other hairpins
novel_cloningHIGH_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH (2 loci)
sblock8743 [novel_cloningHIGH_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.659 | no | no | 0.35/0.68 | 19/24/0.88 | 2.2 0.0 0.0 0.0 | 1.4 0.0 0.0 0.0 | 5 1 2 41 | 0 0 0 0 | 1 1 1 3 | 0 0 0 0 | 21 38 42 20 | 3 -8 -12 13 | 5arm 5arm_loop_3arm 5arm_loop_3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.40 0.53 0.58 0.58 | 6 7 7 7 | 58 | 3 | 0 | 6 |
| reads | miRBase family seed | ||||
| seed | ----------------------------------------------------------------------GCCAAUA------------------------------------ | 47 | novel | ||
| seed | ----------------------------------------------------------------------------AAGACAU------------------------------ | 3 | novel | ||
| seed | -----------------------GACCUGU----------------------------------------------------------------------------------- | 2 | novel | ||
| seed | ----------------------------GUAGUGU------------------------------------------------------------------------------ | 2 | miR-142 | ||
| seed | -------------------------------------------CUGCGGU--------------------------------------------------------------- | 2 | novel | ||
| seed | ---------------------------------------GUGUCUG------------------------------------------------------------------- | 1 | novel | ||
| seed | ----------------------UGACCUG------------------------------------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T3S2 | T5S1 | |||
| ---------------------------------------------------------------------TGCCAATAAGACATGAAATCTCAG-------------------- | 24 | 1 | 1 | 41 | |
| ---------------------------------------------------------------------TGCCAATAAGACATGAAATCTC---------------------- | 22 | 1 | - | 1 | |
| ---------------------------TGTAGTGTCTCTGTGTCTG------------------------------------------------------------------- | 19 | - | - | 2 | |
| ------------------------------------------TCTGCGGTAGCCCTCCGTC---------------------------------------------------- | 19 | - | - | 2 | |
| ----------------------TGACCTGTAGTGTCTCTGTGTC--------------------------------------------------------------------- | 22 | - | - | 2 | |
| ---------------------------------------------------------------------------TAAGACATGAAATCTCAGC------------------- | 19 | - | - | 2 | |
| ---------------------------------------------------------------------TGCCAATAAGACATGAAATCTCA--------------------- | 23 | - | - | 1 | |
| ---------------------------------------------------------------------TGCCAATAAGACATGAAATC------------------------ | 20 | - | - | 1 | |
| ---------------------CTGACCTGTAGTGTCTCTGT------------------------------------------------------------------------ | 20 | - | - | 1 | |
| --------------------------------------TGTGTCTGCGGTAGCCCTC-------------------------------------------------------- | 19 | - | - | 1 | |
| ---------------------------------------------------------------------------TAAGACATGAAATCTCAGCCCTGT-------------- | 24 | - | - | 1 | |
| rat | gggatcttggcttgcttctctctgacctgtagtgtctctgtgtctgcggtagccctccgtccccacccaTGCCAATAAGACATGAAATCTCAGccctgtgtagtcagataccc | ||||
| ***************************************************************************************************************** | |||||
| rat | ((((((.((((.(((......((((......((((((..(((...((((.......))))...)))...........))))))......))))......)))))))))).))) | 0.800 -25.62 | |||
| rat | chromosome:4:164239888:164240000:-1 | intergenic |
novel_cloningHIGH_multiarm_DicerNOK_shortStem_bulgeHIGH (2 loci)
sblock113 [novel_cloningHIGH_multiarm_DicerNOK_shortStem_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.042 | no | no | 0.32/0.55 | 18/26/0.86 | 1.0 0.0 3.4 2.0 0.0 0.0 | 0.6 0.0 1.6 2.7 0.0 0.5 | 48 1 5 6 1 2 | 0 0 0 0 0 0 | 6 1 1 2 1 1 | 0 0 0 0 0 0 | 1 14 37 31 26 1 | 27 13 -15 -6 9 30 | 5arm 5arm 5arm_loop_3arm 3arm 3arm 3arm | 3 4 4 5 5 5 | nd nd nd nd nd nd | 0.45 0.29 0.28 0.33 0.47 0.39 | 4 3 6 4 7 3 | 83 | 6 | 0 | 25 |
| reads | miRBase family seed | |||||||
| seed | --UCUGAGG------------------------------------------------------------------------------------------------------ | 35 | novel | |||||
| seed | -----GAGGAUG--------------------------------------------------------------------------------------------------- | 15 | novel | |||||
| seed | ---CUGAGGA----------------------------------------------------------------------------------------------------- | 12 | novel | |||||
| seed | ------------------------------------------------------GUUUGUC-------------------------------------------------- | 2 | novel | |||||
| seed | -CUCUGAG------------------------------------------------------------------------------------------------------- | 2 | novel | |||||
| seed | ----UGAGGAU---------------------------------------------------------------------------------------------------- | 2 | novel | |||||
| seed | ----------------------------------------------------------------------------------------GAAGAAA---------------- | 2 | novel | |||||
| seed | ------------------------------------------GCGUGGA-------------------------------------------------------------- | 2 | novel | |||||
