
| rat | ctggcacagtgtgtccacccacTGATGTTGGACTTTCACTGTGgtag | ||
| *********************************************** | |||
| --------------------------------------------------------- | ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted | ||
| rat | (((.(((((((.(((((...((....)))))))...))))))).))) | 1.000 -20.00 |
| rat | chromosome:1:52052224:52052270:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000048246|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
novel_cloningHIGH_Multihit_nonpairedHIGH_bulgeHIGH (2 loci)
block845587 [novel_cloningHIGH_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.195 | no | no | 0.35/0.39 | 18/23/0.98 | 0.0 0.0 | 0.0 0.0 | 45 1 | 0 0 | 3 1 | 0 0 | 18 7 | 6 17 | 3arm 3arm | 19 22 | nd nd | 0.35 0.39 | 4 4 | 52 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | --------------------------------------------------------------AGCACGU--------------------------------- | 51 | novel | ||
| seed | -------------------------------------------------------------------------UGUUACA---------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T3S1 | T5S1 | |||
| -------------------------------------------------------------TAGCACGTCTATTGTTACAAAGT------------------ | 23 | 4 | 1 | 45 | |
| ------------------------------------------------------------------------TTGTTACAAAGTAGTCCACTGTC------- | 23 | - | - | 1 | |
| -------------------------------------------------------------TAGCACGTCTATTGTTAC----------------------- | 18 | - | - | 1 | |
| rat | tccactgttggagtacctcaagtataacaaagacctctactattgtacaacccccttgtcaTAGCACGTCTATTGTTACAAAGTagtccactgtcaaaggac | ||||
| ****************************************************************************************************** | |||||
| rat | (((..((.((((.(((........((((((((((.....(((.((.((((.....)))))))))...)))).))))))....))).))))....))..))). | 0.660 -18.00 | |||
| rat | chromosome:1:50784121:50784222:-1 | intergenic |
block845633 [novel_cloningHIGH_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.195 | no | no | 0.35/0.39 | 18/23/0.98 | 0.0 0.0 | 0.0 0.0 | 45 1 | 0 0 | 3 1 | 0 0 | 18 7 | 6 17 | 3arm 3arm | 19 22 | nd nd | 0.35 0.39 | 4 4 | 52 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | --------------------------------------------------------------AGCACGU--------------------------------- | 51 | novel | ||
| seed | -------------------------------------------------------------------------UGUUACA---------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T3S1 | T5S1 | |||
| -------------------------------------------------------------TAGCACGTCTATTGTTACAAAGT------------------ | 23 | 4 | 1 | 45 | |
| ------------------------------------------------------------------------TTGTTACAAAGTAGTCCACTGTC------- | 23 | - | - | 1 | |
| -------------------------------------------------------------TAGCACGTCTATTGTTAC----------------------- | 18 | - | - | 1 | |
| rat | tccactgttggagtacctcaagtataacaaagacctctactattgtacaacccccttgtcaTAGCACGTCTATTGTTACAAAGTagtccactgtcaaaggac | ||||
| ****************************************************************************************************** | |||||
| rat | (((..((.((((.(((........((((((((((.....(((.((.((((.....)))))))))...)))).))))))....))).))))....))..))). | 0.660 -18.00 | |||
| rat | chromosome:1:50785936:50786037:-1 | intergenic |
novel_cloningHIGH_multiarm (2 loci)
block1973461 [novel_cloningHIGH_multiarm]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.132 | no | no | 0.38/0.50 | 18/26/0.77 | 0.0 0.0 | 0.0 0.0 | 1 25 | 0 0 | 1 6 | 0 0 | 53 27 | -15 0 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.50 0.23 | 8 2 | 57 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | -----------------------------------------------------------------UCGCUGG----------------------------------------- | 38 | novel | |||||
| seed | ------------------------------------------------------------CAAAUUC---------------------------------------------- | 15 | novel | |||||
