other hairpins
novel_lenNOK_cloningHIGH_Multihit_nonpairedHIGH_bulgeHIGH (2 loci)
block421596 [novel_lenNOK_cloningHIGH_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.129 | no | no | 0.39/0.39 | 18/18/0.00 | 0.0 | 0.0 | 54 | 0 | 2 | 0 | 7 | 29 | 5arm | 13 | nd | 0.33 | 4 | 54 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------CCUUACA--------------------------------------------------------------- | 18 | novel | |
| seed | --------CCUUACA------------------------------------------------------------------------------------------------------- | 18 | novel | |
| seed | ----------------------------------------------------------------------------------------CCUUACA----------------------- | 18 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| -------GCCTTACATATTGTGGAT--------------------------------------------------------------------------------------------- | 18 | 13 | 5 | |
| ---------------------------------------------------------------------------------------GCCTTACATATTGTGGAT------------- | 18 | 13 | 5 | |
| -----------------------------------------------GCCTTACATATTGTGGAT----------------------------------------------------- | 18 | 13 | 5 | |
| rat | caggccaGCCTTACATATTGTGGATaaccgggcaactgcgcaggccgGCCTTACATATTGTGGATaaccgggcaactgcgcaggccgGCCTTACATATTGTGGATaacggggcaactg | |||
| ********************************************************************************************************************** | ||||
| -------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000012750 ENSRNOG00000009281 Commd1 | |||
| rat | (((....(((((.((((.((((.....((((....((((((((.((((..((((.....))))....))))....)))))))).)))).....)))).))))......)))))..))) | 0.620 -41.10 | ||
| rat | chromosome:14:103657011:103657128:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000056897|ENSRNOG00000009281 ## Opposite_strand|Intronic_coding|ENSRNOT00000012750|ENSRNOG00000009281 ## ENSRNOG00000009281|protein_coding|Commd1|COMM domain containing 1 Gene [Source:MGI (curated);Acc:Commd1-001] ## {Repeats: trf 581 599 0 class=trf} |
novel_lenNOK_cloningHIGH_multiarm_DicerNOK_5varHIGH_nonpairedHIGH_bulgeHIGH (2 loci)
block1060816 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.298 | no | no | 0.37/0.55 | 18/25/0.68 | 0.0 0.0 5.4 | 0.6 0.0 4.8 | 16 2 13 | 0 0 0 | 5 1 3 | 0 0 0 | 13 33 7 | 4 -13 1 | 5arm_loop_3arm 5arm_loop_3arm 3arm | 1 1 2 | nd nd nd | 0.55 0.53 0.53 | 7 4 7 | 53 | 6 | 0 | 10 |
| reads | miRBase family seed | |||||||
| seed | --------------GACAUCC----------------------------------------------------------- | 23 | novel | |||||
| seed | ---------------------------------------------AAGGAGA---------------------------- | 7 | novel | |||||
| seed | ------------------------------------------------------CAGACAU------------------- | 6 | novel | |||||
| seed | ----------------------------------------------AGGAGAA--------------------------- | 2 | novel | |||||
| seed | ----------------------------------GCCCUAC--------------------------------------- | 2 | novel | |||||
| seed | -------------UGACAUC------------------------------------------------------------ | 2 | novel | |||||
| seed | --------------------------------------------GAAGGAG----------------------------- | 1 | novel | |||||
| seed | ---------------------------------------ACAGAGA---------------------------------- | 1 | novel | |||||
| seed | -------------------------------------------------------AGACAUC------------------ | 1 | novel | |||||
| seed | ------------------------ACUAACU------------------------------------------------- | 1 | novel | |||||
| seed | -----------------AUCCCUG-------------------------------------------------------- | 1 | novel | |||||
| seed | -----------------------------------------------GGAGAAU-------------------------- | 1 | novel | |||||
| seed | -----------------------GACUAAC-------------------------------------------------- | 1 | novel | |||||
| seed | -------------------CCCUGAC------------------------------------------------------ | 1 | novel | |||||
| seed | -------------------------------------------------AGAAUCA------------------------ | 1 | novel | |||||
| seed | ---------------ACAUCCC---------------------------------------------------------- | 1 | novel | |||||
| seed | ----------------------------------------------------AUCAGAC--------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T2S2 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| -------------TGACATCCCTGACTAACTCCTG--------------------------------------------- | 22 | 3 | 1 | - | 1 | 8 | - | |
| -----------------------------------------------------TCAGACATCTATACGCCCTC------- | 20 | 1 | - | - | - | 5 | - | |
| --------------------------------------------GAAGGAGAATCAGACATCTATAC------------- | 23 | - | - | 1 | - | 4 | - | |
| -------------TGACATCCCTGACTAACTCC----------------------------------------------- | 20 | - | - | - | - | 5 | - | |
| -------------TGACATCCCTGACTAACTC------------------------------------------------ | 19 | - | 1 | - | - | 2 | - | |
| ---------------------------------------------AAGGAGAATCAGACATCTA---------------- | 19 | - | - | - | - | 2 | - | |
| ---------------------------------TGCCCTACAGAGAAGGAGA---------------------------- | 19 | - | - | - | - | 2 | - | |
| --------------------------------------------GAAGGAGAATCAGACATCT----------------- | 19 | - | - | - | - | 2 | - | |
| ----------------------------------------------AGGAGAATCAGACATCTAT--------------- | 19 | - | - | - | - | 1 | - | |
| ------------CTGACATCCCTGACTAACT------------------------------------------------- | 19 | - | - | - | - | 1 | - | |
| ------------CTGACATCCCTGACTAACTCCTG--------------------------------------------- | 23 | - | - | - | - | 1 | - | |
| -------------TGACATCCCTGACTAACTCCTGC-------------------------------------------- | 23 | - | - | - | - | 1 | - | |
| -----------------------GACTAACTCCTGCCCTACAG------------------------------------- | 20 | - | - | - | - | 1 | - | |
| -------------------------------------------AGAAGGAGAATCAGACATCTATAC------------- | 24 | - | - | - | - | 1 | - | |
