other hairpins
novel_cloningOK_5varHIGH_loopOverlap_bulgeHIGH (2 loci)
block1060473 [novel_cloningOK_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.051 | no | no | 0.52/0.61 | 18/23/0.83 | 3.0 0.0 | 3.8 0.0 | 8 7 | 0 0 | 6 2 | 0 0 | 12 1 | -18 18 | 3arm 3arm | 1 1 | nd nd | 0.48 0.30 | 3 5 | 23 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | ------------------------------------------ACACUGG----------------------------------- | 7 | novel | |||||
| seed | ----------------------------------------------------------------AGACCCA------------- | 7 | novel | |||||
| seed | ---------------------------------------CAUACAC-------------------------------------- | 3 | novel | |||||
| seed | ---------------------------------------------------GGCUCCG-------------------------- | 2 | novel | |||||
| seed | -----------------------------------------------GGAUGGC------------------------------ | 1 | novel | |||||
| seed | -------------------------------------------------------------GUUAGAC---------------- | 1 | novel | |||||
| seed | ----------------------------------------AUACACU------------------------------------- | 1 | novel | |||||
| seed | ------------------------------------------------------------------ACCCACU----------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S2 | T2S1 | T2S2 | T3S2 | T4S2 | T5S1 | |||
| ---------------------------------------------------------------TAGACCCACTCAGGTGGACA- | 20 | - | - | - | - | - | 7 | |
| -----------------------------------------TACACTGGATGGCTCCGGATGTT-------------------- | 23 | - | 1 | - | 1 | - | 4 | |
| --------------------------------------GCATACACTGGATGGCTCC--------------------------- | 19 | - | - | 1 | - | - | 2 | |
| --------------------------------------------------TGGCTCCGGATGTTAGACCCAC------------ | 22 | - | - | - | - | - | 2 | |
| -----------------------------------------------------------------GACCCACTCAGGTGGACA- | 18 | 1 | - | - | - | - | - | |
| ----------------------------------------------TGGATGGCTCCGGATGTTAG------------------ | 20 | 1 | - | - | - | - | - | |
| ---------------------------------------CATACACTGGATGGCTCCGGATG---------------------- | 23 | - | - | - | - | - | 1 | |
| -----------------------------------------TACACTGGATGGCTCCGGAT----------------------- | 20 | - | - | - | - | 1 | - | |
| ------------------------------------------------------------TGTTAGACCCACTCAGGTGGACA- | 23 | - | - | - | - | - | 1 | |
| rat | tgtgtcccttgatattctcccaccttgcatagcacccagcaTACACTGGATGGCTCCGGATGTTAGACCCACTCAGGTGGACAt | |||||||
| ************************************************************************************ | ||||||||
| rat | .(((((((((((...(((..((((......(((..((((......))))...)))..)).))..))).....))))).)))))) | 0.830 -23.30 | ||||||
| rat | chromosome:20:5506296:5506379:-1 | intergenic |
novel_cloningOK_DicerNOK_loopOverlap (2 loci)
sblock3351 [novel_cloningOK_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.052 | no | no | 0.47/0.60 | 18/25/0.73 | 0.5 0.0 | 0.0 0.0 | 12 1 | 0 0 | 3 1 | 0 0 | 41 14 | -13 11 | 3arm_loop 3arm | 2 3 | nd nd | 0.65 0.24 | 10 2 | 26 | 3 | 0 | 1 |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------------------GACCAAC----------------------------------------------------- | 12 | novel | ||
| seed | ---------------------------------------------GACUAGA--------------------------------------------------------------- | 4 | novel | ||
| seed | ---------------------------------------------------AUCUGAC--------------------------------------------------------- | 4 | novel | ||
| seed | -----------------------------------------------------CUGACCA------------------------------------------------------- | 3 | novel | ||
| seed | --------------------------------------------------------ACCAACC---------------------------------------------------- | 2 | novel | ||