| seed | ----------------------------------------------------AUGUUUG---------------------------------------------------- | 2 | novel | |||||
| seed | -----------------------------------------GGCGUGG--------------------------------------------------------------- | 1 | novel | |||||
| seed | -------GGAUGAU------------------------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | --------------------------------------GCUGGCG------------------------------------------------------------------ | 1 | novel | |||||
| seed | --------GAUGAUU------------------------------------------------------------------------------------------------ | 1 | novel | |||||
| seed | -------------------------------------------------------------------GGGUGUA------------------------------------- | 1 | novel | |||||
| seed | --------------------------------------------GUGGAUG------------------------------------------------------------ | 1 | novel | |||||
| seed | ---------------------------------------------------------UGUCCAG----------------------------------------------- | 1 | novel | |||||
| seed | ---------------AUUGAGU----------------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | -------------------------------------------------------UUUGUCC------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T3S2 | T4S1 | T5S1 | |||
| -CTCTGAGGATGATTATTGAGTGA--------------------------------------------------------------------------------------- | 23 | 1 | 2 | - | - | - | 19 | |
| ----TGAGGATGATTATTGAGTGA--------------------------------------------------------------------------------------- | 20 | 2 | - | - | - | - | 13 | |
| -CTCTGAGGATGATTATTGAG------------------------------------------------------------------------------------------ | 20 | - | - | - | - | 1 | 9 | |
| --TCTGAGGATGATTATTGAGTGA--------------------------------------------------------------------------------------- | 22 | - | - | - | 1 | - | 7 | |
| --TCTGAGGATGATTATTGAG------------------------------------------------------------------------------------------ | 19 | - | 1 | 1 | - | - | - | |
| -------GGATGATTATTGAGTGAATTCA---------------------------------------------------------------------------------- | 22 | - | - | - | - | - | 1 | |
| -----------------------------------------------------TGTTTGTCCAGTGTGGGTGT-------------------------------------- | 20 | - | - | - | - | - | 1 | |
| ----------------------------------------TGGCGTGGATGTATGTTTGTCCAGTG--------------------------------------------- | 26 | - | - | - | - | - | 1 | |
| -----------------------------------------GGCGTGGATGTATGTTTGTCCAGTG--------------------------------------------- | 25 | - | - | - | - | - | 1 | |
| -CTCTGAGGATGATTATTGAGT----------------------------------------------------------------------------------------- | 21 | - | - | - | - | - | 1 | |
| -CTCTGAGGATGATTATTGAGTGAA-------------------------------------------------------------------------------------- | 24 | - | - | - | - | - | 1 | |
| -------------------------------------TGCTGGCGTGGATGTATGTTTGTCC------------------------------------------------- | 25 | - | - | - | - | - | 1 | |
| -----------------------------------------------------TGTTTGTCCAGTGTGGGTGTAATC---------------------------------- | 24 | - | - | - | - | - | 1 | |
| ---------------------------------------------------TATGTTTGTCCAGTGTGGGTGT-------------------------------------- | 22 | - | - | - | - | - | 1 | |
| --TCTGAGGATGATTATTGAGT----------------------------------------------------------------------------------------- | 20 | - | - | - | - | - | 1 | |
| -----------------------------------------GGCGTGGATGTATGTTTGTCC------------------------------------------------- | 21 | - | - | - | - | - | 1 | |
| ---------------------------------------------------TATGTTTGTCCAGTGTGGGTGTAATC---------------------------------- | 26 | - | - | - | - | - | 1 | |
| ---CTGAGGATGATTATTGAG------------------------------------------------------------------------------------------ | 18 | - | - | - | - | - | 1 | |
| ---------------------------------------------------------------------------------------TGAAGAAACAAAGGGCAGCCCC-- | 22 | - | - | - | - | - | 1 | |
| -------------------------------------------CGTGGATGTATGTTTGTCC------------------------------------------------- | 19 | - | - | - | - | - | 1 | |
| ---CTGAGGATGATTATTGAGTGA--------------------------------------------------------------------------------------- | 21 | - | - | - | - | - | 1 | |
| TCTCTGAGGATGATTATTGAG------------------------------------------------------------------------------------------ | 21 | - | - | - | - | - | 1 | |
| ------AGGATGATTATTGAGTGAA-------------------------------------------------------------------------------------- | 19 | - | - | - | - | - | 1 | |
| --------------TATTGAGTGAATTCAGGCGACACT------------------------------------------------------------------------- | 24 | - | - | - | - | - | 1 | |
| -CTCTGAGGATGATTATTGAGTG---------------------------------------------------------------------------------------- | 22 | - | 1 | - | - | - | - | |
| ------------------------------------------------------------------TGGGTGTAATCTGGTGTGG-------------------------- | 19 | - | 1 | - | - | - | - | |
