other hairpins
novel_cloningOK_multiarm_DicerNOK_5varHIGH_mirtron (2 loci)
sblock11985 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.149 | no | no | 0.52/0.70 | 19/23/0.90 | 1.2 0.0 0.0 | 3.0 0.0 1.3 | 6 1 3 | 0 0 0 | 3 1 3 | 0 0 0 | 25 47 33 | 5 -15 2 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | 34 14 0 | 0.26 0.43 0.25 | 2 5 2 | 10 | 4 | 0 | -1 |
| reads | miRBase family seed | |||||
| seed | ----------------------------GGGUGGG---------------------------------------------------------------------------------- | 3 | novel | |||
| seed | ---------------------------------------------------------------GCCCUGG----------------------------------------------- | 3 | novel | |||
| seed | --------------------------GUGGGUG------------------------------------------------------------------------------------ | 2 | novel | |||
| seed | ------------------------------------------------UCACAUG-------------------------------------------------------------- | 1 | novel | |||
| seed | ---------------------------UGGGUGG----------------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T4S1 | T5S1 | |||
| --------------------------------------------------------------TGCCCTGGCTTCCTCTCCCCAG--------------------------------- | 22 | - | - | 1 | 1 | |
| ---------------------------TGGGTGGGGAAAGACAGGCATTC------------------------------------------------------------------- | 23 | - | - | - | 1 | |
| ---------------------------TGGGTGGGGAAAGACAGGCA---------------------------------------------------------------------- | 20 | 1 | - | - | - | |
| -----------------------------------------------TTCACATGTTCAGCATGCCCTGG----------------------------------------------- | 23 | - | 1 | - | - | |
| ---------------------------TGGGTGGGGAAAGACAGGCATT-------------------------------------------------------------------- | 22 | 1 | - | - | - | |
| --------------------------------------------------------------TGCCCTGGCTTCCTCTCCCC----------------------------------- | 20 | 1 | - | - | - | |
| --------------------------GTGGGTGGGGAAAGACAGGCA---------------------------------------------------------------------- | 21 | - | 1 | - | - | |
| -------------------------AGTGGGTGGGGAAAGACAGG------------------------------------------------------------------------ | 20 | 1 | - | - | - | |
| -------------------------AGTGGGTGGGGAAAGACAG------------------------------------------------------------------------- | 19 | - | - | - | 1 | |
| rat | cagtggctctcaaacctaaggccagAGTGGGTGGGGAAAGACAGGCATTCACATGTTCAGCATGCCCTGGCTTCCTCTCCCCAGatctcttcgttgggcagctaaagagctccctga | |||||
| ********************************************************************************************************************* | ||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000009975 ENSRNOG00000006663 Usp2 | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000036051 ENSRNOG00000006663 Usp2 | |||||
| rat | (((.((((((....(((((((..(((.((((..(((.(((.((((......((((.....)))).)))).))).)))..))))..)))..)).))))).......))))))..))). | 0.420 -36.50 | ||||
| rat | chromosome:8:47074331:47074447:1 | Same_strand|Intronic_coding|ENSRNOT00000036051|ENSRNOG00000006663 ## ENSRNOG00000006663|protein_coding|Usp2|ubiquitin specific peptidase 2 [Source:RefSeq_peptide;Acc:NP_446226] |
novel_cloningOK_multiarm_DicerNOK_randfoldOK_nonpairedHIGH_bulgeHIGH (2 loci)
sblock11706 [novel_cloningOK_multiarm_DicerNOK_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.39/0.55 | 18/21/0.93 | 0.0 0.0 | 0.0 0.0 | 1 12 | 0 0 | 1 1 | 0 0 | 34 11 | -3 22 | 5arm_loop 3arm | 1 1 | nd nd | 0.33 0.43 | 4 6 | 15 | 2 | 0 | 0 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------------------------GGGAUUG------------------------ | 12 | novel | |
| seed | ------------------------------------------------------------------------------GGAUUGC----------------------- | 2 | novel | |
| seed | -----------------------------------CCUUACA------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ----------------------------------------------------------------------------TGGGATTGCAGGCTAGATGAG----------- | 21 | - | 12 | |
| -----------------------------------------------------------------------------GGGATTGCAGGCTAGATGAG----------- | 20 | - | 2 | |