| seed | ---------------------------------------------------------------AUUCGCU------------------------------------------- | 1 | novel | |||||
| seed | ----------------------------------------------------------------------GGACUCA------------------------------------ | 1 | novel | |||||
| seed | ------------------------------------------------------AACAAUC---------------------------------------------------- | 1 | novel | |||||
| seed | -------------------------------------------------------------------GCUGGAC--------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T4S1 | T5S1 | T5S2 | |||
| ----------------------------------------------------------------TTCGCTGGACTCATTTTGTCTC--------------------------- | 22 | 2 | 2 | 1 | 1 | 25 | 1 | |
| -----------------------------------------------------------TCAAATTCGCTGGACTCATTTTG------------------------------- | 23 | 1 | - | - | - | 4 | - | |
| -----------------------------------------------------------TCAAATTCGCTGGACTCA------------------------------------ | 18 | 1 | - | - | - | 4 | - | |
| -----------------------------------------------------------TCAAATTCGCTGGACTCATTTTGT------------------------------ | 24 | 1 | - | - | - | 2 | - | |
| -----------------------------------------------------------TCAAATTCGCTGGACTCATTTTGTC----------------------------- | 25 | - | - | - | - | 2 | - | |
| ----------------------------------------------------------------TTCGCTGGACTCATTTTGTC----------------------------- | 20 | 1 | - | - | - | 1 | - | |
| ----------------------------------------------------------------TTCGCTGGACTCATTTTGTCTCCCCT----------------------- | 26 | - | - | - | - | 2 | - | |
| ----------------------------------------------------------------TTCGCTGGACTCATTTTG------------------------------- | 18 | - | - | - | - | 2 | - | |
| ---------------------------------------------------------------------TGGACTCATTTTGTCTCCC------------------------- | 19 | - | 1 | - | - | - | - | |
| ------------------------------------------------------------------CGCTGGACTCATTTTGTCTC--------------------------- | 20 | - | - | - | - | 1 | - | |
| -----------------------------------------------------GAACAATCAAATTCGCTG------------------------------------------ | 18 | - | - | - | - | 1 | - | |
| --------------------------------------------------------------AATTCGCTGGACTCATTTTGTCTC--------------------------- | 24 | - | - | - | - | 1 | - | |
| rat | agatgaccagacatggttcaactcaagatgggaaataggagcaagaaccccaggaacaatcaaaTTCGCTGGACTCATTTTGTCTCcccttgggagtcatcggactggtttct | |||||||
| ***************************************************************************************************************** | ||||||||
| rat | (((.((((((...((((....((((((..((((.((((((....((...(((((((........))).))))..)).)))))).))))))))))....))))..))))))))) | 0.740 -30.50 | ||||||
| rat | chromosome:6:122575528:122575640:-1 | intergenic |
sblock8081 [novel_cloningHIGH_multiarm]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.192 | no | no | 0.42/0.58 | 18/24/0.82 | 0.0 0.0 0.0 0.0 0.3 1.0 0.0 | 0.0 0.0 0.0 0.0 0.0 0.0 0.5 | 10 17 1 1 3 2 2 | 0 0 0 0 0 0 0 | 5 4 1 1 3 1 1 | 0 0 0 0 0 0 0 | 0 13 29 38 45 50 11 | 36 25 9 1 -6 -12 -4 | 5arm 5arm 5arm 5arm 5arm_loop 5arm_loop_3arm 3arm_loop | 1 1 1 1 1 1 1 | nd nd nd nd nd nd nd | 1.00 0.65 0.30 0.47 0.68 0.78 0.42 | 22 9 2 6 7 9 6 | 50 | 8 | na | na |
| reads | miRBase family seed | |||||||||
| seed | --------------CUCAUGU----------------------------------------------------------------------------- | 21 | novel | |||||||
| seed | -CUCAGCC------------------------------------------------------------------------------------------ | 15 | novel | |||||||
| seed | -----------ACUCUCA-------------------------------------------------------------------------------- | 3 | novel | |||||||
| seed | ---------------UCAUGUC---------------------------------------------------------------------------- | 2 | novel | |||||||