| seed | -----------------------------------------------------------------------------GGACCCA------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ------------------------------------------------------TGACCAACCCACTGAAGCAG----------------------------------------- | 20 | - | 1 | 9 | |
| ----------------------------------------------------TCTGACCAACCCACTGAAGCAG----------------------------------------- | 22 | - | - | 3 | |
| --------------------------------------------------GATCTGACCAACCCACTGAAGCAG----------------------------------------- | 24 | - | - | 2 | |
| ------------------------------------------------------TGACCAACCCACTGAAGC------------------------------------------- | 18 | 1 | - | 1 | |
| --------------------------------------------TGACTAGATCTGACCAACCCAC------------------------------------------------- | 22 | - | - | 2 | |
| -------------------------------------------------------GACCAACCCACTGAAGCAG----------------------------------------- | 19 | - | - | 2 | |
| --------------------------------------------------GATCTGACCAACCCACTGA---------------------------------------------- | 19 | 1 | - | - | |
| --------------------------------------------TGACTAGATCTGACCAACCCACTG----------------------------------------------- | 24 | - | - | 1 | |
| ----------------------------------------------------------------------------TGGACCCAGGAGAGGCTGAGAACTG-------------- | 25 | - | - | 1 | |
| --------------------------------------------TGACTAGATCTGACCAACC---------------------------------------------------- | 19 | - | - | 1 | |
| --------------------------------------------------GATCTGACCAACCCACTGAAGC------------------------------------------- | 22 | - | - | 1 | |
| rat | ggcgggatggttcagggaaggtctccggcctcccagggtcaggctgactagaTCTGACCAACCCACTGAAGCAGcctggacccaggagaggctgagaactggctgcagctaggcc | ||||
| ******************************************************************************************************************* | |||||
| rat | (((....((((((((...((.(((.(((((((((.(((((((((((..(((..............)))...))))))).)))).)).)))))))))).))..))).))))).))) | 0.960 -49.34 | |||
| rat | chromosome:12:44299904:44300018:-1 | intergenic |
sblock3601 [novel_cloningOK_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.052 | no | no | 0.47/0.60 | 18/25/0.73 | 0.5 0.0 | 0.0 0.0 | 12 1 | 0 0 | 3 1 | 0 0 | 41 14 | -13 11 | 3arm_loop 3arm | 2 3 | nd nd | 0.65 0.24 | 10 2 | 26 | 3 | 0 | 1 |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------------------GACCAAC----------------------------------------------------- | 12 | novel | ||
| seed | ---------------------------------------------GACUAGA--------------------------------------------------------------- | 4 | novel | ||
| seed | ---------------------------------------------------AUCUGAC--------------------------------------------------------- | 4 | novel | ||
| seed | -----------------------------------------------------CUGACCA------------------------------------------------------- | 3 | novel | ||
| seed | --------------------------------------------------------ACCAACC---------------------------------------------------- | 2 | novel | ||
| seed | -----------------------------------------------------------------------------GGACCCA------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ------------------------------------------------------TGACCAACCCACTGAAGCAG----------------------------------------- | 20 | - | 1 | 9 | |
| ----------------------------------------------------TCTGACCAACCCACTGAAGCAG----------------------------------------- | 22 | - | - | 3 | |
| --------------------------------------------------GATCTGACCAACCCACTGAAGCAG----------------------------------------- | 24 | - | - | 2 | |
| ------------------------------------------------------TGACCAACCCACTGAAGC------------------------------------------- | 18 | 1 | - | 1 | |