| ----------------------------------GCCTTACATAATGTGGAT-------------------------------------------------------- | 18 | 1 | - | |
| rat | tgaggccttgggtggatctgttccctttgaagaggccttacataatgtggataacataaatgctaatggttacttcTGGGATTGCAGGCTAGATGAGcccaagtctca | |||
| ************************************************************************************************************ | ||||
| rat | .((((.(((((((..((((((((((...((((..(((((((((..((((.....)))).))).))).)))..)))).))))......)).))))..))))))))))). | 1.000 -38.60 | ||
| rat | chromosome:8:57744984:57745091:-1 | intergenic |
sblock2812 [novel_cloningOK_multiarm_DicerNOK_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.53/0.60 | 19/22/0.78 | 0.0 0.0 | 0.0 1.1 | 1 17 | 0 0 | 1 5 | 0 0 | 8 23 | 24 4 | 5arm 3arm | 1 1 | nd nd | 0.32 0.47 | 4 7 | 23 | 5 | -20 | -16 |
| reads | miRBase family seed | ||||||
| seed | ------------------------------------------------------------------CUCAAGA------------------------------------- | 22 | novel | ||||
| seed | ---------CAGUCUC---------------------------------------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T2S1 | T2S2 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------------------------------------------TCTCAAGACACCCCTTCCCCT------------------------ | 21 | 5 | 2 | 1 | 1 | - | |
| -----------------------------------------------------------------TCTCAAGACACCCCTTCCCCTC----------------------- | 22 | - | 6 | - | 1 | - | |
| -----------------------------------------------------------------TCTCAAGACACCCCTTCCC-------------------------- | 19 | 2 | 2 | - | - | - | |
| -----------------------------------------------------------------TCTCAAGACACCCCTTCCCC------------------------- | 20 | - | - | 1 | - | 1 | |
| --------CCAGTCTCAAGAGGTGTCT----------------------------------------------------------------------------------- | 19 | 1 | - | - | - | - | |
| rat | gaggctagccagtctcaagaggtgtctaggaagagggtgccagaccgtctgttttagaattcagaTCTCAAGACACCCCTTCCCCTCccacttcttgaacttgtcgtctc | ||||||
| ************************************************************************************************************** | |||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000014153 ENSRNOG00000010635 Igfbp4 | ||||||
| rat | (((((..((.(((.((((((((((....(((((.(((((.......(((((..........))))).......)))))))))).....))))))))))))).)).))))) | 0.980 -40.54 | |||||
| rat | chromosome:10:87824997:87825106:1 | Same_strand|Intronic_coding|ENSRNOT00000014153|ENSRNOG00000010635 ## ENSRNOG00000010635|protein_coding|Igfbp4|Insulin-like growth factor-binding protein 4 precursor (IGFBP-4) (IBP- 4) (IGF-binding protein 4). [Source:UniProtKB/Swiss-Prot;Acc:P21744] |
novel_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH (2 loci)
sblock10125 [novel_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.359 | no | no | 0.38/0.57 | 19/23/0.90 | 1.5 0.0 0.0 0.0 0.0 | 1.5 0.0 0.0 0.0 0.0 | 6 1 1 1 1 | 0 0 0 0 0 | 2 1 1 1 1 | 0 0 0 0 0 | 2 16 28 34 23 | 7 -4 -14 -22 1 | 5arm 5arm_loop 5arm_loop_3arm 5arm_loop_3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.15 0.35 0.48 0.52 0.30 | 2 5 7 7 3 | 10 | 2 | -5 | -12 |
| reads | miRBase family seed | |||
| seed | --------UCUUCUU----------------------------------------------------------------------- | 2 | novel | |
| seed | -----------------------------------CACAAAU-------------------------------------------- | 1 | novel | |
| seed | ------GGUCUUC------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------GUGGGAG-------------------------------------------------------------- | 1 | novel | |
| seed | -------GUCUUCU------------------------------------------------------------------------ | 1 | novel | |
| seed | --------------------------------------------GUACUGA----------------------------------- | 1 | novel | |
| seed | ---------CUUCUUG---------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------AUACCUC-------------------------------------------------- | 1 | novel | |
| seed | ---CCUGGUC---------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -------GTCTTCTTGTGTGGGAGCTCT---------------------------------------------------------- | 21 | - | 2 | |
| ----------------------------------TCACAAATGGGTACTGATGCTTT----------------------------- | 23 | 1 | - | |