| --------------------------------------------------------TTGTCCAGTGTGGGTGTA------------------------------------- | 18 | - | - | 1 | - | - | - | |
| ---------------------------------------------------------------------------------------TGAAGAAACAAAGGGCAGCCCCA- | 23 | - | - | - | - | - | 1 | |
| TCTCTGAGGATGATTATTGAGTGA--------------------------------------------------------------------------------------- | 24 | - | - | - | - | - | 1 | |
| ------------------------------------------------------GTTTGTCCAGTGTGGGTGTAATCTGG------------------------------- | 26 | - | - | - | - | - | 1 | |
| --TCTGAGGATGATTATTGAGTG---------------------------------------------------------------------------------------- | 21 | - | - | - | - | - | 1 | |
| rat | tCTCTGAGGATGATTATTGAGTGAattcaggcgacactgctggcgtggatgtatgtttgtccagtgtgggtgtaatctggtgtggcctgaagaaacaaagggcagccccag | |||||||
| *************************************************************************************************************** | ||||||||
| rat | ...(((.((.((....((..((...(((((((.((((((((.(((((((((......)))))).))).))).......))))).)))))))...))..))..)).)).))) | 0.820 -36.71 | ||||||
| rat | chromosome:1:48277126:48277236:-1 | intergenic |
sblock1354 [novel_cloningHIGH_multiarm_DicerNOK_shortStem_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.042 | no | no | 0.32/0.55 | 18/26/0.86 | 1.0 0.0 3.4 2.0 0.0 0.0 | 0.6 0.0 1.6 2.7 0.0 0.5 | 48 1 5 6 1 2 | 0 0 0 0 0 0 | 6 1 1 2 1 1 | 0 0 0 0 0 0 | 1 14 37 31 26 1 | 27 13 -15 -6 9 30 | 5arm 5arm 5arm_loop_3arm 3arm 3arm 3arm | 3 4 4 5 5 5 | nd nd nd nd nd nd | 0.45 0.29 0.28 0.33 0.47 0.39 | 4 3 6 4 7 3 | 83 | 6 | 0 | 25 |
| reads | miRBase family seed | |||||||
| seed | --UCUGAGG------------------------------------------------------------------------------------------------------ | 35 | novel | |||||
| seed | -----GAGGAUG--------------------------------------------------------------------------------------------------- | 15 | novel | |||||
| seed | ---CUGAGGA----------------------------------------------------------------------------------------------------- | 12 | novel | |||||
| seed | ------------------------------------------------------GUUUGUC-------------------------------------------------- | 2 | novel | |||||
| seed | -CUCUGAG------------------------------------------------------------------------------------------------------- | 2 | novel | |||||
| seed | ----UGAGGAU---------------------------------------------------------------------------------------------------- | 2 | novel | |||||
| seed | ----------------------------------------------------------------------------------------GAAGAAA---------------- | 2 | novel | |||||
| seed | ------------------------------------------GCGUGGA-------------------------------------------------------------- | 2 | novel | |||||
| seed | ----------------------------------------------------AUGUUUG---------------------------------------------------- | 2 | novel | |||||
| seed | -----------------------------------------GGCGUGG--------------------------------------------------------------- | 1 | novel | |||||
| seed | -------GGAUGAU------------------------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | --------------------------------------GCUGGCG------------------------------------------------------------------ | 1 | novel | |||||
| seed | --------GAUGAUU------------------------------------------------------------------------------------------------ | 1 | novel | |||||
| seed | -------------------------------------------------------------------GGGUGUA------------------------------------- | 1 | novel | |||||
| seed | --------------------------------------------GUGGAUG------------------------------------------------------------ | 1 | novel | |||||
| seed | ---------------------------------------------------------UGUCCAG----------------------------------------------- | 1 | novel | |||||
| seed | ---------------AUUGAGU----------------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | -------------------------------------------------------UUUGUCC------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T3S2 | T4S1 | T5S1 | |||
| -CTCTGAGGATGATTATTGAGTGA--------------------------------------------------------------------------------------- | 23 | 1 | 2 | - | - | - | 19 | |
| ----TGAGGATGATTATTGAGTGA--------------------------------------------------------------------------------------- | 20 | 2 | - | - | - | - | 13 | |
| -CTCTGAGGATGATTATTGAG------------------------------------------------------------------------------------------ | 20 | - | - | - | - | 1 | 9 | |
| --TCTGAGGATGATTATTGAGTGA--------------------------------------------------------------------------------------- | 22 | - | - | - | 1 | - | 7 | |
| --TCTGAGGATGATTATTGAG------------------------------------------------------------------------------------------ | 19 | - | 1 | 1 | - | - | - | |
| -------GGATGATTATTGAGTGAATTCA---------------------------------------------------------------------------------- | 22 | - | - | - | - | - | 1 | |
| -----------------------------------------------------TGTTTGTCCAGTGTGGGTGT-------------------------------------- | 20 | - | - | - | - | - | 1 | |