| --------------------------------------------TGACTAGATCTGACCAACCCAC------------------------------------------------- | 22 | - | - | 2 | |
| -------------------------------------------------------GACCAACCCACTGAAGCAG----------------------------------------- | 19 | - | - | 2 | |
| --------------------------------------------------GATCTGACCAACCCACTGA---------------------------------------------- | 19 | 1 | - | - | |
| --------------------------------------------TGACTAGATCTGACCAACCCACTG----------------------------------------------- | 24 | - | - | 1 | |
| ----------------------------------------------------------------------------TGGACCCAGGAGAGGCTGAGAACTG-------------- | 25 | - | - | 1 | |
| --------------------------------------------TGACTAGATCTGACCAACC---------------------------------------------------- | 19 | - | - | 1 | |
| --------------------------------------------------GATCTGACCAACCCACTGAAGC------------------------------------------- | 22 | - | - | 1 | |
| rat | ggcgggatggttcagggaaggtctccggcctcccagggtcaggctgactagaTCTGACCAACCCACTGAAGCAGcctggacccaggagaggctgagaactggctgcagctaggcc | ||||
| ******************************************************************************************************************* | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000056932 ENSRNOG00000037566 RGD1560398_predicted | ||||
| rat | (((....((((((((...((.(((.(((((((((.(((((((((((..(((..............)))...))))))).)))).)).)))))))))).))..))).))))).))) | 0.960 -49.34 | |||
| rat | chromosome:12:43043099:43043213:1 | Same_strand|Intronic_non-coding|ENSRNOT00000056932|ENSRNOG00000037566 ## ENSRNOG00000037566|protein_coding|RGD1560398_predicted| |
novel_cloningOK_multiarm (2 loci)
block1469485 [novel_cloningOK_multiarm]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.494 | no | no | 0.28/0.57 | 18/24/0.81 | 0.0 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 0.0 | 1 1 1 5 20 | 0 0 0 0 0 | 1 1 1 2 4 | 0 0 0 0 0 | 1 7 17 25 29 | 30 21 11 7 2 | 5arm 5arm 5arm 5arm 5arm_loop_3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.30 0.30 0.48 0.58 0.50 | 2 3 3 3 4 | 43 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ------------------------------AGGAUAC--------------------------------------------------------------------- | 27 | novel | |||
| seed | --------------------------GACUAGG------------------------------------------------------------------------- | 6 | novel | |||
| seed | -----------------------------------ACACAUU---------------------------------------------------------------- | 3 | novel | |||
| seed | --------------------------------GAUACAC------------------------------------------------------------------- | 2 | novel | |||
| seed | -----------------------------------------UCAAUAA---------------------------------------------------------- | 1 | novel | |||
| seed | -------------------------------------ACAUUCA-------------------------------------------------------------- | 1 | miR-181a/181b/181c/181d | |||
| seed | --AAGACUU------------------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | --------UGGAGAC------------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | ------------------CGGAGGC--------------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T5S1 | T5S2 | |||
| -----------------------------TAGGATACACATTCAATAAG--------------------------------------------------------- | 20 | 1 | - | 20 | 1 | |
| -------------------------TGACTAGGATACACATTCA-------------------------------------------------------------- | 19 | 1 | - | 5 | - | |
| ----------------------------------TACACATTCAATAAGCCGGT---------------------------------------------------- | 20 | - | - | 3 | - | |
| -----------------------------TAGGATACACATTCAATAAGCCG------------------------------------------------------ | 23 | - | 2 | - | - | |
| -------------------------------GGATACACATTCAATAAGCCGGT---------------------------------------------------- | 23 | - | - | 2 | - | |