| ---------------------------------------------------AATCAGACATCTATACGCC---------- | 19 | - | - | - | - | 1 | - | |
| -------------TGACATCCCTGACTAACT------------------------------------------------- | 18 | - | - | - | - | - | 1 | |
| ----------------------TGACTAACTCCTGCCCTACAGAG----------------------------------- | 23 | - | - | - | - | 1 | - | |
| ----------------CATCCCTGACTAACTCCT---------------------------------------------- | 18 | - | - | - | - | 1 | - | |
| ------------------TCCCTGACTAACTCCTGCCCTACA-------------------------------------- | 24 | - | - | - | - | 1 | - | |
| --------------GACATCCCTGACTAACTCCTG--------------------------------------------- | 21 | - | - | - | - | 1 | - | |
| ------------------------------------------------GAGAATCAGACATCTATAC------------- | 19 | - | - | - | - | 1 | - | |
| ------------------------------------------------------CAGACATCTATACGCCCTC------- | 19 | - | - | - | - | 1 | - | |
| --------------------------------------TACAGAGAAGGAGAATCAGACATCT----------------- | 25 | - | - | - | - | 1 | - | |
| rat | ggactagggggtcTGACATCCCTGACTAACTCCTGccctacagaGAAGGAGAATCAGACATCTATACGCCCTCgaggtta | |||||||
| ******************************************************************************** | ||||||||
| rat | .((((.((((((.........((((....(((((...((....)).)))))..))))..........))))))..)))). | 0.960 -20.31 | ||||||
| rat | chromosome:20:5518008:5518087:-1 | intergenic |
sblock8144 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.686 | no | no | 0.37/0.58 | 18/26/0.50 | 2.0 0.0 | 1.4 2.4 | 14 31 | 0 0 | 6 8 | 0 0 | 11 14 | 5 0 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.55 0.46 | 4 7 | 110 | 9 | -9 | -6 |
| reads | miRBase family seed | ||||||||||
| seed | ------------------------------------------------------UGGUUCC-------------------------------- | 53 | novel | ||||||||
| seed | ------------ACAGAGU-------------------------------------------------------------------------- | 12 | novel | ||||||||
| seed | -----------------------------------------------------------CCCUGAU--------------------------- | 7 | novel | ||||||||
| seed | -------------------AGAUCGA------------------------------------------------------------------- | 6 | novel | ||||||||
| seed | ----------------------------CCAGAUU---------------------------------------------------------- | 6 | novel | ||||||||
| seed | -----------------------CGAAUCC--------------------------------------------------------------- | 4 | novel | ||||||||
| seed | -------------CAGAGUA------------------------------------------------------------------------- | 3 | novel | ||||||||
| seed | ----------GGACAGA---------------------------------------------------------------------------- | 3 | novel | ||||||||
| seed | ----------------AGUAGAU---------------------------------------------------------------------- | 3 | novel | ||||||||
| seed | -------------------------------------------------------GGUUCCC------------------------------- | 2 | novel | ||||||||
| seed | ---------------------AUCGAAU----------------------------------------------------------------- | 2 | novel | ||||||||
| seed | ------------------------GAAUCCA-------------------------------------------------------------- | 2 | novel | ||||||||
| seed | -----------GACAGAG--------------------------------------------------------------------------- | 1 | novel | ||||||||
| seed | ----------------------------------------------CUUGCAU---------------------------------------- | 1 | novel | ||||||||
| seed | -----------------------------------ACGCCGC--------------------------------------------------- | 1 | novel | ||||||||
| seed | -----------------GUAGAUC--------------------------------------------------------------------- | 1 | novel | ||||||||
| seed | -------------------------------------------------GCAUGUG------------------------------------- | 1 | novel | ||||||||
| seed | ------------------------------------------------UGCAUGU-------------------------------------- | 1 | novel | ||||||||
| seed | ---------------------------------------------UCUUGCA----------------------------------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------------------------------GTGGTTCCCTGATGGTTAGTGTTCAC-------------- | 26 | - | 1 | - | - | - | 1 | - | 18 | - | |
| -----------GACAGAGTAGATCGAATCCAGA------------------------------------------------------------ | 22 | - | - | 1 | - | - | - | - | 7 | - | |
| -----------------------------------------------------GTGGTTCCCTGATGGTTAG--------------------- | 19 | - | - | 1 | - | - | - | - | 7 | - | |
| -----------------------------------------------------GTGGTTCCCTGATGGTTAGTGT------------------ | 22 | - | 1 | - | - | - | - | - | 6 | - | |
| -----------------------------------------------------GTGGTTCCCTGATGGTTAGT-------------------- | 20 | 1 | 2 | - | - | - | - | - | 3 | - | |
| ------------------TAGATCGAATCCAGATTAC-------------------------------------------------------- | 19 | 1 | - | - | - | - | - | - | 4 | - | |
| -----------------------------------------------------GTGGTTCCCTGATGGTTA---------------------- | 18 | 1 | 1 | 1 | - | - | - | - | 2 | - | |
| ----------------------------------------------------------TCCCTGATGGTTAGTGTTCACTC------------ | 23 | - | - | - | - | - | - | - | 4 | - | |
| -----------GACAGAGTAGATCGAATCCAGAT----------------------------------------------------------- | 23 | - | - | - | - | - | - | - | 3 | - | |
| ----------------------TCGAATCCAGATTACGCCGCTCT------------------------------------------------ | 23 | - | - | - | - | - | 1 | - | 2 | - | |
| --------------------GATCGAATCCAGATTACGCCGC--------------------------------------------------- | 22 | - | - | - | - | - | - | - | 2 | - | |
| ---------------GAGTAGATCGAATCCAGAT----------------------------------------------------------- | 19 | - | - | 1 | - | - | - | - | 1 | - | |
| ---------------------------TCCAGATTACGCCGCTCTTCT--------------------------------------------- | 21 | 1 | - | - | - | - | - | - | 1 | - | |
| ---------TGGACAGAGTAGATCGAATCCAGA------------------------------------------------------------ | 24 | - | - | - | 1 | - | - | - | 1 | - | |
| -----------------------------------------------------GTGGTTCCCTGATGGTTAGTGTTC---------------- | 24 | 1 | 1 | - | - | - | - | - | - | - | |