| ----------------------------------------TGGCGTGGATGTATGTTTGTCCAGTG--------------------------------------------- | 26 | - | - | - | - | - | 1 | |
| -----------------------------------------GGCGTGGATGTATGTTTGTCCAGTG--------------------------------------------- | 25 | - | - | - | - | - | 1 | |
| -CTCTGAGGATGATTATTGAGT----------------------------------------------------------------------------------------- | 21 | - | - | - | - | - | 1 | |
| -------------------------------------TGCTGGCGTGGATGTATGTTTGTCC------------------------------------------------- | 25 | - | - | - | - | - | 1 | |
| -CTCTGAGGATGATTATTGAGTGAA-------------------------------------------------------------------------------------- | 24 | - | - | - | - | - | 1 | |
| -----------------------------------------------------TGTTTGTCCAGTGTGGGTGTAATC---------------------------------- | 24 | - | - | - | - | - | 1 | |
| ---------------------------------------------------TATGTTTGTCCAGTGTGGGTGT-------------------------------------- | 22 | - | - | - | - | - | 1 | |
| --TCTGAGGATGATTATTGAGT----------------------------------------------------------------------------------------- | 20 | - | - | - | - | - | 1 | |
| -----------------------------------------GGCGTGGATGTATGTTTGTCC------------------------------------------------- | 21 | - | - | - | - | - | 1 | |
| ---------------------------------------------------TATGTTTGTCCAGTGTGGGTGTAATC---------------------------------- | 26 | - | - | - | - | - | 1 | |
| ---CTGAGGATGATTATTGAG------------------------------------------------------------------------------------------ | 18 | - | - | - | - | - | 1 | |
| ---------------------------------------------------------------------------------------TGAAGAAACAAAGGGCAGCCCC-- | 22 | - | - | - | - | - | 1 | |
| -------------------------------------------CGTGGATGTATGTTTGTCC------------------------------------------------- | 19 | - | - | - | - | - | 1 | |
| ---CTGAGGATGATTATTGAGTGA--------------------------------------------------------------------------------------- | 21 | - | - | - | - | - | 1 | |
| ------AGGATGATTATTGAGTGAA-------------------------------------------------------------------------------------- | 19 | - | - | - | - | - | 1 | |
| TCTCTGAGGATGATTATTGAG------------------------------------------------------------------------------------------ | 21 | - | - | - | - | - | 1 | |
| --------------TATTGAGTGAATTCAGGCGACACT------------------------------------------------------------------------- | 24 | - | - | - | - | - | 1 | |
| -CTCTGAGGATGATTATTGAGTG---------------------------------------------------------------------------------------- | 22 | - | 1 | - | - | - | - | |
| ------------------------------------------------------------------TGGGTGTAATCTGGTGTGG-------------------------- | 19 | - | 1 | - | - | - | - | |
| ---------------------------------------------------------------------------------------TGAAGAAACAAAGGGCAGCCCCA- | 23 | - | - | - | - | - | 1 | |
| --------------------------------------------------------TTGTCCAGTGTGGGTGTA------------------------------------- | 18 | - | - | 1 | - | - | - | |
| TCTCTGAGGATGATTATTGAGTGA--------------------------------------------------------------------------------------- | 24 | - | - | - | - | - | 1 | |
| ------------------------------------------------------GTTTGTCCAGTGTGGGTGTAATCTGG------------------------------- | 26 | - | - | - | - | - | 1 | |
| --TCTGAGGATGATTATTGAGTG---------------------------------------------------------------------------------------- | 21 | - | - | - | - | - | 1 | |
| rat | tCTCTGAGGATGATTATTGAGTGAattcaggcgacactgctggcgtggatgtatgtttgtccagtgtgggtgtaatctggtgtggcctgaagaaacaaagggcagccccag | |||||||
| *************************************************************************************************************** | ||||||||
| rat | ...(((.((.((....((..((...(((((((.((((((((.(((((((((......)))))).))).))).......))))).)))))))...))..))..)).)).))) | 0.820 -36.71 | ||||||
| rat | chromosome:1:47985279:47985389:1 | intergenic |
novel_cloningHIGH_multiarm_bulgeHIGH (2 loci)
sblock12316 [novel_cloningHIGH_multiarm_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.164 | no | no | 0.42/0.52 | 18/26/0.82 | 0.0 0.0 | 0.0 0.0 | 18 4 | 0 0 | 6 1 | 0 0 | 12 32 | 25 1 | 5arm 3arm | 3 3 | nd nd | 0.43 0.26 | 4 4 | 51 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | -------------CCUAGCU------------------------------------------------------------------------------------------------ | 36 | novel | |||||
| seed | ----------------AGCUUGU--------------------------------------------------------------------------------------------- | 5 | novel | |||||
| seed | ------------------------------------------------------------------CCAGAUA------------------------------------------- | 4 | novel | |||||
| seed | ------------UCCUAGC------------------------------------------------------------------------------------------------- | 2 | novel | |||||
| seed | -UCCAAGG------------------------------------------------------------------------------------------------------------ | 2 | novel | |||||