| -----------------------------TAGGATACACATTCAATAAGC-------------------------------------------------------- | 21 | - | - | 1 | - | |
| -TAAGACTTGGAGACTCTCGG------------------------------------------------------------------------------------- | 20 | - | - | 1 | - | |
| -----------------TCGGAGGCTGACTAGGATACACA------------------------------------------------------------------ | 23 | - | - | 1 | - | |
| -------TTGGAGACTCTCGGAGGCTGACT---------------------------------------------------------------------------- | 23 | - | - | 1 | - | |
| ----------------------------------------TTCAATAAGCCGGTAGGTA----------------------------------------------- | 19 | - | - | 1 | - | |
| ------------------------------------CACATTCAATAAGCCGGTAG-------------------------------------------------- | 20 | - | - | 1 | - | |
| -----------------------------TAGGATACACATTCAATA----------------------------------------------------------- | 18 | - | - | - | 1 | |
| -----------------------------TAGGATACACATTCAATAAGCCGG----------------------------------------------------- | 24 | - | - | 1 | - | |
| rat | gtaagacttggagactctcggaggctgacTAGGATACACATTCAATAAGccggtaggtaggctggatcatgtacaataaagatctgctgatctccacatcgatggc | |||||
| ********************************************************************************************************** | ||||||
| rat | ....((..((((((.((.((((..((...((...((((...((....((((........)))).))...))))...)).)).))))..))))))))..))...... | 0.610 -24.30 | ||||
| rat | chromosome:3:76942825:76942930:1 | intergenic |
sblock34 [novel_cloningOK_multiarm]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.325 | no | no | 0.26/0.36 | 19/23/0.79 | 0.0 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 0.0 | 2 1 1 6 1 | 0 0 0 0 0 | 1 1 1 2 1 | 0 0 0 0 0 | 0 18 41 33 17 | 26 11 -3 2 20 | 5arm 5arm 3arm_loop 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.36 0.32 0.37 0.23 0.35 | 3 3 3 3 3 | 14 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------------------------AACCAUU----------------------------------------------- | 7 | novel | ||
| seed | --------------------------------------------------------UAACCAU------------------------------------------------ | 2 | novel | ||
| seed | -AAACAUG------------------------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | ---------------------------------------------------------------------------AGAUAUA----------------------------- | 1 | novel | ||
| seed | -------------------AACUUUU------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------AACUUAA---------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S2 | T4S1 | T5S1 | |||
| --------------------------------------------------------TAACCATTGATTAGCATCTAGA--------------------------------- | 22 | - | - | 6 | |
| TAAACATGCAGTGGGATTTAAC----------------------------------------------------------------------------------------- | 22 | - | - | 2 | |
| --------------------------------------------------------TAACCATTGATTAGCATCT------------------------------------ | 19 | - | - | 1 | |
| -------------------------------------------------------TTAACCATTGATTAGCATCTAGA--------------------------------- | 23 | - | - | 1 | |
| -------------------------------------------------------TTAACCATTGATTAGCATCT------------------------------------ | 20 | - | 1 | - | |
| --------------------------------------------------------------------------TAGATATAACCTCCAATGTG----------------- | 20 | 1 | - | - | |
| ---------------------------------------------------TAACTTAACCATTGATTAG----------------------------------------- | 19 | - | - | 1 | |
| ------------------TAACTTTTGAGGTGTTAAA-------------------------------------------------------------------------- | 19 | - | - | 1 | |
| rat | TAAACATGCAGTGGGATTTAACttttgaggtgttaaatatggtggtgggtataactTAACCATTGATTAGCATCTAGAtataacctccaatgtgcttcaattctggtttac | ||||