| ------------ACAGAGTAGATCGAATCCAGA------------------------------------------------------------ | 21 | - | - | - | - | - | - | - | 2 | - | |
| -----------------------------------------------------GTGGTTCCCTGATGGTTAGTG------------------- | 21 | - | - | - | - | - | - | - | 2 | - | |
| ------------------------------------------------------TGGTTCCCTGATGGTTAGTGTTCAC-------------- | 25 | - | - | - | - | - | - | - | 2 | - | |
| ---------------------------TCCAGATTACGCCGCTCTTCTTGCA----------------------------------------- | 25 | 1 | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------GTGGTTCCCTGATGGTTAGTGTTCA--------------- | 25 | - | - | - | - | - | - | - | 2 | - | |
| ---------------------------------------------TCTTGCATGTGGTTCCCTGA---------------------------- | 20 | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------TTCTTGCATGTGGTTCCCT------------------------------ | 19 | - | - | - | - | - | - | - | - | 1 | |
| ----------------------------------------------------------TCCCTGATGGTTAGTGTTCACTCCT---------- | 25 | - | - | - | - | - | - | 1 | - | - | |
| ----------GGACAGAGTAGATCGAATCCA-------------------------------------------------------------- | 21 | - | - | - | - | - | - | - | 1 | - | |
| ---------------GAGTAGATCGAATCCAGATTAC-------------------------------------------------------- | 22 | - | - | - | - | - | - | - | 1 | - | |
| ------------ACAGAGTAGATCGAATCCAGAT----------------------------------------------------------- | 22 | - | - | - | - | - | - | - | 1 | - | |
| -----------------------CGAATCCAGATTACGCCGC--------------------------------------------------- | 19 | - | - | - | - | - | - | - | 1 | - | |
| ----------------------------------TACGCCGCTCTTCTTGCAT---------------------------------------- | 19 | - | - | - | - | - | - | 1 | - | - | |
| -----------------------------------------------------GTGGTTCCCTGATGGTTAGTGTT----------------- | 23 | - | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------------TCCCTGATGGTTAGTGTTC---------------- | 19 | - | - | - | - | - | - | - | 1 | - | |
| ------------------TAGATCGAATCCAGATTACGCC----------------------------------------------------- | 22 | - | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------------TCCCTGATGGTTAGTGTTCAC-------------- | 21 | - | - | - | - | - | - | - | 1 | - | |
| ----------------------TCGAATCCAGATTACGCC----------------------------------------------------- | 18 | - | - | - | - | - | 1 | - | - | - | |
| ---------------------------TCCAGATTACGCCGCTCT------------------------------------------------ | 18 | - | - | - | - | - | 1 | - | - | - | |
| ---------TGGACAGAGTAGATCGAATCC--------------------------------------------------------------- | 21 | 1 | - | - | - | - | - | - | - | - | |
| ----------------AGTAGATCGAATCCAGATT---------------------------------------------------------- | 19 | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------TTGCATGTGGTTCCCTGATGGT------------------------ | 22 | - | - | - | - | 1 | - | - | - | - | |
| ---------------------------TCCAGATTACGCCGCTCTT----------------------------------------------- | 19 | - | - | - | - | - | - | - | 1 | - | |
| -----------GACAGAGTAGATCGAATCCA-------------------------------------------------------------- | 20 | - | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------------TGCATGTGGTTCCCTGATGGTT----------------------- | 22 | - | - | - | - | - | - | - | 1 | - | |
| -----------------------CGAATCCAGATTACGCCGCTC------------------------------------------------- | 21 | - | - | - | - | - | - | - | 1 | - | |
| rat | ttgtgtctctgGACAGAGTAGATCGAATCCAGAttacgccgctcttcttgcatGTGGTTCCCTGATGGTTAGTGTTCACtcctgggtcacgaa | ||||||||||
| ********************************************************************************************* | |||||||||||
| rat | (((((.(((.(((....((.((.((...(((......(((((...........))))).......)))....)).))))))).))).))))). | 0.410 -21.42 | |||||||||
| rat | chromosome:3:115227093:115227185:1 | intergenic |
novel_lenNOK_cloningHIGH_multiarm_DicerNOK_Multihit_randfoldOK (2 loci)
sblock9584 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_Multihit_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.58/0.68 | 18/22/0.59 | 0.0 0.0 | 1.6 0.0 | 34 1 | 0 0 | 7 1 | 0 0 | 23 24 | 4 6 | 5arm 3arm | 17 17 | nd nd | 0.18 0.16 | 2 2 | 71 | 7 | 0 | 2 |
| reads | miRBase family seed | ||||||||
| seed | --------------------------------------------------------------------------------GGGUCCU------------------- | 34 | novel | ||||||
| seed | ------------------------GGGUCCU--------------------------------------------------------------------------- | 34 | novel | ||||||
| seed | -------------------------------------------------------------------------------UGGGUCC-------------------- | 1 | novel | ||||||
| seed | ----------------------------------------------------------------AGGUCCC----------------------------------- | 1 | novel | ||||||
| seed | -----------------------UGGGUCC---------------------------------------------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | |||
| -------------------------------------------------------------------------------TGGGTCCTTCAGGGGTCAT-------- | 19 | - | - | - | 2 | 8 | - | - | |
| -----------------------TGGGTCCTTCAGGGGTCAT---------------------------------------------------------------- | 19 | - | - | - | 2 | 8 | - | - | |
| -------------------------------------------------------------------------------TGGGTCCTTCAGGGGTCATGCC----- | 22 | - | - | - | 4 | 5 | - | - | |
| -----------------------TGGGTCCTTCAGGGGTCATGCC------------------------------------------------------------- | 22 | - | - | - | 4 | 5 | - | - | |
| -------------------------------------------------------------------------------TGGGTCCTTCAGGGGTCATG------- | 20 | 2 | 1 | - | 2 | 2 | - | 1 | |
| -----------------------TGGGTCCTTCAGGGGTCATG--------------------------------------------------------------- | 20 | 2 | 1 | - | 2 | 2 | - | 1 | |
| -----------------------TGGGTCCTTCAGGGGTCA----------------------------------------------------------------- | 18 | - | - | - | 1 | 2 | 1 | - | |