| seed | ----------------------------------------------UUCCUAU--------------------------------------------- | 2 | novel | |||||||
| seed | ----------------------------------------------------------------CCUGGAU--------------------------- | 2 | novel | |||||||
| seed | ---------------------------------------UGACAGU---------------------------------------------------- | 1 | novel | |||||||
| seed | -----------------------------------------------------AAGCCUC-------------------------------------- | 1 | novel | |||||||
| seed | ---------------------------------------------------AUAAGCC---------------------------------------- | 1 | novel | |||||||
| seed | -----------------------------------------------UCCUAUA-------------------------------------------- | 1 | novel | |||||||
| seed | ------------------------------CAGCUUA------------------------------------------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------------TCTCATGTCGGGTCTCTCAG----------------------------------------------------------------- | 20 | 1 | - | - | - | - | - | 17 | 1 | |
| TCTCAGCCTTTACTCTCATGTC---------------------------------------------------------------------------- | 22 | 1 | - | 1 | - | - | 2 | 10 | - | |
| ----------TACTCTCATGTCGGGTCTCTCAG----------------------------------------------------------------- | 23 | 2 | 1 | - | - | - | - | - | - | |
| ---------------------------------------------TTTCCTATAAGCCTCTCAG---------------------------------- | 19 | - | - | - | - | 1 | - | 1 | - | |
| --------------CTCATGTCGGGTCTCTCAG----------------------------------------------------------------- | 19 | - | - | - | - | - | - | 2 | - | |
| -------------TCTCATGTCGGGTCTCTCA------------------------------------------------------------------ | 19 | - | - | - | - | - | - | 1 | - | |
| ---------------------------------------------------------------GCCTGGATTTCTGGAATGTCCCCA----------- | 24 | - | - | - | - | - | - | 1 | - | |
| ---------------------------------------------------------------GCCTGGATTTCTGGAATGTCCCC------------ | 23 | - | - | - | - | - | - | 1 | - | |
| -----------------------------TCAGCTTAGGTGACAGTTTC------------------------------------------------- | 20 | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------------TTCCTATAAGCCTCTCAG---------------------------------- | 18 | - | - | - | - | - | 1 | - | - | |
| --------------------------------------------------TATAAGCCTCTCAGCCTGGA---------------------------- | 20 | - | - | - | - | - | - | 1 | - | |
| TCTCAGCCTTTACTCTCAT------------------------------------------------------------------------------- | 19 | - | - | - | 1 | - | - | - | - | |
| -------------TCTCATGTCGGGTCTCTCAGC---------------------------------------------------------------- | 21 | 1 | - | - | - | - | - | - | - | |
| ----------------------------------------------------TAAGCCTCTCAGCCTGGA---------------------------- | 18 | - | - | - | - | - | - | 1 | - | |
| --------------------------------------GTGACAGTTTCCTATAAGC----------------------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| rat | TCTCAGCCTTTACTCTCATGTCGGGTCTCTCAGcttaggtgacagtttcctataagcctctcagcctggatttctggaatgtccccaggcccagacca | |||||||||
| ************************************************************************************************** | ||||||||||
| rat | .......................(((((....((((.((.((((..((((......((.........))......)))))))))).))))..))))). | 0.660 -23.30 | ||||||||
| rat | chromosome:3:76976471:76976568:1 | intergenic |
novel_cloningHIGH_multiarm_DicerNOK_5varHIGH (2 loci)
sblock766 [novel_cloningHIGH_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.061 | no | no | 0.33/0.58 | 18/25/0.74 | 4.7 0.0 2.0 0.0 0.5 0.3 | 4.3 0.0 0.0 2.0 1.5 0.0 | 21 1 5 2 2 3 | 0 0 0 0 0 0 | 6 1 1 1 2 1 | 0 0 0 0 0 0 | 16 36 34 26 7 0 | 5 -2 3 12 31 38 | 5arm 5arm_loop 3arm 3arm 3arm 3arm | 1 1 1 1 1 1 | nd nd nd nd nd nd | 0.23 0.58 0.38 0.26 0.35 0.41 | 2 8 6 2 4 5 | 57 | 7 | -11 | -9 |