| *************************************************************************************************************** | |||||
| ------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000044049 ENSRNOG00000040148 | ||||
| rat | (((((..(((.((((..(((...(((.(((((((((..(((((...((......))..)))))...))))))))))))..)))..))))...)))..........))))). | 0.710 -22.40 | |||
| rat | chromosome:1:13906490:13906600:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000044049|ENSRNOG00000040148 ## ENSRNOG00000040148|protein_coding|| |
novel_cloningOK_multiarm_5varHIGH_loopOverlap_randfoldOK_bulgeHIGH (2 loci)
block1499784 [novel_cloningOK_multiarm_5varHIGH_loopOverlap_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.30/0.50 | 18/23/0.72 | 1.1 0.8 | 1.3 0.0 | 7 8 | 0 0 | 1 3 | 0 0 | 3 14 | -10 -18 | 5arm_loop_3arm 5arm_loop_3arm | 2 2 | nd nd | 0.19 0.32 | 4 4 | 18 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ---------------GUGACAA------------------- | 7 | novel | ||
| seed | --------GUUUACA-------------------------- | 4 | novel | ||
| seed | -----------------GACAAUA----------------- | 3 | novel | ||
| seed | ------AUGUUUA---------------------------- | 2 | novel | ||
| seed | ----CUAUGUU------------------------------ | 1 | novel | ||
| seed | ------------------ACAAUAC---------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T5S1 | T5S2 | |||
| --------------AGTGACAATACTGTAGGGCAGA----- | 22 | 1 | 5 | - | |
| -------TGTTTACAGTGACAATACT--------------- | 19 | - | 3 | - | |
| ----------------TGACAATACTGTAGGGCAGA----- | 20 | - | 3 | - | |
| -----TATGTTTACAGTGACAATACTG-------------- | 22 | - | 1 | - | |
| -----------------GACAATACTGTAGGGCAG------ | 18 | - | - | 1 | |
| ---ACTATGTTTACAGTGACAA------------------- | 19 | - | 1 | - | |
| -----TATGTTTACAGTGACAATACTGT------------- | 23 | - | 1 | - | |
| -------TGTTTACAGTGACAATACTGT------------- | 21 | - | 1 | - | |
| --------------AGTGACAATACTGTAGGGCAGAT---- | 23 | - | 1 | - | |
| rat | ggcactaTGTTTACAGTGACAATACTGTAGGGCAGAtgcca | ||||
| ***************************************** | |||||
| rat | ((((...(((((((((((....))))))))).))..)))). | 1.000 -14.90 | |||
| rat | chromosome:3:141754572:141754612:1 | intergenic |
block1499834 [novel_cloningOK_multiarm_5varHIGH_loopOverlap_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.30/0.50 | 18/23/0.72 | 1.1 0.8 | 1.3 0.0 | 7 8 | 0 0 | 1 3 | 0 0 | 3 14 | -10 -18 | 5arm_loop_3arm 5arm_loop_3arm | 2 2 | nd nd | 0.19 0.32 | 4 4 | 18 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ---------------GUGACAA------------------- | 7 | novel | ||
| seed | --------GUUUACA-------------------------- | 4 | novel | ||
| seed | -----------------GACAAUA----------------- | 3 | novel | ||
| seed | ------AUGUUUA---------------------------- | 2 | novel | ||
| seed | ----CUAUGUU------------------------------ | 1 | novel | ||
| seed | ------------------ACAAUAC---------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T5S1 | T5S2 | |||
| --------------AGTGACAATACTGTAGGGCAGA----- | 22 | 1 | 5 | - | |
| -------TGTTTACAGTGACAATACT--------------- | 19 | - | 3 | - | |
| ----------------TGACAATACTGTAGGGCAGA----- | 20 | - | 3 | - | |
| -----TATGTTTACAGTGACAATACTG-------------- | 22 | - | 1 | - | |
| -----------------GACAATACTGTAGGGCAG------ | 18 | - | - | 1 | |
| ---ACTATGTTTACAGTGACAA------------------- | 19 | - | 1 | - | |
| -----TATGTTTACAGTGACAATACTGT------------- | 23 | - | 1 | - | |
| -------TGTTTACAGTGACAATACTGT------------- | 21 | - | 1 | - | |
| --------------AGTGACAATACTGTAGGGCAGAT---- | 23 | - | 1 | - | |
| rat | ggcactaTGTTTACAGTGACAATACTGTAGGGCAGAtgcca | ||||
| ***************************************** | |||||
| rat | ((((...(((((((((((....))))))))).))..)))). | 1.000 -14.90 | |||
| rat | chromosome:3:141756380:141756420:1 | intergenic |
novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_randfoldOK (2 loci)