| -------------------------------------------------------------------------------TGGGTCCTTCAGGGGTCA--------- | 18 | - | - | - | 1 | 2 | 1 | - | |
| -------------------------------------------------------------------------------TGGGTCCTTCAGGGGTCATGC------ | 21 | - | - | 1 | 1 | 1 | - | - | |
| -----------------------TGGGTCCTTCAGGGGTCATGC-------------------------------------------------------------- | 21 | - | - | 1 | 1 | 1 | - | - | |
| ----------------------CTGGGTCCTTCAGGGGTCATG--------------------------------------------------------------- | 21 | - | - | - | - | 1 | - | - | |
| ------------------------------------------------------------------------------CTGGGTCCTTCAGGGGTCATG------- | 21 | - | - | - | - | 1 | - | - | |
| ---------------------------------------------------------------TAGGTCCCTGTGGGCCTGG------------------------ | 19 | - | - | - | - | 1 | - | - | |
| rat | gcatggtaggtccctgtggggccTGGGTCCTTCAGGGGTCATGCCgggtaatgagaagcatggtaggtccctgtgggccTGGGTCCTTCAGGGGTCATGCCgggta | ||||||||
| ********************************************************************************************************** | |||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000023143 ENSRNOG00000017037 RGD1560468_predicted | ||||||||
| rat | ((.(((((((((((((.((((((..(((((..((((((((.(((((.((........)).))))))))))))).)))))..)))))).)))))))).))))).)). | 1.000 -61.10 | |||||||
| rat | chromosome:5:157735695:157735800:-1 | Same_strand|Intronic_coding|ENSRNOT00000023143|ENSRNOG00000017037 ## ENSRNOG00000017037|protein_coding|RGD1560468_predicted| ## {Repeats: trf 944 963 0 class=trf,trf 981 1004 0 class=trf,trf 925 948 0 class=trf} |
sblock9586 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_Multihit_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.58/0.68 | 18/22/0.59 | 0.0 0.0 | 1.6 0.0 | 34 1 | 0 0 | 7 1 | 0 0 | 23 23 | 4 6 | 5arm 3arm | 17 17 | nd nd | 0.18 0.16 | 2 2 | 71 | 7 | 0 | 2 |
| reads | miRBase family seed | ||||||||
| seed | --------------------------------------------------------------------------------GGGUCCU------------------ | 34 | novel | ||||||
| seed | ------------------------GGGUCCU-------------------------------------------------------------------------- | 34 | novel | ||||||
| seed | -----------------------UGGGUCC--------------------------------------------------------------------------- | 1 | novel | ||||||
| seed | -------------------------------------------------------------------------------UGGGUCC------------------- | 1 | novel | ||||||
| seed | ----------------------------------------------------------------AGGUCCC---------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | |||
| -------------------------------------------------------------------------------TGGGTCCTTCAGGGGTCAT------- | 19 | - | - | - | 2 | 8 | - | - | |
| -----------------------TGGGTCCTTCAGGGGTCAT--------------------------------------------------------------- | 19 | - | - | - | 2 | 8 | - | - | |
| -------------------------------------------------------------------------------TGGGTCCTTCAGGGGTCATGCC---- | 22 | - | - | - | 4 | 5 | - | - | |
| -----------------------TGGGTCCTTCAGGGGTCATGCC------------------------------------------------------------ | 22 | - | - | - | 4 | 5 | - | - | |
| -----------------------TGGGTCCTTCAGGGGTCATG-------------------------------------------------------------- | 20 | 2 | 1 | - | 2 | 2 | - | 1 | |
| -------------------------------------------------------------------------------TGGGTCCTTCAGGGGTCATG------ | 20 | 2 | 1 | - | 2 | 2 | - | 1 | |
| -----------------------TGGGTCCTTCAGGGGTCA---------------------------------------------------------------- | 18 | - | - | - | 1 | 2 | 1 | - | |
| -------------------------------------------------------------------------------TGGGTCCTTCAGGGGTCA-------- | 18 | - | - | - | 1 | 2 | 1 | - | |
| -----------------------TGGGTCCTTCAGGGGTCATGC------------------------------------------------------------- | 21 | - | - | 1 | 1 | 1 | - | - | |
| -------------------------------------------------------------------------------TGGGTCCTTCAGGGGTCATGC----- | 21 | - | - | 1 | 1 | 1 | - | - | |
| ------------------------------------------------------------------------------CTGGGTCCTTCAGGGGTCATG------ | 21 | - | - | - | - | 1 | - | - | |
| ----------------------CTGGGTCCTTCAGGGGTCATG-------------------------------------------------------------- | 21 | - | - | - | - | 1 | - | - | |
| ---------------------------------------------------------------TAGGTCCCTGTGGGCCTGG----------------------- | 19 | - | - | - | - | 1 | - | - | |
| rat | gcatggtaggtccctgtggggccTGGGTCCTTCAGGGGTCATGCCgggtaatgagaagcatggtaggtccctgtgggccTGGGTCCTTCAGGGGTCATGCCgggt | ||||||||
| ********************************************************************************************************* | |||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000023143 ENSRNOG00000017037 RGD1560468_predicted | ||||||||
| rat | ((.(((((((((((((.((((((..(((((..((((((((.(((((.((........)).))))))))))))).)))))..)))))).)))))))).))))).)) | 1.000 -60.40 | |||||||
| rat | chromosome:5:157736092:157736196:-1 | Same_strand|Intronic_coding|ENSRNOT00000023143|ENSRNOG00000017037 ## ENSRNOG00000017037|protein_coding|RGD1560468_predicted| ## {Repeats: trf 1321 1344 0 class=trf,trf 1377 1400 0 class=trf,trf 1340 1359 0 class=trf} |
novel_lenNOK_cloningHIGH_multiarm_DicerNOK_bulgeHIGH (2 loci)
sblock3394 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.215 | no | no | 0.28/0.52 | 18/26/0.17 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 79 1 1 1 | 0 0 0 0 | 9 1 1 1 | 0 0 0 0 | 13 23 33 13 | 12 8 -3 13 | 5arm 5arm 5arm_loop 3arm | 1 1 1 1 | nd nd nd nd | 0.23 0.35 0.33 0.32 | 4 4 4 6 | 183 | 9 | 1 | -4 |
| reads | miRBase family seed | ||||||||||
| seed | --------------UCAUUUA----------------------------------------------------------------------------------- | 169 | novel | ||||||||
| seed | ---------------CAUUUAC---------------------------------------------------------------------------------- | 5 | novel | ||||||||
| seed | ----------------AUUUACU--------------------------------------------------------------------------------- | 4 | novel | ||||||||
