other hairpins
novel_lenNOK_Multihit_5varHIGH_randfoldOK_bulgeHIGH (2 loci)
block963094 [novel_lenNOK_Multihit_5varHIGH_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.50/0.53 | 18/19/0.00 | 1.5 | 1.0 | 2 | 0 | 1 | 0 | 9 | 12 | 3arm | 22 | nd | 0.21 | 4 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------------------------CUCUGGU---------------------- | 1 | novel |
| seed | -----------------------------------------------------------------------------------UGGUUUG------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -------------------------------------------------------------------------------GCTCTGGTTTGTCTTGGGT----------- | 19 | 1 | |
| ----------------------------------------------------------------------------------CTGGTTTGTCTTGGGTAC--------- | 18 | 1 | |
| rat | tttggaccatcataagtataacccaggaagagttcaggggcatcaaaagtgttagcaccatagtacaggttcagcatttGCTCTGGTTTGTCTTGGGTACtatggccaa | ||
| ************************************************************************************************************* | |||
| ----------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | ||
| rat | .((((.((((....(((...((((((((.....(((.(((((.....((((((...(((........)))..))))))))))))))....))))))))))))))))))) | 0.990 -32.00 |
| rat | chromosome:1:51602883:51602991:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
novel_lenNOK_Multihit_mirtron_nonpairedHIGH_bulgeHIGH (2 loci)
block1945603 [novel_lenNOK_Multihit_mirtron_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.348 | no | no | 0.68/0.70 | 19/20/0.33 | 0.0 0.0 | 0.0 0.0 | 1 2 | 0 0 | 1 2 | 0 0 | 6 0 | 1 8 | 3arm 3arm | 11 15 | 2 4 | 0.55 0.44 | 4 4 | 3 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------CCUUCGG----------- | 2 | novel | ||
| seed | --------------------------------CUUGCCG------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S1 | T5S1 | T5S2 | |||
| --------------------------------------GCCTTCGGCTCCTAGGACC | 19 | - | 1 | 1 | |
| -------------------------------CCTTGCCGCCTTCGGCTCCT------ | 20 | 1 | - | - | |
| rat | gtctctccagtcgcagcctccgggaccatctCCTTGCCGCCTTCGGCTCCTAGGACC | ||||
| ********************************************************* | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000010824 ENSRNOG00000008008 Garnl1 | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>> | ENSRNOT00000010684 ENSRNOG00000008008 Garnl1 | ||||
| rat | ((((....(((((..((....((((.....))))....))...)))))....)))). | 0.410 -12.80 | |||
| rat | chromosome:6:76153752:76153808:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000010684|ENSRNOG00000008008 ## Same_strand|Intronic_coding|ENSRNOT00000010824|ENSRNOG00000008008 ## ENSRNOG00000008008|protein_coding|Garnl1|GTPase-activating RapGAP domain-like 1 (GAP-related-interacting partner to E12) (GRIPE) (Tuberin-like protein 1). [Source:UniProtKB/Swiss-Prot;Acc:O55007] |
block987815 [novel_lenNOK_Multihit_mirtron_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.348 | no | no | 0.68/0.70 | 19/20/0.33 | 0.0 0.0 | 0.0 0.0 | 1 2 | 0 0 | 1 2 | 0 0 | 6 0 | 1 8 | 3arm 3arm | 11 15 | 2 4 | 0.55 0.44 | 4 4 | 3 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------CCUUCGG----------- | 2 | novel | ||
| seed | --------------------------------CUUGCCG------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S1 | T5S1 | T5S2 | |||
| --------------------------------------GCCTTCGGCTCCTAGGACC | 19 | - | 1 | 1 | |
| -------------------------------CCTTGCCGCCTTCGGCTCCT------ | 20 | 1 | - | - | |
| rat | gtctctccagtcgcagcctccgggaccatctCCTTGCCGCCTTCGGCTCCTAGGACC | ||||
| ********************************************************* | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>> | ENSRNOT00000021365 ENSRNOG00000015960 | ||||
| rat | ((((....(((((..((....((((.....))))....))...)))))....)))). | 0.410 -12.80 | |||