block881059 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.35/0.59 | 19/23/0.73 | 0.0 1.9 | 1.0 3.0 | 4 7 | 0 0 | 2 3 | 0 0 | 26 30 | -4 -18 | 5arm_loop 3arm_loop | 1 2 | nd nd | 0.21 0.38 | 2 5 | 11 | 3 | 0 | -4 |
| reads | miRBase family seed | ||||
| seed | ---------------------------GACACCU---------------------------------------------------------------- | 4 | novel | ||
| seed | ----------------------------------------GGUCCCC--------------------------------------------------- | 4 | novel | ||
| seed | ----------------------------------------------CGUGAUU--------------------------------------------- | 1 | novel | ||
| seed | -------------------------------------------CCCCGUG------------------------------------------------ | 1 | novel | ||
| seed | ------------------------------------GUCUGGU------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| --------------------------TGACACCTTTGTCTGGTCCCCG-------------------------------------------------- | 22 | - | - | 2 | |
| ---------------------------------------TGGTCCCCGTGATTTTGAT---------------------------------------- | 19 | - | - | 2 | |
| -----------------------------------TGTCTGGTCCCCGTGATTTTG------------------------------------------ | 21 | - | 1 | - | |
| ---------------------------------------TGGTCCCCGTGATTTTGATTT-------------------------------------- | 21 | 1 | - | - | |
| --------------------------TGACACCTTTGTCTGGTCCCC--------------------------------------------------- | 21 | - | - | 1 | |
| ------------------------------------------TCCCCGTGATTTTGATTTCA------------------------------------ | 20 | - | - | 1 | |
| --------------------------TGACACCTTTGTCTGGTCC----------------------------------------------------- | 19 | - | 1 | - | |
| ---------------------------------------TGGTCCCCGTGATTTTGATTTC------------------------------------- | 22 | - | - | 1 | |
| ---------------------------------------------CCGTGATTTTGATTTCAAGAAGT------------------------------ | 23 | - | - | 1 | |
| rat | gagtcacatgtgtgactctctagccaTGACACCTTTGTCTGGTCCCCGTGATTTTGATTTCAAGAAGTgtcatggtatctgagagtgccagggactca | ||||
| ************************************************************************************************** | |||||
| rat | (((((...((.((.((((((..(((((((((((((.(((.((((.....))))..)))...)))..))))))))))....))))))))))..))))). | 0.570 -37.60 | |||
| rat | chromosome:1:129001807:129001904:-1 | intergenic |
sblock11696 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.32/0.50 | 18/22/0.77 | 1.3 1.5 2.5 0.0 0.0 | 1.3 0.5 1.5 0.0 0.0 | 6 2 2 1 1 | 0 0 0 0 0 | 2 2 2 1 1 | 0 0 0 0 0 | 3 16 34 23 14 | 11 0 -18 9 17 | 5arm 5arm 3arm_loop 3arm 3arm | 1 1 1 3 3 | nd nd nd nd nd | 0.10 0.33 0.64 0.50 0.32 | 1 6 7 8 3 | 13 | 4 | 0 | -17 |
| reads | miRBase family seed | |||||
| seed | --------UGGACUC-------------------------------------------------------------------------------- | 4 | novel | |||
| seed | ----CCCUUGG------------------------------------------------------------------------------------ | 3 | novel | |||
| seed | -----------------GUUAAGC----------------------------------------------------------------------- | 1 | novel | |||
| seed | ---------------------------------------------------------------UUUUGCU------------------------- | 1 | novel | |||
| seed | -----------------------------------GAUUUUC----------------------------------------------------- | 1 | novel | |||
| seed | --------------------AAGCGAC-------------------------------------------------------------------- | 1 | novel | |||
| seed | -------------------------------------------------------GGCUUCC--------------------------------- | 1 | novel | |||
| seed | ----------------------------------------UCCUUGU------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S2 | T5S1 | |||
| -------TTGGACTCCTGTTAAGCGAC-------------------------------------------------------------------- | 20 | - | - | - | 4 | |