| seed | ---------UCUUCCU---------------------------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | ---------------UAGCUUG---------------------------------------------------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T2S1 | T2S2 | T4S1 | T5S1 | T5S2 | |||
| ------------TCCTAGCTTGTACTGTCTTCCTG--------------------------------------------------------------------------------- | 23 | 3 | - | 1 | 1 | 18 | 1 | |
| ------------TCCTAGCTTGTACTGTCTTC------------------------------------------------------------------------------------ | 20 | 4 | 1 | - | - | 2 | - | |
| -----------------------------------------------------------------TCCAGATACCTCTGCTAAA-------------------------------- | 19 | - | - | - | - | 4 | - | |
| ---------------TAGCTTGTACTGTCTTCCTG--------------------------------------------------------------------------------- | 20 | - | - | - | - | 4 | - | |
| TTCCAAGGTTCTTCCTAGCTTGTACT------------------------------------------------------------------------------------------ | 26 | - | - | - | - | 2 | - | |
| ------------TCCTAGCTTGTACTGTCTTCC----------------------------------------------------------------------------------- | 21 | - | - | - | - | 2 | - | |
| --------------CTAGCTTGTACTGTCTTCCTGC-------------------------------------------------------------------------------- | 22 | - | - | - | - | 1 | - | |
| ------------TCCTAGCTTGTACTGTCT-------------------------------------------------------------------------------------- | 18 | - | - | - | - | 1 | - | |
| --------TTCTTCCTAGCTTGTACTGTCTTCC----------------------------------------------------------------------------------- | 25 | - | - | - | - | 1 | - | |
| -----------TTCCTAGCTTGTACTGTCTTCCT---------------------------------------------------------------------------------- | 23 | - | - | - | - | 1 | - | |
| -----------TTCCTAGCTTGTACTGTCTTCC----------------------------------------------------------------------------------- | 22 | - | - | - | - | 1 | - | |
| ---------------TAGCTTGTACTGTCTTCCTGCCTC----------------------------------------------------------------------------- | 24 | - | - | - | - | 1 | - | |
| ------------TCCTAGCTTGTACTGTCTTCCTGCC------------------------------------------------------------------------------- | 25 | - | - | - | - | 1 | - | |
| ------------TCCTAGCTTGTACTGTCTTCCT---------------------------------------------------------------------------------- | 22 | - | - | - | - | 1 | - | |
| rat | ttccaaggttctTCCTAGCTTGTACTGTCTTCCTGcctctggggatagaggctgtcggagggggctccagatacctctgctaaaagccggagtcgagggcatccaacctaaggact | |||||||
| ******************************************************************************************************************** | ||||||||
| <<<<<<<<<<<................................................................................................................... | ENSRNOT00000047326 ENSRNOG00000037286 LOC367336 | |||||||
| rat | ......((((((...(((.(((...(((((((....((((((((.((((((.((((((((....)))).)))))))))))).....))))))..)))))))..))).))))))))) | 0.820 -39.20 | ||||||
| rat | chromosome:9:105242635:105242750:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000047326|ENSRNOG00000037286 ## intergenic ## ENSRNOG00000037286|protein_coding|LOC367336| |
sblock12551 [novel_cloningHIGH_multiarm_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.023 | no | no | 0.42/0.52 | 18/26/0.82 | 0.0 0.0 | 0.0 0.0 | 18 4 | 0 0 | 6 1 | 0 0 | 12 32 | 25 1 | 5arm 3arm | 3 3 | nd nd | 0.30 0.26 | 2 4 | 51 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | -------------CCUAGCU------------------------------------------------------------------------------------------------ | 36 | novel | |||||
| seed | ----------------AGCUUGU--------------------------------------------------------------------------------------------- | 5 | novel | |||||
| seed | ------------------------------------------------------------------CCAGAUA------------------------------------------- | 4 | novel | |||||
| seed | ------------UCCUAGC------------------------------------------------------------------------------------------------- | 2 | novel | |||||
| seed | -UCCAAGG------------------------------------------------------------------------------------------------------------ | 2 | novel | |||||
| seed | ---------UCUUCCU---------------------------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | ---------------UAGCUUG---------------------------------------------------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T2S1 | T2S2 | T4S1 | T5S1 | T5S2 | |||
| ------------TCCTAGCTTGTACTGTCTTCCTG--------------------------------------------------------------------------------- | 23 | 3 | - | 1 | 1 | 18 | 1 | |
| ------------TCCTAGCTTGTACTGTCTTC------------------------------------------------------------------------------------ | 20 | 4 | 1 | - | - | 2 | - | |
| -----------------------------------------------------------------TCCAGATACCTCTGCTAAA-------------------------------- | 19 | - | - | - | - | 4 | - | |
| ---------------TAGCTTGTACTGTCTTCCTG--------------------------------------------------------------------------------- | 20 | - | - | - | - | 4 | - | |