| rat | chromosome:1:101125314:101125370:1 | Same_strand|Boundary_coding|ENSRNOT00000021365|ENSRNOG00000015960 ## ENSRNOG00000015960|protein_coding|| |
novel_lenNOK_Multihit_shortStem_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (2 loci)
block688539 [novel_lenNOK_Multihit_shortStem_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.510 | no | no | 0.56/0.61 | 18/23/0.33 | 1.3 | 0.3 | 3 | 0 | 2 | 0 | 4 | -4 | 5arm_loop | 13 | nd | 0.52 | 5 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------CCACGAC-------------------------------------------------------- | 2 | novel | |
| seed | -----UGCACCA------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T3S1 | |||
| --------ACCACGACCTCCACCAAA---------------------------------------------- | 18 | - | 2 | |
| ----CTGCACCACGACCTCCACCAAAG--------------------------------------------- | 23 | 1 | - | |
| rat | ggtgCTGCACCACGACCTCCACCAAAGcccatgtaaagaggtgatttcatgaaggcagaaagaaaaatacca | |||
| ************************************************************************ | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000021263 ENSRNOG00000022202 NP_001099630.1 | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000032177 ENSRNOG00000022202 NP_001099630.1 | |||
| rat | ((((((((..((.((....((((................))))...)).))...)))).........)))). | 0.750 -11.39 | ||
| rat | chromosome:18:12611076:12611147:-1 | Same_strand|Intronic_coding|ENSRNOT00000021263|ENSRNOG00000022202 ## ENSRNOG00000022202|protein_coding|NP_001099630.1|similar to TRS85 homolog (predicted) (RGD1309102_predicted), mRNA [Source:RefSeq_dna;Acc:NM_001106160] |
block1459912 [novel_lenNOK_Multihit_shortStem_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.580 | no | no | 0.56/0.61 | 18/23/0.33 | 1.3 | 0.3 | 3 | 0 | 2 | 0 | 0 | -4 | 5arm_loop | 13 | nd | 0.52 | 5 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----CCACGAC------------------------------------------ | 2 | novel | |
| seed | -UGCACCA---------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T3S1 | |||
| ----ACCACGACCTCCACCAAA-------------------------------- | 18 | - | 2 | |
| CTGCACCACGACCTCCACCAAAG------------------------------- | 23 | 1 | - | |
| rat | CTGCACCACGACCTCCACCAAAGcccatgtaaagaggtgatttcatgaaggcag | |||
| ****************************************************** | ||||
| rat | ((((..((.((....((((................))))...)).))...)))) | 0.910 -8.49 | ||
| rat | chromosome:3:57250945:57250998:1 | intergenic |
novel_lenNOK_Multihit_shortStem_mirtron (2 loci)
block8556 [novel_lenNOK_Multihit_shortStem_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.242 | no | no | 0.50/0.50 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 2 | 10 | 5arm | 21 | 4 | 0.28 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---UGGCAAA---------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T2S1 | |||
| --ATGGCAAAACCGGAAGAG------------------------------------------------------ | 18 | 1 | |
| rat | ccATGGCAAAACCGGAAGAGtctacaatgtcacccagcatgcagtgggcatcatggtgaacaagcatgtcaagg | ||
| ************************************************************************** | |||
| >>>>>>>>>>>>>>>>+++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++>>> | ENSRNOT00000005282 ENSRNOG00000003976 | ||
| rat | ((.(((((..((((...((((((((.((((......))))...)))))).)).)))).........))))).)) | 0.430 -17.30 |
| rat | chromosome:10:16911367:16911440:-1 | Same_strand|Boundary_coding|ENSRNOT00000005282|ENSRNOG00000003976 ## ENSRNOG00000003976|protein_coding|| |
block981822 [novel_lenNOK_Multihit_shortStem_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.131 | no | no | 0.56/0.56 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 0 | 13 | 5arm | 12 | 0 | 0.17 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -GGCCAAG---------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S2 | |||