| ---TCCCTTGGACTCCTGTTAAG------------------------------------------------------------------------ | 20 | 1 | - | - | 2 | |
| ---------------------------------------TTCCTTGTACTCTTGTGGCT------------------------------------ | 20 | - | - | 1 | - | |
| --------------------------------------------------------------TTTTTGCTTCATTATGGAG-------------- | 19 | - | - | - | 1 | |
| ----------------------------------TGATTTTCCTTGTACTCTTGTG--------------------------------------- | 22 | - | - | - | 1 | |
| ----------------TGTTAAGCGACCATTCCCTGA---------------------------------------------------------- | 21 | - | - | - | 1 | |
| ------------------------------------------------------TGGCTTCCTTTTTGCTTC----------------------- | 18 | - | - | - | 1 | |
| -------------------TAAGCGACCATTCCCTGAT--------------------------------------------------------- | 19 | - | 1 | - | - | |
| rat | gccTCCCTTGGACTCCTGTTAAGCGACcattccctgattttccttgtactcttgtggcttcctttttgcttcattatggagtcctgagatgaggc | |||||
| *********************************************************************************************** | ||||||
| rat | (((((.((((((((((.((.((((((((((......((.......))......))))........)))))).))...))))))).)))..))))) | 0.850 -28.10 | ||||
| rat | chromosome:8:57741469:57741563:-1 | intergenic |
novel_cloningOK_multiarm_DicerNOK_5varHIGH_mirtron (2 loci)
sblock11912 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.095 | no | no | 0.45/0.58 | 19/23/0.90 | 1.3 0.8 | 1.7 2.2 | 6 4 | 0 0 | 3 3 | 0 0 | 18 13 | 6 7 | 5arm 3arm | 1 1 | 45 1 | 0.26 0.23 | 2 2 | 10 | 4 | 1 | 0 |
| reads | miRBase family seed | |||||
| seed | ---------------------AGACCAG------------------------------------------------------------------------ | 4 | novel | |||
| seed | ------------------------------------------------------------------AACUGGU--------------------------- | 3 | novel | |||
| seed | -------------------GCAGACC-------------------------------------------------------------------------- | 2 | novel | |||
| seed | -----------------------------------------------------------------UAACUGG---------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S2 | T5S1 | T5S2 | |||
| -----------------------------------------------------------------TAACTGGTTGGTTGGTCTCTCA------------- | 22 | 1 | 1 | - | 1 | |
| --------------------CAGACCAGACCTTGCCTGTAAG---------------------------------------------------------- | 22 | - | - | - | 2 | |
| ------------------TGCAGACCAGACCTTGCCTGT------------------------------------------------------------- | 21 | - | - | 2 | - | |
| --------------------CAGACCAGACCTTGCCTGTAAGA--------------------------------------------------------- | 23 | - | 1 | - | - | |
| --------------------CAGACCAGACCTTGCCTGT------------------------------------------------------------- | 19 | - | - | 1 | - | |
| ----------------------------------------------------------------CTAACTGGTTGGTTGGTCTC---------------- | 20 | - | - | - | 1 | |
| rat | agtgaacttcctttccccTGCAGACCAGACCTTGCCTGTAAGAtccaggttctaccttttggaaCTAACTGGTTGGTTGGTCTCTCAggctggctgccgc | |||||
| **************************************************************************************************** | ||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>> | ENSRNOT00000028435 ENSRNOG00000020948 Pthr1 | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>> | ENSRNOT00000035998 ENSRNOG00000020948 Pthr1 | |||||
| rat | .(((.....((.....((((.((((((.(((..(((.((.((.((((((........)))))).)).)).))).)))))))))..))))..))....))) | 0.610 -30.00 | ||||
| rat | chromosome:8:115103805:115103904:-1 | Same_strand|Intronic_coding|ENSRNOT00000035998|ENSRNOG00000020948 ## ENSRNOG00000020948|protein_coding|Pthr1|Parathyroid hormone/parathyroid hormone-related peptide receptor precursor (PTH/PTHr receptor) (PTH/PTHrP type I receptor). [Source:UniProtKB/Swiss-Prot;Acc:P25961] |
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