| TTCCAAGGTTCTTCCTAGCTTGTACT------------------------------------------------------------------------------------------ | 26 | - | - | - | - | 2 | - | |
| ------------TCCTAGCTTGTACTGTCTTCC----------------------------------------------------------------------------------- | 21 | - | - | - | - | 2 | - | |
| --------------CTAGCTTGTACTGTCTTCCTGC-------------------------------------------------------------------------------- | 22 | - | - | - | - | 1 | - | |
| ------------TCCTAGCTTGTACTGTCT-------------------------------------------------------------------------------------- | 18 | - | - | - | - | 1 | - | |
| --------TTCTTCCTAGCTTGTACTGTCTTCC----------------------------------------------------------------------------------- | 25 | - | - | - | - | 1 | - | |
| -----------TTCCTAGCTTGTACTGTCTTCCT---------------------------------------------------------------------------------- | 23 | - | - | - | - | 1 | - | |
| -----------TTCCTAGCTTGTACTGTCTTCC----------------------------------------------------------------------------------- | 22 | - | - | - | - | 1 | - | |
| ---------------TAGCTTGTACTGTCTTCCTGCCTC----------------------------------------------------------------------------- | 24 | - | - | - | - | 1 | - | |
| ------------TCCTAGCTTGTACTGTCTTCCTGCC------------------------------------------------------------------------------- | 25 | - | - | - | - | 1 | - | |
| ------------TCCTAGCTTGTACTGTCTTCCT---------------------------------------------------------------------------------- | 22 | - | - | - | - | 1 | - | |
| rat | ttccaaggttctTCCTAGCTTGTACTGTCTTCCTGcctctggggatagaggctgtcggagggggctccagatacctctgctaaaagccggaggcgagggcgtccaacctaaggact | |||||||
| ******************************************************************************************************************** | ||||||||
| <<<<<<<<<<<................................................................................................................... | ENSRNOT00000045707 ENSRNOG00000032758 Ndufv2 | |||||||
| rat | ......((((((...(((.(((.((.((((((..((((((((((.((((((.((((((((....)))).)))))))))))).....)))))))))))))))).))).))))))))) | 0.940 -46.70 | ||||||
| rat | chromosome:9:104947291:104947406:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000046356|ENSRNOG00000032758 ## intergenic ## ENSRNOG00000032758|protein_coding|Ndufv2|NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase 24 kDa subunit). [Source:UniProtKB/Swiss-Prot;Acc:P19234] |
novel_cloningHIGH_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH (2 loci)
block1574961 [novel_cloningHIGH_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.185 | no | no | 0.36/0.58 | 18/26/0.86 | 0.0 0.0 0.6 | 0.0 0.2 0.0 | 1 8 91 | 0 0 0 | 1 3 6 | 0 0 0 | 2 7 18 | 9 -3 -12 | 5arm 5arm_loop 5arm_loop_3arm | 1 1 1 | nd nd nd | 0.37 0.36 0.43 | 3 4 5 | 142 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | ---------------------UGUGGAA-------------------------------------------- | 61 | novel | |||||
| seed | ----------------------GUGGAAU------------------------------------------- | 27 | novel | |||||
| seed | -------------------GUUGUGG---------------------------------------------- | 23 | novel | |||||
| seed | --------GGGUGAC--------------------------------------------------------- | 15 | novel | |||||
| seed | --------------------UUGUGGA--------------------------------------------- | 7 | novel | |||||
| seed | ------------------------GGAAUCA----------------------------------------- | 5 | novel | |||||
| seed | -----------------------UGGAAUC------------------------------------------ | 2 | novel | |||||
| seed | ------------GACUGGU----------------------------------------------------- | 1 | novel | |||||
| seed | ---CUCCUGG-------------------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T4S1 | T5S1 | |||
| --------------------TTGTGGAATCAGATAGGTTTCT------------------------------ | 22 | 4 | - | - | - | 1 | 52 | |
| ---------------------TGTGGAATCAGATAGGTTTCT------------------------------ | 21 | - | 1 | - | - | - | 23 | |
| ------------------TGTTGTGGAATCAGATAGGTTTCT------------------------------ | 24 | 2 | - | - | - | 1 | 16 | |
| -------------------GTTGTGGAATCAGATAGGTTTCT------------------------------ | 23 | 1 | - | - | - | - | 6 | |
| -------TGGGTGACTGGTGTTGTGGAATCAGA--------------------------------------- | 26 | - | - | - | - | - | 6 | |
| -----------------------TGGAATCAGATAGGTTTCT------------------------------ | 19 | - | - | - | 1 | - | 4 | |
| ---------------------TGTGGAATCAGATAGGTTTC------------------------------- | 20 | 1 | - | - | - | - | 2 | |
| ------------------TGTTGTGGAATCAGATAGG----------------------------------- | 19 | - | - | 1 | - | - | 2 | |
| -------TGGGTGACTGGTGTTGTGGAATCAG---------------------------------------- | 25 | - | - | - | - | - | 2 | |
| -------TGGGTGACTGGTGTTGTGGAATCA----------------------------------------- | 24 | - | 1 | - | - | - | 1 | |
| --------------------TTGTGGAATCAGATAGGTT--------------------------------- | 19 | 1 | - | - | - | - | 1 | |
| --------------------TTGTGGAATCAGATAGGTTTC------------------------------- | 21 | - | - | - | - | - | 2 | |
| ----------------------GTGGAATCAGATAGGTTTCT------------------------------ | 20 | - | - | - | - | - | 2 | |