| ----------------TGTGGGAGCTCTTATACCTCACA----------------------------------------------- | 23 | 1 | - | |
| -----TGGTCTTCTTGTGTGGGAG-------------------------------------------------------------- | 19 | - | 1 | |
| --------TCTTCTTGTGTGGGAGCTCT---------------------------------------------------------- | 20 | - | 1 | |
| ----------------------------TATACCTCACAAATGGGTACT------------------------------------- | 21 | - | 1 | |
| ------GGTCTTCTTGTGTGGGAGCT------------------------------------------------------------ | 20 | 1 | - | |
| --TCCTGGTCTTCTTGTGTGGGAGC------------------------------------------------------------- | 23 | - | 1 | |
| -------------------------------------------GGTACTGATGCTTTATCCAC----------------------- | 20 | - | 1 | |
| rat | gcTCCTGGTCTTCTTGTGTGGGAGCTCTTATACCTCACAAATGGGTACTGATGCTTTATCCACgggggatgtcacccttgtttgct | |||
| ************************************************************************************** | ||||
| rat | ((....(((..((((.(((((((((((...(((((.......)))))..)).))))...))))).))))....))).......)). | 0.850 -21.90 | ||
| rat | chromosome:6:122572821:122572906:-1 | intergenic |
sblock5522 [novel_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.520 | no | no | 0.41/0.62 | 18/24/0.80 | 6.1 0.0 1.3 | 10.0 0.0 2.0 | 11 1 3 | 0 0 0 | 4 1 1 | 0 0 0 | 0 37 10 | 17 -4 -1 | 5arm 5arm_loop 3arm | 2 2 2 | nd nd nd | 0.54 0.36 0.24 | 4 5 2 | 15 | 4 | 1 | 0 |
| reads | miRBase family seed | |||||
| seed | --UCUCCUU---------------------------------------------------------------------------------------- | 3 | novel | |||
| seed | -------------------------------------------------------------GCUGCGC----------------------------- | 2 | novel | |||
| seed | ------------CCUACCA------------------------------------------------------------------------------ | 2 | novel | |||
| seed | ---------------ACCAUGU--------------------------------------------------------------------------- | 2 | novel | |||
| seed | -----------------------------------------------------------------CGCUGGC------------------------- | 1 | novel | |||
| seed | ---CUCCUUU--------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | -UUCUCCU----------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | --------------------------------------ACCAGAA---------------------------------------------------- | 1 | novel | |||
| seed | -----CCUUUUU------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | ---------UUUCCUA--------------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S2 | T4S1 | T5S1 | |||
| -TTCTCCTTTTTCCTACCATGTGTG------------------------------------------------------------------------ | 24 | 1 | 1 | - | 1 | |
| ------------------------------------------------------------TGCTGCGCTGGCTTCTAGGAG---------------- | 21 | - | - | - | 2 | |
| -----------TCCTACCATGTGTGCTTTG------------------------------------------------------------------- | 19 | 1 | - | - | 1 | |
| --------TTTTCCTACCATGTGTGCTTTGGA----------------------------------------------------------------- | 24 | - | - | - | 1 | |
| ----------------------------------------------------------------GCGCTGGCTTCTAGGAGCTTCCT---------- | 23 | - | - | - | 1 | |
| --------------TACCATGTGTGCTTTGGATACTGT----------------------------------------------------------- | 24 | - | - | - | 1 | |
| ----TCCTTTTTCCTACCATGTGTG------------------------------------------------------------------------ | 21 | - | - | - | 1 | |
| CTTCTCCTTTTTCCTACC------------------------------------------------------------------------------- | 18 | 1 | - | - | - | |
| --------------TACCATGTGTGCTTTGGATACT------------------------------------------------------------- | 22 | - | - | - | 1 | |
| --TCTCCTTTTTCCTACCATGTGT------------------------------------------------------------------------- | 22 | - | - | 1 | - | |
| -------------------------------------TACCAGAAGTTGCTGAGTTTTG-------------------------------------- | 22 | - | - | - | 1 | |
| rat | CTTCTCCTTTTTCCTACCATGTGTGCTTTGGATACTGTACCAGAAGTTGCTGAGTTTTGcTGCTGCGCTGGCTTCTAGGAGCTTCCTacatccagga | |||||
| ************************************************************************************************* | ||||||
| rat | ................((.((..((....(((....((.(((((((((((..(((......)))..)).))))))).)).)).)))..))..)))). | 0.460 -21.20 | ||||