| TGGCCAAGCTTTCGATCG------------------------------------------------------------ | 18 | 1 | |
| rat | TGGCCAAGCTTTCGATCGatcgtcccagtgcagagaggctactgggggaacaagattggcaagccccacactgtgcca | ||
| ****************************************************************************** | |||
| >>>>>>>>>>>>>>>>>>>++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000047772 ENSRNOG00000037380 O55212_RAT | ||
| >>>>>>>>>>>>>>>>>>>++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000044776 ENSRNOG00000037380 O55212_RAT | ||
| rat | .(((((.((((((((((..((.(((((((((......)).)))))))))....)))))).)))).......)).))). | 0.900 -25.90 |
| rat | chromosome:1:88007351:88007428:1 | Same_strand|Boundary_coding|ENSRNOT00000047772|ENSRNOG00000037380 ## ENSRNOG00000037380|protein_coding|O55212_RAT|Ribosomal protein S2. [Source:UniProtKB/TrEMBL;Acc:O55212] |
novel_lenNOK_cloningHIGH_5varHIGH_loopOverlap_bulgeHIGH (2 loci)
block1067082 [novel_lenNOK_cloningHIGH_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.271 | no | no | 0.42/0.61 | 18/26/0.61 | 1.1 | 2.5 | 22 | 0 | 6 | 0 | 24 | -4 | 3arm | 1 | nd | 0.30 | 4 | 70 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | -------------------------------------------------GAUUCAU--------------------------------------- | 29 | novel | |||||
| seed | ----------------------------------------------UCUGAUU------------------------------------------ | 28 | novel | |||||
| seed | -----------------------------------------------CUGAUUC----------------------------------------- | 4 | novel | |||||
| seed | ----------------------------------------GGCUCUU------------------------------------------------ | 3 | novel | |||||
| seed | ------------------------------------------------UGAUUCA---------------------------------------- | 1 | novel | |||||
| seed | --------------------------------------------CUUCUGA-------------------------------------------- | 1 | novel | |||||
| seed | ----------------------------------------------------UCAUGUG------------------------------------ | 1 | novel | |||||
| seed | ---------------------------------------------UUCUGAU------------------------------------------- | 1 | novel | |||||
| seed | -------------------------------------------UCUUCUG--------------------------------------------- | 1 | novel | |||||
| seed | -----------------------------------------------------CAUGUGA----------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T4S2 | T5S1 | |||
| ---------------------------------------------TTCTGATTCATGTGATCCC------------------------------- | 19 | 4 | 1 | 2 | 1 | - | 8 | |
| ------------------------------------------------TGATTCATGTGATCCCCTCCAAG------------------------ | 23 | - | - | - | - | - | 14 | |
| ------------------------------------------------TGATTCATGTGATCCCCTCCAA------------------------- | 22 | 2 | - | - | - | - | 4 | |
| ---------------------------------------------TTCTGATTCATGTGATCCCC------------------------------ | 20 | - | 1 | - | - | - | 3 | |
| ------------------------------------------------TGATTCATGTGATCCCCTCCA-------------------------- | 21 | - | - | - | - | 1 | 2 | |
| ---------------------------------------------TTCTGATTCATGTGATCCCCTCCA-------------------------- | 24 | - | - | - | - | - | 3 | |
| ---------------------------------------TGGCTCTTCTGATTCATGTGA----------------------------------- | 21 | 1 | - | - | - | - | 2 | |
| ------------------------------------------------TGATTCATGTGATCCCCTC---------------------------- | 19 | - | - | - | - | - | 3 | |
| ------------------------------------------------TGATTCATGTGATCCCCTCC--------------------------- | 20 | - | - | - | - | - | 2 | |
| ----------------------------------------------TCTGATTCATGTGATCCCCTC---------------------------- | 21 | - | - | - | - | - | 2 | |