| seed | --------------------ACUUACU----------------------------------------------------------------------------- | 1 | novel | ||||||||
| seed | ----------------------------------------------------------------------GCAGAGA--------------------------- | 1 | novel | ||||||||
| seed | ----------------------------------CUGAGCC--------------------------------------------------------------- | 1 | novel | ||||||||
| seed | ---------------------CUUACUU---------------------------------------------------------------------------- | 1 | novel | ||||||||
| seed | ------------------------ACUUACU------------------------------------------------------------------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------------CTCATTTACTTACTTACTCGTCTGAG----------------------------------------------------------------- | 26 | 5 | 13 | - | 3 | 3 | 1 | 4 | 79 | - | |
| -------------CTCATTTACTTACTTACTC------------------------------------------------------------------------ | 19 | 6 | 2 | 3 | 2 | 2 | - | 2 | 16 | 2 | |
| -------------CTCATTTACTTACTTACTCGTCT-------------------------------------------------------------------- | 23 | - | - | - | - | - | - | - | 7 | - | |
| -------------CTCATTTACTTACTTACTCGTC--------------------------------------------------------------------- | 22 | - | 1 | 1 | - | - | - | - | 4 | - | |
| -------------CTCATTTACTTACTTACTCG----------------------------------------------------------------------- | 20 | - | - | - | - | - | - | - | 5 | - | |
| --------------TCATTTACTTACTTACTCGTCTGAG----------------------------------------------------------------- | 25 | - | - | - | - | - | - | - | 4 | - | |
| -------------CTCATTTACTTACTTACTCGT---------------------------------------------------------------------- | 21 | 1 | - | - | - | - | - | - | 3 | - | |
| ---------------CATTTACTTACTTACTCGTCTGAG----------------------------------------------------------------- | 24 | - | - | - | - | - | - | - | 4 | - | |
| -------------CTCATTTACTTACTTACTCGTCTG------------------------------------------------------------------- | 24 | - | - | - | - | - | 1 | - | 2 | - | |
| -------------CTCATTTACTTACTTACTCGTCTGA------------------------------------------------------------------ | 25 | - | - | - | - | 1 | - | - | - | - | |
| ---------------------------------TCTGAGCCTTGTCAGGGTTCT-------------------------------------------------- | 21 | - | 1 | - | - | - | - | - | - | - | |
| --------------------ACTTACTTACTCGTCTGA------------------------------------------------------------------ | 18 | - | - | - | - | - | - | - | 1 | - | |
| ---------------------------------------------------------------------TGCAGAGAGTTCTCAAGAGAGA------------- | 22 | - | - | - | - | - | - | - | 1 | - | |
| -----------------------TACTTACTCGTCTGAGCCTT------------------------------------------------------------- | 20 | - | - | - | - | - | - | - | 1 | - | |
| --------------TCATTTACTTACTTACTC------------------------------------------------------------------------ | 18 | - | - | - | - | - | - | - | 1 | - | |
| -------------------TACTTACTTACTCGTCTGA------------------------------------------------------------------ | 19 | - | - | - | - | - | - | - | 1 | - | |
| rat | aaagctctttgatCTCATTTACTTACTTACTCGTCTGAGccttgtcagggttctaaatccatgccatgttgcagagagttctcaagagagatggggacgtgctt | ||||||||||
| ******************************************************************************************************** | |||||||||||
| rat | .((((....((.((((((((.(((....((((.(((((((..((.((((((.....)))).)).)).))).))))))))......))))))))))).)).)))) | 0.910 -26.10 | |||||||||
| rat | chromosome:12:5606693:5606796:1 | intergenic |
sblock7198 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.216 | no | no | 0.38/0.58 | 18/26/0.36 | 3.0 0.5 1.0 0.0 0.0 0.0 | 0.5 0.5 1.0 2.0 0.0 0.0 | 4 33 5 2 17 4 | 0 0 0 0 0 0 | 3 6 2 2 6 2 | 0 0 0 0 0 0 | 0 25 33 64 23 13 | 41 21 11 -19 6 13 | 5arm 5arm 5arm 5arm_loop_3arm 3arm 3arm | 1 1 1 1 1 1 | nd nd nd nd nd nd | 0.59 0.50 0.42 0.22 0.32 0.45 | 11 8 6 4 3 6 | 99 | 8 | -14 | -16 |
| reads | miRBase family seed | |||||||||
| seed | --------------------------GUCCCAA-------------------------------------------------------------------------------------- | 29 | novel | |||||||
| seed | ------------------------------------------------------------------------------GUCCUCU---------------------------------- | 23 | novel | |||||||
| seed | ----------------------------CCCAAGG------------------------------------------------------------------------------------ | 12 | novel | |||||||
| seed | ------------------------------------------------------------------------AACUCUG---------------------------------------- | 6 | novel | |||||||
| seed | -------------------------------------------------------------------------------------CCUAUGG--------------------------- | 6 | novel | |||||||
| seed | -----GUCACAU----------------------------------------------------------------------------------------------------------- | 3 | novel | |||||||
| seed | -------------------AAGUUCU--------------------------------------------------------------------------------------------- | 3 | miR-148b | |||||||
| seed | ------------GUGUUGG---------------------------------------------------------------------------------------------------- | 2 | novel | |||||||
| seed | -----------------------------------------------------------------UCCCGAG----------------------------------------------- | 2 | novel | |||||||
| seed | -------------------------------------------------------------------------ACUCUGU--------------------------------------- | 2 | novel | |||||||
| seed | ------------------------------------CCCAAGU---------------------------------------------------------------------------- | 2 | novel | |||||||
| seed | ----------------------------------------------------------------------------CUGUCCU------------------------------------ | 2 | novel | |||||||
| seed | -------------------------------------CCAAGUG--------------------------------------------------------------------------- | 2 | novel | |||||||