| rat | chromosome:18:63558058:63558154:-1 | intergenic |
novel_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH_loopOverlap_bulgeHIGH (2 loci)
sblock3304 [novel_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.086 | no | no | 0.40/0.55 | 19/24/0.86 | 1.7 1.1 | 1.7 2.6 | 7 7 | 0 0 | 1 2 | 0 0 | 0 0 | 13 -17 | 5arm 3arm_loop | 3 3 | nd nd | 0.65 0.30 | 10 4 | 14 | 2 | 0 | 23 |
| reads | miRBase family seed | |||
| seed | -CACUAAC-------------------------------------------------------- | 4 | novel | |
| seed | -----AACCCUG---------------------------------------------------- | 3 | novel | |
| seed | ---------------------------------------CUGACCU------------------ | 3 | novel | |
| seed | -----------------------------------------GACCUAA---------------- | 2 | novel | |
| seed | ------------------------------------UGUCUGA--------------------- | 1 | novel | |
| seed | --------------------------------------UCUGACC------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T5S1 | |||
| ACACTAACCCTGTGAGTCTG-------------------------------------------- | 20 | - | 4 | |
| --------------------------------------TCTGACCTAAGGCAATAAAG------ | 20 | - | 3 | |
| ----TAACCCTGTGAGTCTGCCCA---------------------------------------- | 20 | - | 3 | |
| ----------------------------------------TGACCTAAGGCAATAAAGCCTCAC | 24 | - | 2 | |
| -------------------------------------GTCTGACCTAAGGCAATAA-------- | 19 | 1 | - | |
| -----------------------------------GTGTCTGACCTAAGGCAAT---------- | 19 | - | 1 | |
| rat | ACACTAACCCTGTGAGTCTGCCCAtccctgcctgggtgTCTGACCTAAGGCAATAAAGCCTCAC | |||
| **************************************************************** | ||||
| rat | ...........(((((.((.........(((((((((.....))))).))))....)).))))) | 0.720 -15.72 | ||
| rat | chromosome:12:44280705:44280768:-1 | intergenic |
sblock3631 [novel_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.086 | no | no | 0.40/0.55 | 19/24/0.86 | 1.7 1.1 | 1.7 2.6 | 7 7 | 0 0 | 1 2 | 0 0 | 0 0 | 13 -17 | 5arm 3arm_loop | 3 3 | nd nd | 0.65 0.30 | 10 4 | 14 | 2 | 0 | 23 |
| reads | miRBase family seed | |||
| seed | -CACUAAC-------------------------------------------------------- | 4 | novel | |
| seed | -----AACCCUG---------------------------------------------------- | 3 | novel | |
| seed | ---------------------------------------CUGACCU------------------ | 3 | novel | |
| seed | -----------------------------------------GACCUAA---------------- | 2 | novel | |
| seed | ------------------------------------UGUCUGA--------------------- | 1 | novel | |
| seed | --------------------------------------UCUGACC------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T5S1 | |||
| ACACTAACCCTGTGAGTCTG-------------------------------------------- | 20 | - | 4 | |
| --------------------------------------TCTGACCTAAGGCAATAAAG------ | 20 | - | 3 | |
| ----TAACCCTGTGAGTCTGCCCA---------------------------------------- | 20 | - | 3 | |
| ----------------------------------------TGACCTAAGGCAATAAAGCCTCAC | 24 | - | 2 | |
| -------------------------------------GTCTGACCTAAGGCAATAA-------- | 19 | 1 | - | |
| -----------------------------------GTGTCTGACCTAAGGCAAT---------- | 19 | - | 1 | |
| rat | ACACTAACCCTGTGAGTCTGCCCAtccctgcctgggtgTCTGACCTAAGGCAATAAAGCCTCAC | |||
| **************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000056932 ENSRNOG00000037566 RGD1560398_predicted | |||
| rat | ...........(((((.((.........(((((((((.....))))).))))....)).))))) | 0.720 -15.72 | ||
| rat | chromosome:12:43051293:43051356:1 | Same_strand|Intronic_non-coding|ENSRNOT00000056932|ENSRNOG00000037566 ## ENSRNOG00000037566|protein_coding|RGD1560398_predicted| |
novel_cloningOK_multiarm_DicerOK_5varHIGH_loopOverlap_bulgeHIGH (2 loci)
sblock11630 [novel_cloningOK_multiarm_DicerOK_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.172 | no | no | 0.40/0.58 | 18/24/0.81 | 0.0 0.0 1.5 0.7 0.1 | 0.0 0.0 1.3 0.1 0.8 | 5 5 6 7 8 | 0 0 0 0 0 | 2 2 2 3 4 | 0 0 0 0 0 | 34 42 25 9 2 | -3 -10 -17 11 20 | 5arm_loop 5arm_loop_3arm 3arm_loop 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.52 0.60 0.30 0.39 0.29 | 4 6 3 4 4 | 36 | 6 | 1 | 1 |
| reads | miRBase family seed | |||||||
| seed | --------------------------------------------------------------------------------CAGCCGA--------------- | 7 | novel | |||||