| ---------------------------------------------TTCTGATTCATGTGATCCCCTCCAA------------------------- | 25 | 1 | - | - | - | - | 1 | |
| ----------------------------------------------------TCATGTGATCCCCTCCAAGCCCC-------------------- | 23 | - | - | - | - | - | 1 | |
| ------------------------------------------------TGATTCATGTGATCCCCT----------------------------- | 18 | - | - | - | - | - | 1 | |
| --------------------------------------------CTTCTGATTCATGTGATCCCCTCC--------------------------- | 24 | - | - | - | - | - | 1 | |
| ----------------------------------------------TCTGATTCATGTGATCCC------------------------------- | 18 | - | - | - | - | - | 1 | |
| ----------------------------------------------TCTGATTCATGTGATCCCCTCCAAG------------------------ | 25 | - | - | - | - | - | 1 | |
| ------------------------------------------CTCTTCTGATTCATGTGATCCCCTC---------------------------- | 25 | - | - | - | - | - | 1 | |
| -------------------------------------------TCTTCTGATTCATGTGATCCC------------------------------- | 21 | - | - | - | - | 1 | - | |
| -----------------------------------------------CTGATTCATGTGATCCCCTCCAA------------------------- | 23 | - | - | - | - | - | 1 | |
| ---------------------------------------------TTCTGATTCATGTGATCCCCTC---------------------------- | 22 | - | - | - | - | - | 1 | |
| ---------------------------------------------TTCTGATTCATGTGATCCCCTCCAAG------------------------ | 26 | - | - | 1 | - | - | - | |
| ---------------------------------------------TTCTGATTCATGTGATCCCCTCC--------------------------- | 23 | - | 1 | - | - | - | - | |
| ---------------------------------------------------TTCATGTGATCCCCTCCAA------------------------- | 19 | - | 1 | - | - | - | - | |
| rat | gccgtaaacattgaggctttttttttttttggaggggggtggctcTTCTGATTCATGTGATCCCCTCCAAGccccccacactcacacagcaggtg | |||||||
| *********************************************************************************************** | ||||||||
| rat | (((........((((............((((((((((((((..((....))..)))....))))))))))).........)))).......))). | 0.410 -25.56 | ||||||
| rat | chromosome:20:13195314:13195408:-1 | intergenic |
block1848468 [novel_lenNOK_cloningHIGH_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.163 | no | no | 0.33/0.55 | 18/26/0.53 | 6.0 | 8.6 | 29 | 0 | 5 | 0 | 13 | -24 | 3arm | 1 | nd | 0.26 | 4 | 51 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -------------------------------------------------------------GUGAGUC------------------------------ | 16 | novel | ||||
| seed | --------------------------------------------------AAGCAUU----------------------------------------- | 14 | novel | ||||
| seed | ---------------------------------------------------AGCAUUU---------------------------------------- | 6 | novel | ||||
| seed | ---------------------------------------------------------------GAGUCGU---------------------------- | 4 | novel | ||||
| seed | -----------------------------------------------------------CUGUGAG-------------------------------- | 4 | novel | ||||
| seed | ----------------------------------------------------------UCUGUGA--------------------------------- | 3 | novel | ||||
| seed | --------------------------------------------------------UUUCUGU----------------------------------- | 1 | novel | ||||
| seed | -----------------------------------------------GAUAAGC-------------------------------------------- | 1 | novel | ||||
| seed | ----------------------------------------------------GCAUUUU--------------------------------------- | 1 | novel | ||||
| seed | ----------------------------------------------------------------------GAGUACU--------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S1 | T4S2 | T5S1 | |||
| ------------------------------------------------------------TGTGAGTCGTGAGTACTGGAGGTGA------------- | 25 | 1 | - | - | - | 4 | |