| seed | ----------------------------------------------------------------------------------------AUGGAUU------------------------ | 1 | novel | |||||||
| seed | -----------------GGAAGUU----------------------------------------------------------------------------------------------- | 1 | novel | |||||||
| seed | ------------------------------------------------------------------------------------------GGAUUUA---------------------- | 1 | novel | |||||||
| seed | -CAAUGUC--------------------------------------------------------------------------------------------------------------- | 1 | novel | |||||||
| seed | ----------------------------------GACCCAA------------------------------------------------------------------------------ | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------------------------------------------------------TGTCCTCTCCTATGGATTT----------------------- | 19 | 1 | 1 | 2 | - | - | 1 | 17 | 1 | |
| -------------------------TGTCCCAAGGACCCAAGTGT-------------------------------------------------------------------------- | 20 | 2 | - | - | - | - | - | 18 | - | |
| ---------------------------TCCCAAGGACCCAAGTGTT------------------------------------------------------------------------- | 19 | 1 | 1 | - | - | 1 | - | 8 | - | |
| -------------------------TGTCCCAAGGACCCAAGTG--------------------------------------------------------------------------- | 19 | - | - | - | 1 | - | - | 7 | 1 | |
| -----------------------------------------------------------------------GAACTCTGTCCTCTCCTAT----------------------------- | 19 | - | - | - | - | - | - | 5 | 1 | |
| ------------------------------------------------------------------------------------TCCTATGGATTTATCCCCTGGT------------- | 22 | - | - | - | - | - | - | 4 | - | |
| ------------------------------------------------------------------------AACTCTGTCCTCTCCTATGGATTT----------------------- | 24 | - | - | - | - | - | - | 2 | - | |
| ---------------------------------------------------------------------------TCTGTCCTCTCCTATGGAT------------------------- | 19 | - | - | - | - | - | - | 2 | - | |
| ------------------------------------CCCAAGTGTTTAGAGGTGG---------------------------------------------------------------- | 19 | - | - | - | - | - | - | 2 | - | |
| ----TGTCACATGTGTTGGAAGTTC---------------------------------------------------------------------------------------------- | 21 | 1 | 1 | - | - | - | - | - | - | |
| -----------------------------------ACCCAAGTGTTTAGAGGTGGG--------------------------------------------------------------- | 21 | - | - | - | - | - | - | 1 | - | |
| ----------------TGGAAGTTCTGTCCCAAGGACCC-------------------------------------------------------------------------------- | 23 | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------------------------------------TCCTATGGATTTATCCCCTGG-------------- | 21 | - | - | - | - | - | - | 1 | - | |
| ------------------GAAGTTCTGTCCCAAGGACCCAA------------------------------------------------------------------------------ | 23 | - | - | - | - | - | - | 1 | - | |
| ---------------------------------GGACCCAAGTGTTTAGAGG------------------------------------------------------------------- | 19 | 1 | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------TTCCCGAGAACTCTGTCCTCTC--------------------------------- | 22 | - | - | - | - | - | - | 1 | - | |
| ----TGTCACATGTGTTGGAAGTTCT--------------------------------------------------------------------------------------------- | 22 | - | 1 | - | - | - | - | - | - | |
| -----------TGTGTTGGAAGTTCTGTCCCAA-------------------------------------------------------------------------------------- | 22 | 1 | - | - | - | - | - | - | - | |
| ------------------GAAGTTCTGTCCCAAGGACCCAAGT---------------------------------------------------------------------------- | 25 | - | - | - | - | - | - | 1 | - | |
| ---------------------------------------------------------------------------------------TATGGATTTATCCCCTGGT------------- | 19 | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------------------------------------TCCTATGGATTTATCCCCTG--------------- | 20 | - | - | - | - | - | - | 1 | - | |
| ------------------GAAGTTCTGTCCCAAGGAC---------------------------------------------------------------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------------------TTCCCGAGAACTCTGTCC------------------------------------- | 18 | - | - | - | - | - | 1 | - | - | |
| -----------------------------------ACCCAAGTGTTTAGAGGTG----------------------------------------------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| -----------TGTGTTGGAAGTTCTGTCC----------------------------------------------------------------------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------------------------------------------TGGATTTATCCCCTGGTG------------ | 18 | - | - | 1 | - | - | - | - | - | |
| ---------------------------TCCCAAGGACCCAAGTGT-------------------------------------------------------------------------- | 18 | - | - | - | - | - | - | 1 | - | |
| TCAATGTCACATGTGTTGGAAGTTCT--------------------------------------------------------------------------------------------- | 26 | - | - | - | - | - | - | 1 | - | |
| rat | tcaatgtcacatgtgttggaagttcTGTCCCAAGGACCCAAGTGTTtagaggtggggcagctggttcccgagaactcTGTCCTCTCCTATGGATTTatcccctggtggacggactccca | |||||||||
| *********************************************************************************************************************** | ||||||||||
| rat | ................(((.((.(((((((..(((........(((((.(((.(((((((..(((((....))))))))))))..))).)))))......)))...))))))))).))) | 0.620 -37.04 | ||||||||
| rat | chromosome:20:5555655:5555773:1 | intergenic |
novel_lenNOK_cloningHIGH_multiarm_DicerOK_shortStem_randfoldOK (2 loci)
sblock644 [novel_lenNOK_cloningHIGH_multiarm_DicerOK_shortStem_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.43/0.53 | 18/23/0.51 | 0.0 3.0 0.0 | 1.3 0.7 1.0 | 58 3 638 | 0 0 0 | 2 1 5 | 0 0 0 | 5 12 3 | 6 -5 7 | 5arm 3arm 3arm | 7 8 9 | nd nd nd | 0.17 0.05 0.09 | 2 1 1 | 890 | 5 | 1 | 2 |
| reads | miRBase family seed | ||||||
| seed | -----------------------------------------------GUAUAAC----------------- | 777 | novel | ||||