| -------TGGGTGACTGGTGTTGTGGA--------------------------------------------- | 20 | 1 | - | - | - | - | 1 | |
| ------------------TGTTGTGGAATCAGATAGGTTTC------------------------------- | 23 | - | - | - | - | - | 1 | |
| --TCTCCTGGGTGACTGGTGT--------------------------------------------------- | 19 | - | 1 | - | - | - | - | |
| -------TGGGTGACTGGTGTTGTGGAAT------------------------------------------- | 22 | - | - | - | - | - | 1 | |
| -------TGGGTGACTGGTGTTGTG----------------------------------------------- | 18 | - | - | - | - | - | 1 | |
| -------TGGGTGACTGGTGTTGTGGAATC------------------------------------------ | 23 | 1 | - | - | - | - | - | |
| -----------TGACTGGTGTTGTGGAATCAGA--------------------------------------- | 22 | - | - | - | - | - | 1 | |
| rat | tctctcctgggtgactggTGTTGTGGAATCAGATAGGTTTCTatcacctcattgaatatttgctctcagaga | |||||||
| ************************************************************************ | ||||||||
| ---------------------------------------------------------------------------------- | ENSRNOT00000057552 ENSRNOG00000037879 | |||||||
| rat | (((((...((((((..((((....((((((.....))))))...))))...........))))))..))))) | 0.660 -16.32 | ||||||
| rat | chromosome:4:119284272:119284343:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000057552|ENSRNOG00000037879 ## ENSRNOG00000037879|protein_coding|| |
block97466 [novel_cloningHIGH_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.459 | no | no | 0.40/0.47 | 19/26/0.99 | 0.0 0.0 | 0.0 0.0 | 123 1 | 0 0 | 6 1 | 0 0 | 32 24 | -17 -2 | 5arm_loop_3arm 3arm_loop | 1 1 | nd nd | 0.43 0.42 | 4 4 | 141 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | ---------------------------------AGGUUGC------------------------------------------- | 137 | novel | |||||
| seed | ----------------------------------GGUUGCU------------------------------------------ | 2 | novel | |||||
| seed | -----------------------------------------AAGCUAU----------------------------------- | 1 | novel | |||||
| seed | ------------------------------CCUAGGU---------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --------------------------------TAGGTTGCTAAGCTATTCCTGTG---------------------------- | 23 | 1 | 1 | 1 | 1 | 123 | 1 | |
| --------------------------------TAGGTTGCTAAGCTATTCCTGT----------------------------- | 22 | 1 | - | - | - | 5 | - | |
| --------------------------------TAGGTTGCTAAGCTATTCCTG------------------------------ | 21 | - | - | - | - | 2 | - | |
| ---------------------------------AGGTTGCTAAGCTATTCCTGTG---------------------------- | 22 | - | - | - | - | 2 | - | |
| --------------------------------TAGGTTGCTAAGCTATTCCT------------------------------- | 20 | - | - | 1 | - | - | - | |
| ----------------------------------------TAAGCTATTCCTGTGCCTG------------------------ | 19 | - | - | - | - | 1 | - | |
| -----------------------------TCCTAGGTTGCTAAGCTATTCCTGTG---------------------------- | 26 | - | - | - | - | 1 | - | |
| rat | ggcgtcttcagagcccgagccaagcagagtccTAGGTTGCTAAGCTATTCCTGTGcctgtccttggagctgctggttgagctg | |||||||
| *********************************************************************************** | ||||||||
| rat | (((....((((((((((((.((.(((.((.....((((....))))....)).))).))..))))).))).))))....))). | 0.870 -26.40 | ||||||
| rat | chromosome:10:92627591:92627673:1 | intergenic |
novel_cloningHIGH_shortStem_nonpairedHIGH (2 loci)
block758 [novel_cloningHIGH_shortStem_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.020 | no | no | 0.42/0.52 | 18/23/0.91 | 0.0 | 0.5 | 71 | 0 | 3 | 0 | 3 | 6 | 5arm | 1 | nd | 0.35 | 3 | 88 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ----UUGAACC-------------------------------------------------------- | 85 | miR-434 | ||
| seed | -----UGAACCA------------------------------------------------------- | 3 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T4S2 | |||
| ---TTTGAACCATCACTCAGCTCCC------------------------------------------ | 22 | 22 | 33 | - | |
| ---TTTGAACCATCACTCAGCTC-------------------------------------------- | 20 | 16 | 2 | - | |
| ---TTTGAACCATCACTCAGC---------------------------------------------- | 18 | 4 | 2 | 1 | |
| ---TTTGAACCATCACTCAGCTCCCC----------------------------------------- | 23 | 3 | 1 | - | |
| ----TTGAACCATCACTCAGCTCCC------------------------------------------ | 21 | - | 3 | - | |
| ---TTTGAACCATCACTCAGCT--------------------------------------------- | 19 | - | 1 | - | |
| rat | ggaTTTGAACCATCACTCAGCTCCCctcagcaattgcctttgaaagctagagtggtagtctactcca | ||||
| ******************************************************************* | |||||
| rat | (((...((...(((((((((((.......((....)).......)))).)))))))..))...))). | 0.990 -18.84 | |||
| rat | chromosome:10:1410677:1410743:-1 | intergenic |
block1600515 [novel_cloningHIGH_shortStem_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.561 | no | no | 0.48/0.53 | 18/26/0.78 | 0.0 | 0.0 | 44 | 0 | 7 | 0 | 4 | 30 | 3arm | 1 | nd | 0.36 | 3 | 73 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | ---------------------------------------------------------------------------------------------CACUACU------------------ | 56 | novel | ||||||