| -------------------------------------------------TAAGCATTTTCTGTGAGTCGTGAGT------------------------ | 25 | 2 | - | - | - | 2 | |
| ------------------------------------------------------------TGTGAGTCGTGAGTACTGGAG----------------- | 21 | 1 | - | - | - | 3 | |
| -------------------------------------------------TAAGCATTTTCTGTGAGTC------------------------------ | 19 | 1 | - | - | - | 3 | |
| --------------------------------------------------------------TGAGTCGTGAGTACTGGAG----------------- | 19 | - | - | - | - | 3 | |
| --------------------------------------------------AAGCATTTTCTGTGAGTCGT---------------------------- | 20 | - | 1 | - | - | 2 | |
| ------------------------------------------------------------TGTGAGTCGTGAGTACTGGAGG---------------- | 22 | - | - | - | - | 2 | |
| ------------------------------------------------------------TGTGAGTCGTGAGTACTGG------------------- | 19 | - | - | 1 | - | 1 | |
| -------------------------------------------------TAAGCATTTTCTGTGAGTCGTG--------------------------- | 22 | - | - | - | - | 2 | |
| ------------------------------------------------------------TGTGAGTCGTGAGTACTGGAGGT--------------- | 23 | - | 1 | - | 1 | - | |
| --------------------------------------------------AAGCATTTTCTGTGAGTCGTGAG------------------------- | 23 | - | - | - | - | 2 | |
| ---------------------------------------------------------TTCTGTGAGTCGTGAGTACT--------------------- | 20 | - | - | - | - | 2 | |
| -------------------------------------------------TAAGCATTTTCTGTGAGTCGTGA-------------------------- | 23 | - | - | - | - | 2 | |
| ----------------------------------------------------------TCTGTGAGTCGTGAGTACT--------------------- | 19 | 1 | - | - | - | 1 | |
| --------------------------------------------------AAGCATTTTCTGTGAGTCGTGAGT------------------------ | 24 | - | - | - | - | 1 | |
| --------------------------------------------------------------TGAGTCGTGAGTACTGGAGGTGAGGA---------- | 26 | - | - | - | - | 1 | |
| ------------------------------------------------------------TGTGAGTCGTGAGTACTGGA------------------ | 20 | - | - | - | - | 1 | |
| ----------------------------------------------------------TCTGTGAGTCGTGAGTACTGGAGGT--------------- | 25 | 1 | - | - | - | - | |
| -------------------------------------------------TAAGCATTTTCTGTGAGT------------------------------- | 18 | - | - | - | 1 | - | |
| -------------------------------------------------------TTTTCTGTGAGTCGTGAGTACTGG------------------- | 24 | - | - | - | - | 1 | |
| ---------------------------------------------------------TTCTGTGAGTCGTGAGTACTG-------------------- | 21 | - | 1 | - | - | - | |
| ---------------------------------------------------------------------TGAGTACTGGAGGTGAGGA---------- | 19 | - | - | - | - | 1 | |
| ---------------------------------------------------AGCATTTTCTGTGAGTCGTGAGT------------------------ | 23 | - | - | - | - | 1 | |
| -------------------------------------------------TAAGCATTTTCTGTGAGTCGTGAG------------------------- | 24 | - | - | 1 | - | - | |
| ----------------------------------------------AGATAAGCATTTTCTGTGAGTC------------------------------ | 22 | - | - | - | - | 1 | |
| ----------------------------------------------------------TCTGTGAGTCGTGAGTACTGG------------------- | 21 | - | - | - | - | 1 | |
| rat | gcgtccgggggtctccggaacccttaaggaaagccgtctgcacagaagaTAAGCATTTTCTGTGAGTCGTGAGTACTGGAGGTGAggaagccctgagc | ||||||
| ************************************************************************************************** | |||||||
| rat | ((.((..((((..(((.....((((.((......((.((.((((((((((....)))))))))))).))......)).))))...)))..)))))))) | 0.980 -33.00 | |||||
| rat | chromosome:5:79245005:79245102:1 | intergenic |
novel_lenNOK_cloningHIGH_Multihit_nonpairedHIGH_bulgeHIGH (2 loci)