| reads | miRBase family seed | ||||||||
| seed | ----------------------------GGAAAAC----------------------------------------------------------------------------------- | 19 | novel | ||||||
| seed | -----------------CGGAUGC---------------------------------------------------------------------------------------------- | 15 | novel | ||||||
| seed | --------------------------CUGGAAA------------------------------------------------------------------------------------- | 5 | novel | ||||||
| seed | ----------------------GCAUCUG----------------------------------------------------------------------------------------- | 3 | novel | ||||||
| seed | -------------------------------------------------------------GGGAUCA-------------------------------------------------- | 3 | novel | ||||||
| seed | ---------------------------UGGAAAA------------------------------------------------------------------------------------ | 2 | novel | ||||||
| seed | ----------------------------------------------------------------------CAGGUUA----------------------------------------- | 2 | novel | ||||||
| seed | ------------------------------------------------------------------------------------------------CAUCACU--------------- | 2 | novel | ||||||
| seed | ------------------------------------------------------------------CAUGCAG--------------------------------------------- | 2 | novel | ||||||
| seed | -------------------------------------------------------------------------------------------------AUCACUU-------------- | 1 | novel | ||||||
| seed | -----------------------------------------------------------------------------------------CCCUGCU---------------------- | 1 | novel | ||||||
| seed | ------------------------------------------------------------------------------------------CCUGCUC--------------------- | 1 | novel | ||||||
| seed | -------------------------------------UAAACUC-------------------------------------------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T4S1 | T5S1 | T5S2 | |||
| ----------------TCGGATGCATCTGGAAAACACT-------------------------------------------------------------------------------- | 22 | - | 1 | - | - | 1 | 12 | - | |
| ---------------------------TGGAAAACACTAAACTCACTC---------------------------------------------------------------------- | 21 | - | 1 | - | 1 | - | 9 | - | |
| ---------------------------TGGAAAACACTAAACTCAC------------------------------------------------------------------------ | 19 | 1 | 2 | - | - | - | 3 | - | |
| -------------------------TCTGGAAAACACTAAACTCACTC---------------------------------------------------------------------- | 23 | - | - | - | - | - | 3 | - | |
| ------------------------------------------------------------TGGGATCATGCAGGTTATCTCAGA---------------------------------- | 24 | - | - | - | - | - | 3 | - | |
| -----------------------------------------------------------------TCATGCAGGTTATCTCAGA---------------------------------- | 19 | - | - | - | - | - | 2 | - | |
| -----------------------------------------------------------------------------------------------TCATCACTTCCTTAAATGTCTGT | 23 | - | - | - | - | - | 2 | - | |
| ---------------------TGCATCTGGAAAACACTAAACTCAC------------------------------------------------------------------------ | 25 | - | - | - | - | - | 2 | - | |
| --------------------------CTGGAAAACACTAAACTCA------------------------------------------------------------------------- | 19 | - | - | - | - | - | - | 1 | |
| ------------------------------------------------------------------------------------------------CATCACTTCCTTAAATGTCTGT | 22 | - | - | - | - | - | 1 | - | |
| ---------------------------TGGAAAACACTAAACTCA------------------------------------------------------------------------- | 18 | - | - | - | - | - | 1 | - | |
| ---------------------------------------------------------------------GCAGGTTATCTCAGATTTGCCCC-------------------------- | 23 | - | - | - | - | - | 1 | - | |