| seed | -----------------------------------UCCACUC------------------------------------------------------------ | 7 | novel | |||||
| seed | -------------------------------------------GAGCAGC---------------------------------------------------- | 6 | novel | |||||
| seed | -----------------------------------------------------------------------UCCAGCC------------------------ | 5 | novel | |||||
| seed | ---------------------------------------------------------AGCCAAU-------------------------------------- | 4 | novel | |||||
| seed | -----------------------------------------CUGAGCA------------------------------------------------------ | 2 | novel | |||||
| seed | ----------------------------------------------------------------------GUCCAGC------------------------- | 1 | novel | |||||
| seed | ---------------------------------------------------------------------------GCCUUCA-------------------- | 1 | novel | |||||
| seed | -----------------------------------------------------CUUUAGC------------------------------------------ | 1 | novel | |||||
| seed | ----------------------------------------------------ACUUUAG------------------------------------------- | 1 | novel | |||||
| seed | -------------------------------------------------------------------------------UCAGCCG---------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T3S2 | T4S1 | T4S2 | T5S1 | |||
| ------------------------------------------TGAGCAGCGCACTTTAGCCA---------------------------------------- | 20 | 1 | - | - | - | - | 5 | |
| ----------------------------------TTCCACTCTGAGCAGCGCACT----------------------------------------------- | 21 | - | - | - | 1 | - | 5 | |
| -------------------------------------------------------------------------------TCAGCCGATTTGTATAGTGAG-- | 21 | 1 | - | 1 | - | - | 3 | |
| ----------------------------------------------------------------------GTCCAGCCTTCAGCCGATTTGT---------- | 22 | - | 2 | - | - | 1 | 2 | |
| --------------------------------------------------------TAGCCAATGCCAGTGTCCAG-------------------------- | 20 | - | - | - | - | - | 3 | |
| ----------------------------------------TCTGAGCAGCGCACTTTAG------------------------------------------- | 19 | 1 | - | - | - | - | 1 | |
| -------------------------------------------------------------------------------TCAGCCGATTTGTATAGTG---- | 19 | - | - | - | - | - | 2 | |
| ------------------------------------------------------------------------------TTCAGCCGATTTGTATAGTG---- | 20 | - | 1 | - | - | - | - | |
| --------------------------------------------------------TAGCCAATGCCAGTGTCCAGC------------------------- | 21 | - | 1 | - | - | - | - | |
| ---------------------------------------------------CACTTTAGCCAATGCCAG--------------------------------- | 18 | - | - | - | - | - | 1 | |
| ---------------------------------------------------------------------TGTCCAGCCTTCAGCCGATTTGT---------- | 23 | - | - | - | - | - | 1 | |
| ----------------------------------------------------ACTTTAGCCAATGCCAGTGTCCAG-------------------------- | 24 | - | - | - | - | - | 1 | |
| ----------------------------------TTCCACTCTGAGCAGCGCA------------------------------------------------- | 19 | - | - | - | - | - | 1 | |
| --------------------------------------------------------------------------AGCCTTCAGCCGATTTGTA--------- | 19 | - | - | - | - | - | 1 | |
| rat | gctttcaactcaacaaagaaactgttcctgctgcTTCCACTCTGAGCAGCGCACTTTAGCCAATGCCAGTGTCCAGCCTTCAGCCGATTTGTATAGTGAGca | |||||||
| ****************************************************************************************************** | ||||||||
| rat | ((((...(((..(((((....(((.....((((.....((.(((.(((..((......))...)))))).)).))))...)))....)))))..))))))). | 0.640 -23.50 | ||||||
| rat | chromosome:8:57719153:57719254:-1 | intergenic |
sblock677 [novel_cloningOK_multiarm_DicerOK_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.182 | no | no | 0.38/0.58 | 18/24/0.77 | 0.0 0.0 0.0 3.3 1.0 | 0.0 2.0 0.0 2.5 3.0 | 1 3 1 6 2 | 0 0 0 0 0 | 1 2 1 1 2 | 0 0 0 0 0 | 0 22 34 24 9 | 31 7 -5 -18 6 | 5arm 5arm 5arm_loop_3arm 5arm_loop_3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.55 0.58 0.42 0.25 0.57 | 8 11 4 4 11 | 13 | 4 | 3 | 3 |