block963485 [novel_lenNOK_cloningHIGH_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.026 | no | no | 0.21/0.45 | 18/24/0.08 | 0.0 2.0 | 0.0 0.6 | 73 7 | 0 0 | 4 3 | 0 0 | 25 10 | 6 14 | 3arm 3arm | 30 30 | nd nd | 0.58 0.84 | 11 13 | 110 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -------------------------------------------ACAACAG------------------------------------ | 88 | novel | ||||
| seed | ---------------------------------------------------GAAAUAU---------------------------- | 6 | novel | ||||
| seed | ----------------------------------------------------------AAGCCUA--------------------- | 5 | novel | ||||
| seed | -------------------------------------UCAAAUA------------------------------------------ | 4 | novel | ||||
| seed | --------------------------------------CAAAUAC----------------------------------------- | 2 | novel | ||||
| seed | -----------------------------------------AUACAAC-------------------------------------- | 2 | novel | ||||
| seed | --------------------------------------------------------AUAAGCC----------------------- | 1 | novel | ||||
| seed | ---------------------------------------------AACAGUG---------------------------------- | 1 | novel | ||||
| seed | --------------------------------------------CAACAGU----------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S2 | T4S1 | T5S1 | |||
| ------------------------------------------TACAACAGTGAAATATAAG------------------------- | 19 | 2 | 9 | 1 | - | 73 | |
| --------------------------------------------------TGAAATATAAGCCTACTCCTAAGA------------ | 24 | - | - | - | - | 5 | |
| ------------------------------------GTCAAATACAACAGTGAAA------------------------------- | 19 | - | - | - | - | 4 | |
| ---------------------------------------------------------TAAGCCTACTCCTAAGATC---------- | 19 | 1 | - | - | - | 2 | |
| ----------------------------------------AATACAACAGTGAAATATA--------------------------- | 19 | - | - | - | - | 2 | |
| ------------------------------------------TACAACAGTGAAATATAA-------------------------- | 18 | 1 | - | - | - | 1 | |
| -------------------------------------TCAAATACAACAGTGAAAT------------------------------ | 19 | - | - | - | - | 2 | |
| -------------------------------------------ACAACAGTGAAATATAAGC------------------------ | 19 | - | - | - | - | 1 | |
| ------------------------------------------TACAACAGTGAAATATAAGCC----------------------- | 21 | - | - | - | - | 1 | |
| ---------------------------------------------------------TAAGCCTACTCCTAAGATCC--------- | 20 | - | - | - | 1 | - | |
| --------------------------------------------CAACAGTGAAATATAAGCCT---------------------- | 20 | - | - | - | - | 1 | |
| ---------------------------------------------------------TAAGCCTACTCCTAAGATCCA-------- | 21 | 1 | - | - | - | - | |
| --------------------------------------------------TGAAATATAAGCCTACTC------------------ | 18 | 1 | - | - | - | - | |
| -------------------------------------------------------TATAAGCCTACTCCTAAGA------------ | 19 | - | - | - | - | 1 | |
| rat | tacaacctgtcttctgaactgttgtatgacaatggcgtcaaaTACAACAGTGAAATATAAGcctactcctaagatccatacgttgt | ||||||
| ************************************************************************************** | |||||||
| ------------------------------------------------------------------------------------------------ | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | ||||||
| ------------------------------------------------------------------------------------------------ | ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted | ||||||
| rat | .(((((.(((..(((..(((((((((((((......))))..)))))))))....................)))...))).))))) | 0.400 -18.45 | |||||
| rat | chromosome:1:51819938:51820023:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_coding|ENSRNOT00000048246|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
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