| ---------------------------------------------------------------------GCAGGTTATCTCAGATTTG------------------------------ | 19 | - | - | - | - | - | 1 | - | |
| --------------------------CTGGAAAACACTAAACTCACTC---------------------------------------------------------------------- | 22 | - | 1 | - | - | - | - | - | |
| -------------------------TCTGGAAAACACTAAACTCACT----------------------------------------------------------------------- | 22 | - | - | - | - | - | 1 | - | |
| ---------------------------TGGAAAACACTAAACTCACT----------------------------------------------------------------------- | 20 | - | - | - | - | - | 1 | - | |
| ---------------------TGCATCTGGAAAACACTAAACTCA------------------------------------------------------------------------- | 24 | 1 | - | - | - | - | - | - | |
| ----------------------------------------------------------------------------------------CCCCTGCTCATCACTTCCTTAAA------- | 23 | - | - | 1 | - | - | - | - | |
| ------------------------------------CTAAACTCACTCCCGCCCT--------------------------------------------------------------- | 19 | - | - | - | - | - | 1 | - | |
| ----------------TCGGATGCATCTGGAAAACAC--------------------------------------------------------------------------------- | 21 | - | - | - | - | - | 1 | - | |
| -------------------------TCTGGAAAACACTAAACTCA------------------------------------------------------------------------- | 20 | 1 | - | - | - | - | - | - | |
| -----------------------------------------------------------------------------------------CCCTGCTCATCACTTCCTT---------- | 19 | - | - | - | - | - | 1 | - | |
| rat | catttgatgtggtgcaTCGGATGCATCTGGAAAACACTAAACTCACTCccgccctggggctgggatcatgcaggttatctcagatttgcccctgctcatcacttccttaaatgtctgt | ||||||||
| ********************************************************************************************************************** | |||||||||
| -------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000016427 ENSRNOG00000012031 St8sia2 | ||||||||
| rat | (((((((.((((((...(((..(((((((((.(((.((........(((((((....))).))))......))))).)).))))..)))..)))..))))))....)))))))..... | 0.950 -33.54 | |||||||
| rat | chromosome:1:129022021:129022138:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000016427|ENSRNOG00000012031 ## ENSRNOG00000012031|protein_coding|St8sia2|Alpha-2,8-sialyltransferase 8B (EC 2.4.99.-) (ST8Sia II) (Sialyltransferase X) (STX). [Source:UniProtKB/Swiss-Prot;Acc:Q07977] |
sblock9280 [novel_cloningHIGH_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.032 | no | no | 0.33/0.63 | 18/26/0.82 | 0.0 0.0 1.1 0.0 | 0.0 0.0 0.0 0.0 | 34 1 12 1 | 0 0 0 0 | 3 1 3 1 | 0 0 0 0 | 20 25 17 0 | 6 -1 5 26 | 5arm 3arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.29 0.19 0.30 0.33 | 2 3 3 3 | 72 | 3 | 4 | 2 |
| reads | miRBase family seed | ||||
| seed | ---------------------GACUGUU--------------------------------------------------------------------- | 50 | novel | ||
| seed | ----------------------------------------------------------GCUUGGU-------------------------------- | 7 | novel | ||
| seed | --------------------------------------------------------------GGUACAU---------------------------- | 5 | novel | ||
| seed | -------------------------------------------------------------UGGUACA----------------------------- | 5 | novel | ||
| seed | -----------------------------------------------------------------ACAUAGA------------------------- | 2 | miR-376c | ||
| seed | ----------------------------------------------------GCCCCUG-------------------------------------- | 1 | novel | ||
| seed | -------------------------------------------------------------------------------GCUAGCC----------- | 1 | novel | ||
| seed | ----------------------ACUGUUU-------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| --------------------TGACTGTTTATGGTTAGGCAC-------------------------------------------------------- | 21 | - | 1 | 34 | |