| seed | -------------------------------------------------------------------------------------------------ACUCAGG-------------- | 8 | novel | ||||||
| seed | --------------------------------------------------------------------------------------------UCACUAC------------------- | 6 | novel | ||||||
| seed | ------------------------------------------------------------------------------------------CUUCACU--------------------- | 3 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T4S2 | T5S1 | T5S2 | |||
| --------------------------------------------------------------------------------------------TCACTACTCAGGGGCTTTAGAG---- | 22 | 2 | 3 | - | 12 | - | 32 | - | |
| -------------------------------------------------------------------------------------------TTCACTACTCAGGGGCTTTAGAGG--- | 24 | - | 1 | 1 | 2 | - | 2 | - | |
| ------------------------------------------------------------------------------------------------TACTCAGGGGCTTTAGAGG--- | 19 | - | - | - | - | - | 4 | 1 | |
| --------------------------------------------------------------------------------------------TCACTACTCAGGGGCTTT-------- | 18 | - | 1 | - | 1 | - | 3 | - | |
| ------------------------------------------------------------------------------------------------TACTCAGGGGCTTTAGAG---- | 18 | - | - | - | - | - | 3 | - | |
| --------------------------------------------------------------------------------------------TCACTACTCAGGGGCTTTAGA----- | 21 | - | - | - | 1 | - | 1 | - | |
| -----------------------------------------------------------------------------------------TCTTCACTACTCAGGGGCTTTAGAGG--- | 26 | - | - | - | 1 | 1 | - | - | |
| -----------------------------------------------------------------------------------------TCTTCACTACTCAGGGGCT---------- | 19 | - | - | 1 | - | - | - | - | |
| rat | ggcacatggagcctggtttgctcagttagtggaaagtttgggaaaaggggagaactgaggggaggcccatcacctagacacacacctgctctTCACTACTCAGGGGCTTTAGAGgccc | ||||||||
| ********************************************************************************************************************** | |||||||||
| rat | (((...(((((((((((.((...(((..(((....(((((((.....(((....((......)).)))....)))))))...)))..)))...))..)))...))))))))...))). | 0.510 -35.20 | |||||||
| rat | chromosome:4:164240626:164240743:-1 | intergenic |
novel_cloningOK_5varHIGH_loopOverlap_bulgeHIGH (2 loci)
block998279 [novel_cloningOK_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.012 | no | no | 0.42/0.54 | 18/26/0.74 | 1.9 | 2.8 | 19 | 0 | 6 | 0 | 36 | -23 | 3arm | 1 | nd | 0.28 | 4 | 19 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | --------------------------------------------------------GAACUUC---------------------------------------------------- | 9 | novel | |||||
| seed | -----------------------------------------------------AGUGAAC------------------------------------------------------- | 8 | novel | |||||
| seed | ---------------------------------------------------------AACUUCU--------------------------------------------------- | 1 | novel | |||||
| seed | -----------------------------------------------------------CUUCUGA------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S2 | T4S1 | T5S1 | T5S2 | |||
| ----------------------------------------------------TAGTGAACTTCTGACTCCAGA------------------------------------------ | 21 | - | 1 | - | - | 3 | 1 | |
| -------------------------------------------------------TGAACTTCTGACTCCAGATCCCCC------------------------------------ | 24 | 1 | - | - | 1 | 1 | - | |
| -------------------------------------------------------TGAACTTCTGACTCCAGATCCCC------------------------------------- | 23 | - | - | - | - | 3 | - | |
| -------------------------------------------------------TGAACTTCTGACTCCAGATC---------------------------------------- | 20 | - | - | - | - | 2 | - | |
| --------------------------------------------------------GAACTTCTGACTCCAGATC---------------------------------------- | 19 | - | - | - | - | 1 | - | |
| ----------------------------------------------------TAGTGAACTTCTGACTCCAGATCCCC------------------------------------- | 26 | - | - | - | - | 1 | - | |
| ----------------------------------------------------TAGTGAACTTCTGACTCCAG------------------------------------------- | 20 | 1 | - | - | - | - | - | |
| -------------------------------------------------------TGAACTTCTGACTCCAGAT----------------------------------------- | 19 | - | - | - | - | 1 | - | |
| ----------------------------------------------------------ACTTCTGACTCCAGATCC--------------------------------------- | 18 | - | - | 1 | - | - | - | |
| ----------------------------------------------------TAGTGAACTTCTGACTCCAGATCCC-------------------------------------- | 25 | - | - | - | - | 1 | - | |
| rat | ggtggaccatccgtgacttactgcccaaagcctgggaactggattcggaaacTAGTGAACTTCTGACTCCAGATCCCCCaggccaaggatggcactgagaaagcccttgggtacc | |||||||
| ******************************************************************************************************************* | ||||||||
| rat | ((((..(((...((..((((.((((....(((((((..(((((.(((((....((....))))))).)))))....))))))).......)))).))))...))...))).)))) | 0.460 -42.60 | ||||||
| rat | chromosome:1:128303029:128303143:1 | intergenic |
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