| reads | miRBase family seed | |||||
| seed | -----------------------AGGACAA------------------------------------------------------------------- | 3 | novel | |||
| seed | -----------------------------------------------GGAGACC------------------------------------------- | 3 | novel | |||
| seed | ------------------------------------------------------AAAGUCC------------------------------------ | 2 | novel | |||
| seed | -----------------------------------------------------CAAAGUC------------------------------------- | 1 | novel | |||
| seed | ------------------------------------------------------------------GUACCCA------------------------ | 1 | novel | |||
| seed | -ACGAAAA----------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | ----------------------------------------------------------------CAGUACC-------------------------- | 1 | novel | |||
| seed | -----------------------------------UAGUCUG------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T2S2 | T5S1 | |||
| -----------------------------------------------------CAAAGTCCCTGCAGTACCCA------------------------ | 20 | - | - | - | 2 | |
| ----------------------------------------------AGGAGACCAAAGTCCCTGCAGT----------------------------- | 22 | - | - | - | 2 | |
| ----------------------TAGGACAATCCCTTAGTCTGTTTT--------------------------------------------------- | 24 | - | - | - | 2 | |
| ----------------------TAGGACAATCCCTTAGTC--------------------------------------------------------- | 18 | 1 | - | - | - | |
| ----------------------------------------------------CCAAAGTCCCTGCAGTACC-------------------------- | 19 | - | - | - | 1 | |
| ---------------------------------------------------------------GCAGTACCCATATATATCC--------------- | 19 | - | - | 1 | - | |
| CACGAAAAAGAGACTCAAGTCA--------------------------------------------------------------------------- | 22 | - | - | - | 1 | |
| ----------------------------------TTAGTCTGTTTTAGGAGACCAAAG--------------------------------------- | 24 | - | - | - | 1 | |
| ----------------------------------------------AGGAGACCAAAGTCCCTGCA------------------------------- | 20 | - | - | - | 1 | |
| -----------------------------------------------------------------AGTACCCATATATATCCCTGTGT--------- | 23 | - | 1 | - | - | |
| rat | CACGAAAAAGAGACTCAAGTCATAGGACAATCCCTTAGTCTGTTTTAGGAGACCAAAGTCCCTGCAGTACCCATATATATCCCTGTGTacacagctc | |||||
| ************************************************************************************************* | ||||||
| rat | .........(((.((...((((((((...........((((((...(((.(((....)))))))))).))...........)))))).))..))))) | 0.870 -18.95 | ||||
| rat | chromosome:1:124837890:124837986:-1 | intergenic |
novel_cloningOK_shortStem_5varHIGH_loopOverlap (2 loci)
block1751050 [novel_cloningOK_shortStem_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.099 | no | no | 0.35/0.43 | 21/24/1.00 | 1.5 | 1.0 | 11 | 0 | 2 | 0 | 2 | -4 | 5arm_loop | 2 | nd | 0.18 | 2 | 11 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------GACUUUG------------------------------------------------------------- | 6 | novel | |
| seed | ------AUGACUU--------------------------------------------------------------- | 3 | novel | |
| seed | ---CAUAUGA------------------------------------------------------------------ | 1 | novel | |
| seed | --------------GUGUUCU------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -------TGACTTTGTGTTCTTGAGTGAG----------------------------------------------- | 22 | 1 | 3 | |
| -----TATGACTTTGTGTTCTTGAGTGAG----------------------------------------------- | 24 | 1 | 2 | |
| -------TGACTTTGTGTTCTTGAGTGA------------------------------------------------ | 21 | - | 2 | |
| -------------TGTGTTCTTGAGTGAGCAAGA------------------------------------------ | 21 | - | 1 | |
| --TCATATGACTTTGTGTTCTTGAG--------------------------------------------------- | 23 | - | 1 | |
| rat | ccTCATATGACTTTGTGTTCTTGAGTGAGCAAGAaaagcatgcgttcgtctccctggacgctcagtcacagctgag | |||
| **************************************************************************** | ||||
| rat | .((((..(((((..((((((..((((((((.............))))).)))...))))))..)))))....)))) | 0.600 -22.22 | ||
| rat | chromosome:5:79198106:79198181:-1 | intergenic |
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