| --------------------TGACTGTTTATGGTTAGGCACG------------------------------------------------------- | 22 | 1 | - | 5 | |
| ------------------------------------------------------------TTGGTACATAGATTTTCCTG----------------- | 20 | - | - | 5 | |
| ---------------------------------------------------------TGCTTGGTACATAGATTTTCCTG----------------- | 23 | 1 | - | 3 | |
| --------------------TGACTGTTTATGGTTAGGCACGAGGG--------------------------------------------------- | 26 | - | - | 4 | |
| -------------------------------------------------------------TGGTACATAGATTTTCCTG----------------- | 19 | - | - | 4 | |
| --------------------TGACTGTTTATGGTTAGG----------------------------------------------------------- | 18 | - | - | 2 | |
| --------------------TGACTGTTTATGGTTAGGCACGA------------------------------------------------------ | 23 | - | - | 2 | |
| -------------------------------------------------------------TGGTACATAGATTTTCCTGCT--------------- | 21 | - | - | 1 | |
| ---------------------------------------------------------TGCTTGGTACATAGATTT---------------------- | 18 | - | - | 1 | |
| ---------------------------------------------------------TGCTTGGTACATAGATTTTC-------------------- | 20 | - | 1 | - | |
| ----------------------------------------------------------------TACATAGATTTTCCTGCTAGCC----------- | 22 | - | - | 1 | |
| --------------------TGACTGTTTATGGTTAGGCA--------------------------------------------------------- | 20 | - | - | 1 | |
| ---------------------------------------------------TGCCCCTGCTTGGTACATAGA------------------------- | 21 | - | - | 1 | |
| ---------------------GACTGTTTATGGTTAGGCAC-------------------------------------------------------- | 20 | - | - | 1 | |
| ---------------------------------------------------------TGCTTGGTACATAGATTTTCCT------------------ | 22 | - | - | 1 | |
| ------------------------------------------------------------------------------TGCTAGCCTCCCCTCTGAG | 19 | - | - | 1 | |
| ----------------------------------------------------------------TACATAGATTTTCCTGCTAGCCTCC-------- | 25 | - | - | 1 | |
| rat | ggaggatggttgcatgggctTGACTGTTTATGGTTAGGCACgagggcaacctgcccctgcttggtacatagattttcctgctagcctcccctctgag | ||||
| ************************************************************************************************* | |||||
| ----------------------------------------------------------------------------------------------------------- | ENSRNOT00000047859 ENSRNOG00000024953 LOC678820 | ||||
| rat | (((((..((..((...(((..((..(((((((..((((((...((((.....)))).))))))...)))))))..))..))).))..)))))))... | 0.950 -35.20 | |||
| rat | chromosome:5:25428126:25428222:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000041129|ENSRNOG00000024953 ## Opposite_strand|Intronic_coding|ENSRNOT00000047859|ENSRNOG00000024953 ## ENSRNOG00000024953|protein_coding|LOC678820| |
novel_cloningHIGH_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH (2 loci)
sblock11375 [novel_cloningHIGH_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.021 | no | no | 0.22/0.53 | 18/24/0.82 | 0.0 0.0 0.0 1.7 0.0 0.0 | 0.0 1.7 0.0 2.7 0.0 0.0 | 1 84 2 3 1 13 | 0 0 0 0 0 0 | 1 4 1 2 1 2 | 0 0 0 0 0 0 | 2 6 14 24 23 9 | 19 11 3 -7 -1 12 | 5arm 5arm 5arm 5arm_loop_3arm 3arm 3arm | 1 1 1 1 1 1 | nd nd nd nd nd nd | 0.58 0.52 0.43 0.47 0.37 0.50 | 9 9 4 4 6 9 | 124 | 6 | 0 | -3 |
| reads | miRBase family seed | |||||||
| seed | -------AGCCAUU-------------------------------------------------------------------------- | 90 | novel | |||||
| seed | ------------------------------------------------------------UCAAAUA--------------------- | 17 | novel | |||||
| seed | ---------------------------------------------------------UCUUCAA------------------------ | 4 | novel | |||||
| seed | -------------------------------------------------------------CAAAUAU-------------------- | 2 | novel | |||||
| seed | -------------------------UGAAUGA-------------------------------------------------------- | 2 | novel | |||||