| seed | ------GUCAGGC---------------------------------------------------------- | 79 | novel | ||||
| seed | --------------------------------------------------UAACCAA-------------- | 12 | novel | ||||
| seed | --------CAGGCUG-------------------------------------------------------- | 12 | novel | ||||
| seed | ------------------------------------------------UAUAACC---------------- | 4 | novel | ||||
| seed | ----------GGCUGCU------------------------------------------------------ | 1 | novel | ||||
| seed | ---------------------------------------------GGGUAUA------------------- | 1 | novel | ||||
| seed | -------------------------------------------------AUAACCA--------------- | 1 | novel | ||||
| seed | ----------------------------------------GUCCUGG------------------------ | 1 | novel | ||||
| seed | -----------------------------------CUCUGGU----------------------------- | 1 | novel | ||||
| seed | ---------------------------------------GGUCCUG------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S2 | T4S2 | T5S2 | |||
| ----------------------------------------------GGTATAACCAAAGCCCGAC------ | 19 | 193 | 131 | 1 | - | 1 | |
| ----------------------------------------------GGTATAACCAAAGCCCGACT----- | 20 | 131 | 42 | - | - | - | |
| ----------------------------------------------GGTATAACCAAAGCCCGACTGT--- | 22 | 27 | 124 | - | 1 | - | |
| ----------------------------------------------GGTATAACCAAAGCCCGACTG---- | 21 | 59 | 27 | - | - | - | |
| ----------------------------------------------GGTATAACCAAAGCCCGA------- | 18 | 17 | 19 | - | - | - | |
| -----AGTCAGGCTGCTGGTTATA----------------------------------------------- | 19 | 17 | 15 | - | - | - | |
| -----AGTCAGGCTGCTGGTTAT------------------------------------------------ | 18 | 17 | 3 | - | - | - | |
| -----AGTCAGGCTGCTGGTTATATTCC------------------------------------------- | 23 | 9 | 5 | - | - | - | |
| -------------------------------------------------ATAACCAAAGCCCGACTGT--- | 19 | 1 | 8 | - | - | - | |
| -----AGTCAGGCTGCTGGTTATAT---------------------------------------------- | 20 | 4 | 2 | - | - | - | |
| -----AGTCAGGCTGCTGGTTATATTC-------------------------------------------- | 22 | 3 | 3 | - | - | - | |
| -------TCAGGCTGCTGGTTATATTC-------------------------------------------- | 20 | 2 | 2 | - | - | - | |
| -------TCAGGCTGCTGGTTATATTCC------------------------------------------- | 21 | 2 | 2 | - | - | - | |
| -------TCAGGCTGCTGGTTATAT---------------------------------------------- | 18 | 3 | 1 | - | - | - | |
| ----------------------------------------------GGTATAACCAAAGCCCGACTGTT-- | 23 | - | 4 | - | - | - | |
| -----------------------------------------------GTATAACCAAAGCCCGAC------ | 18 | 2 | 1 | - | - | - | |
| -------------------------------------------------ATAACCAAAGCCCGACTG---- | 18 | 2 | 1 | - | - | - | |
| -----------------------------------------------GTATAACCAAAGCCCGACTGT--- | 21 | - | 1 | - | - | - | |
| ---------------------------------------GGTCCTGGGTATAACCAAAG------------ | 20 | - | 1 | - | - | - | |
| -----AGTCAGGCTGCTGGTTATATT--------------------------------------------- | 21 | - | 1 | - | - | - | |
| ------------------------------------------------TATAACCAAAGCCCGACTGT--- | 20 | - | 1 | - | - | - | |
| --------------------------------------TGGTCCTGGGTATAACCAA-------------- | 19 | - | 1 | - | - | - | |
| ----------------------------------TCTCTGGTCCTGGGTATAACCAA-------------- | 23 | - | 1 | - | - | - | |
| --------------------------------------------TGGGTATAACCAAAGCCCGAC------ | 21 | - | 1 | - | - | - | |
| ---------AGGCTGCTGGTTATATTCC------------------------------------------- | 19 | 1 | - | - | - | - | |
| rat | tgatcagtcaggctgctggttatattccaggacttctctggtcctgGGTATAACCAAAGCCCGACTGTtaa | ||||||
| *********************************************************************** | |||||||
| rat | (((.(((((.((((..((((((((.(((((((((.....))))))))))))))))).)))).)))))))). | 1.000 -40.10 | |||||
| rat | chromosome:1:115312094:115312164:-1 | intergenic |
sblock648 [novel_lenNOK_cloningHIGH_multiarm_DicerOK_shortStem_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.43/0.53 | 18/23/0.51 | 0.0 0.5 0.0 | 1.3 1.0 1.0 | 58 2 638 | 0 0 0 | 2 1 5 | 0 0 0 | 5 12 3 | 6 -1 7 | 5arm 3arm 3arm | 7 8 9 | nd nd nd | 0.17 0.05 0.09 | 2 1 1 | 889 | 5 | 1 | 2 |
| reads | miRBase family seed | ||||||
| seed | -----------------------------------------------GUAUAAC----------------- | 777 | novel | ||||
| seed | ------GUCAGGC---------------------------------------------------------- | 79 | novel | ||||
| seed | --------------------------------------------------UAACCAA-------------- | 12 | novel | ||||
| seed | --------CAGGCUG-------------------------------------------------------- | 12 | novel | ||||
| seed | ------------------------------------------------UAUAACC---------------- | 4 | novel | ||||
| seed | ----------GGCUGCU------------------------------------------------------ | 1 | novel | ||||
| seed | ---------------------------------------------GGGUAUA------------------- | 1 | novel | ||||
| seed | -------------------------------------------------AUAACCA--------------- | 1 | novel | ||||
| seed | ----------------------------------------GUCCUGG------------------------ | 1 | novel | ||||
| seed | ---------------------------------------GGUCCUG------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S2 | T4S2 | T5S2 | |||
| ----------------------------------------------GGTATAACCAAAGCCCGAC------ | 19 | 193 | 131 | 1 | - | 1 | |
| ----------------------------------------------GGTATAACCAAAGCCCGACT----- | 20 | 131 | 42 | - | - | - | |
| ----------------------------------------------GGTATAACCAAAGCCCGACTGT--- | 22 | 27 | 124 | - | 1 | - | |
| ----------------------------------------------GGTATAACCAAAGCCCGACTG---- | 21 | 59 | 27 | - | - | - | |
| ----------------------------------------------GGTATAACCAAAGCCCGA------- | 18 | 17 | 19 | - | - | - | |
| -----AGTCAGGCTGCTGGTTATA----------------------------------------------- | 19 | 17 | 15 | - | - | - | |
| -----AGTCAGGCTGCTGGTTAT------------------------------------------------ | 18 | 17 | 3 | - | - | - | |