| seed | ---------------GCGUGAU------------------------------------------------------------------ | 2 | novel | |||||
| seed | ---------CCAUUUG------------------------------------------------------------------------ | 1 | novel | |||||
| seed | ---CGCUAGC------------------------------------------------------------------------------ | 1 | novel | |||||
| seed | --------------------------------------------------------UUCUUCA------------------------- | 1 | novel | |||||
| seed | ------------------------------GAACCAA--------------------------------------------------- | 1 | novel | |||||
| seed | ----------------------------------------------------------CUUCAAA----------------------- | 1 | novel | |||||
| seed | ----------CAUUUGC----------------------------------------------------------------------- | 1 | novel | |||||
| seed | -----------------------------------------------GAAACCU---------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T5S1 | T5S2 | |||
| ------TAGCCATTTGCGTGATTTTTGAA----------------------------------------------------------- | 23 | 1 | 1 | - | - | 31 | - | |
| ------TAGCCATTTGCGTGATTTTTG------------------------------------------------------------- | 21 | - | 1 | - | 1 | 30 | - | |
| -----------------------------------------------------------TTCAAATATCTCTTCTTCAG--------- | 20 | - | - | - | - | 13 | - | |
| ------TAGCCATTTGCGTGATTTTT-------------------------------------------------------------- | 20 | - | 1 | - | - | 12 | - | |
| ------TAGCCATTTGCGTGATTTT--------------------------------------------------------------- | 19 | - | 1 | - | - | 11 | - | |
| -----------------------------------------------------------TTCAAATATCTCTTCTTCA---------- | 19 | - | - | - | - | 3 | - | |
| --------------------------------------------------------TTCTTCAAATATCTCTTCTTCAG--------- | 23 | - | - | 1 | - | 2 | - | |
| --------------TGCGTGATTTTTGAATGAACCAA--------------------------------------------------- | 23 | - | - | - | - | 2 | - | |
| ------------------------------------------------------------TCAAATATCTCTTCTTCAG--------- | 19 | - | - | - | - | 2 | - | |
| --------------------------------------------------------TTCTTCAAATATCTCTTCTTC----------- | 21 | - | - | - | - | 1 | - | |
| ------------------------TTGAATGAACCAATTCTAA--------------------------------------------- | 19 | - | - | - | - | 1 | - | |
| -----------------------------------------------------------TTCAAATATCTCTTCTTCAGCCG------ | 23 | - | - | - | - | 1 | - | |
| ----------------------------------------------TGAAACCTTTTTCTTCAAA----------------------- | 19 | - | 1 | - | - | - | - | |
| ---------CCATTTGCGTGATTTTTGA------------------------------------------------------------ | 19 | - | - | - | - | 1 | - | |
| -------------------------------------------------------TTTCTTCAAATATCTCTTCTTCAG--------- | 24 | - | - | - | - | 1 | - | |
| ------------------------TTGAATGAACCAATTCTAATTTT----------------------------------------- | 23 | - | - | - | - | 1 | - | |
| -----------------------------TGAACCAATTCTAATTTT----------------------------------------- | 18 | - | - | - | - | - | 1 | |
| --TCGCTAGCCATTTGCGTGA------------------------------------------------------------------- | 19 | - | - | - | - | 1 | - | |
| ---------------------------------------------------------TCTTCAAATATCTCTTCTTCAG--------- | 22 | - | - | - | - | 1 | - | |
| --------GCCATTTGCGTGATTTTTGAATGA-------------------------------------------------------- | 24 | - | - | - | - | 1 | - | |
| rat | cctcgcTAGCCATTTGCGTGATTTTTGAAtgaaccaattctaattttgaaacctttttcTTCAAATATCTCTTCTTCAGccggtgagg | |||||||
| **************************************************************************************** | ||||||||
| rat | ((((((..((.........(((.((((((.(((....(((.......)))......))))))))).))).........))..)))))) | 0.960 -19.47 | ||||||
| rat | chromosome:7:112747081:112747168:1 | intergenic |
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