| -----AGTCAGGCTGCTGGTTATATTCC------------------------------------------- | 23 | 9 | 5 | - | - | - | |
| -------------------------------------------------ATAACCAAAGCCCGACTGT--- | 19 | 1 | 8 | - | - | - | |
| -----AGTCAGGCTGCTGGTTATAT---------------------------------------------- | 20 | 4 | 2 | - | - | - | |
| -----AGTCAGGCTGCTGGTTATATTC-------------------------------------------- | 22 | 3 | 3 | - | - | - | |
| -------TCAGGCTGCTGGTTATATTC-------------------------------------------- | 20 | 2 | 2 | - | - | - | |
| -------TCAGGCTGCTGGTTATATTCC------------------------------------------- | 21 | 2 | 2 | - | - | - | |
| -------TCAGGCTGCTGGTTATAT---------------------------------------------- | 18 | 3 | 1 | - | - | - | |
| ----------------------------------------------GGTATAACCAAAGCCCGACTGTT-- | 23 | - | 4 | - | - | - | |
| -----------------------------------------------GTATAACCAAAGCCCGAC------ | 18 | 2 | 1 | - | - | - | |
| -------------------------------------------------ATAACCAAAGCCCGACTG---- | 18 | 2 | 1 | - | - | - | |
| -----------------------------------------------GTATAACCAAAGCCCGACTGT--- | 21 | - | 1 | - | - | - | |
| ---------------------------------------GGTCCTGGGTATAACCAAAG------------ | 20 | - | 1 | - | - | - | |
| -----AGTCAGGCTGCTGGTTATATT--------------------------------------------- | 21 | - | 1 | - | - | - | |
| ------------------------------------------------TATAACCAAAGCCCGACTGT--- | 20 | - | 1 | - | - | - | |
| --------------------------------------TGGTCCTGGGTATAACCAA-------------- | 19 | - | 1 | - | - | - | |
| --------------------------------------------TGGGTATAACCAAAGCCCGAC------ | 21 | - | 1 | - | - | - | |
| ---------AGGCTGCTGGTTATATTCC------------------------------------------- | 19 | 1 | - | - | - | - | |
| rat | tgatcagtcaggctgctggttatattccaggacttatctggtcctgGGTATAACCAAAGCCCGACTGTtaa | ||||||
| *********************************************************************** | |||||||
| rat | (((.(((((.((((..((((((((.(((((((((.....))))))))))))))))).)))).)))))))). | 1.000 -40.10 | |||||
| rat | chromosome:1:115337908:115337978:-1 | intergenic |
novel_lenNOK_cloningHIGH_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH (2 loci)
block1848509 [novel_lenNOK_cloningHIGH_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.753 | no | no | 0.32/0.47 | 18/25/0.33 | 3.3 | 3.9 | 82 | 0 | 4 | 0 | 2 | 9 | 5arm | 1 | nd | 0.45 | 4 | 104 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -----------GCAAUGA-------------------------------------------------------------------------------- | 48 | novel | |||
| seed | ---GAGCAGG---------------------------------------------------------------------------------------- | 30 | novel | |||
| seed | ----------------GAAAGAU--------------------------------------------------------------------------- | 16 | novel | |||
| seed | ------------CAAUGAA------------------------------------------------------------------------------- | 5 | novel | |||
| seed | -----GCAGGUG-------------------------------------------------------------------------------------- | 2 | novel | |||
| seed | ----AGCAGGU--------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | -------------------AGAUCCU------------------------------------------------------------------------ | 1 | novel | |||
| seed | -------------AAUGAAA------------------------------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S2 | T5S1 | |||
| ----------TGCAATGAAAGATCCTAGA--------------------------------------------------------------------- | 19 | 1 | 1 | - | 33 | |
| --TGAGCAGGTGCAATGAAAGA---------------------------------------------------------------------------- | 20 | - | - | 1 | 27 | |
| ----------TGCAATGAAAGATCCTAG---------------------------------------------------------------------- | 18 | - | - | - | 11 | |
| ---------------TGAAAGATCCTAGAAATGGGTGTGT---------------------------------------------------------- | 25 | - | - | - | 11 | |
| -----------GCAATGAAAGATCCTAGAA-------------------------------------------------------------------- | 19 | - | - | - | 5 | |
| --TGAGCAGGTGCAATGAAAG----------------------------------------------------------------------------- | 19 | - | - | - | 2 | |
| ------------CAATGAAAGATCCTAGAAA------------------------------------------------------------------- | 19 | - | - | - | 1 | |
| ------------------AAGATCCTAGAAATGGGTG------------------------------------------------------------- | 19 | - | - | - | 1 | |
| ---GAGCAGGTGCAATGAAAGA---------------------------------------------------------------------------- | 19 | - | - | - | 1 | |
| ----------TGCAATGAAAGATCCTAGAAAT------------------------------------------------------------------ | 22 | 1 | - | - | - | |
| ---------------TGAAAGATCCTAGAAATG----------------------------------------------------------------- | 18 | - | 1 | - | - | |
| ---------------TGAAAGATCCTAGAAATGG---------------------------------------------------------------- | 19 | - | - | - | 1 | |
| ----AGCAGGTGCAATGAAAGATCCTAGA--------------------------------------------------------------------- | 25 | - | - | - | 1 | |
| ---------------TGAAAGATCCTAGAAATGGGTGT------------------------------------------------------------ | 23 | - | - | - | 1 | |
| ----------TGCAATGAAAGATCCTAGAAA------------------------------------------------------------------- | 21 | - | - | - | 1 | |
| ----AGCAGGTGCAATGAAAGATC-------------------------------------------------------------------------- | 20 | - | - | - | 1 | |
| ---------------TGAAAGATCCTAGAAATGGGTGTG----------------------------------------------------------- | 24 | - | - | - | 1 | |
| ---------------TGAAAGATCCTAGAAATGGG--------------------------------------------------------------- | 20 | - | - | - | 1 | |
| rat | tcTGAGCAGGTGCAATGAAAGATCCTAGAAATGGGTGTGTgtggaaggccgggaagcctcagtccccatccccgtcgggtggcagtgggcaggccagg | |||||
| ************************************************************************************************** | ||||||
| rat | .(((.((..((.((.((....((((.....(((((..((...(((((((......))))...))).))..))))).))))..)).)).))..))))). | 0.710 -29.30 | ||||
| rat | chromosome:5:79246526:79246623:1 | intergenic |
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