other hairpins
novel_lenNOK_cloningHIGH_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH (2 loci)
block770109 [novel_lenNOK_cloningHIGH_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.076 | no | no | 0.37/0.56 | 18/26/0.50 | 2.2 | 2.0 | 51 | 0 | 6 | 0 | 1 | 1 | 3arm | 1 | nd | 0.36 | 4 | 74 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | ----------------------------------------------------CCACUCU---------------------------- | 45 | novel | |||||
| seed | ---------------------------------------------------------CUGAAUC----------------------- | 10 | novel | |||||
| seed | -------------------------------------------------------------------GAAUCAG------------- | 9 | novel | |||||
| seed | --------------------------------------------------AUCCACU------------------------------ | 9 | novel | |||||
| seed | ------------------------------------------------------------AAUCACU-------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T2S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ---------------------------------------------------TCCACTCTGAATCACTGAATCAGT------------ | 24 | 6 | 1 | 1 | 1 | 16 | 1 | |
| ---------------------------------------------------TCCACTCTGAATCACTGAATCAGTG----------- | 25 | 1 | 1 | - | - | 13 | - | |
| -------------------------------------------------CATCCACTCTGAATCACTGAATCAGT------------ | 26 | - | - | 1 | - | 6 | - | |
| --------------------------------------------------------TCTGAATCACTGAATCAGTGTCCCAC----- | 26 | 2 | - | - | - | 5 | - | |
| ------------------------------------------------------------------TGAATCAGTGTCCCACGGAG- | 20 | - | 1 | - | - | 5 | - | |
| ---------------------------------------------------TCCACTCTGAATCACTGAA----------------- | 19 | 1 | - | - | - | 1 | - | |
| ------------------------------------------------------------------TGAATCAGTGTCCCACGGA-- | 19 | - | - | - | - | 2 | - | |
| --------------------------------------------------------TCTGAATCACTGAATCAGT------------ | 19 | - | - | - | - | 1 | - | |
| ---------------------------------------------------TCCACTCTGAATCACTGAATC--------------- | 21 | - | - | - | - | 1 | - | |
| --------------------------------------------------------TCTGAATCACTGAATCAGTGTCC-------- | 23 | - | - | 1 | - | - | - | |
| --------------------------------------------------------TCTGAATCACTGAATCAG------------- | 18 | - | - | - | - | 1 | - | |
| -----------------------------------------------------------GAATCACTGAATCAGTGTCCCAC----- | 23 | - | - | - | - | 1 | - | |
| ---------------------------------------------------TCCACTCTGAATCACTGAATCAG------------- | 23 | - | - | - | - | 1 | - | |
| ------------------------------------------------------------------TGAATCAGTGTCCCACGG--- | 18 | - | - | - | - | 1 | - | |
| -------------------------------------------------CATCCACTCTGAATCACTGAATCAG------------- | 25 | - | - | - | - | 1 | - | |
| -------------------------------------------------CATCCACTCTGAATCACTGA------------------ | 20 | - | - | - | - | 1 | - | |
| rat | ctctgttaaagaaaagaggcagtggagaataagagaatggagaggttgcCATCCACTCTGAATCACTGAATCAGTGTCCCACGGAGc | |||||||
| *************************************************************************************** | ||||||||
| rat | ((((((....((...((..((((((......((((..((((..((...)).))))))))...))))))..))....))..)))))). | 0.920 -22.60 | ||||||
| rat | chromosome:19:15930572:15930658:-1 | intergenic |
novel_lenNOK_cloningHIGH_shortStem_loopOverlap (2 loci)
block323458 [novel_lenNOK_cloningHIGH_shortStem_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.029 | no | no | 0.50/0.63 | 18/25/0.69 | 0.0 | 1.1 | 54 | 0 | 2 | 0 | 4 | -4 | 5arm_loop | 1 | nd | 0.16 | 1 | 64 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----UCACCUG----------------------------------------------- | 60 | novel | |
| seed | ------CACCUGG---------------------------------------------- | 4 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| ----GTCACCTGGCATGTGCCTCT----------------------------------- | 20 | 10 | 7 | |
| ----GTCACCTGGCATGTGCCTC------------------------------------ | 19 | 8 | 7 | |
| ----GTCACCTGGCATGTGCCTCTTT--------------------------------- | 22 | 7 | 6 | |
| ----GTCACCTGGCATGTGCCTCTTTT-------------------------------- | 23 | 5 | 2 | |
| ----GTCACCTGGCATGTGCCTCTT---------------------------------- | 21 | 1 | 4 | |
| ----GTCACCTGGCATGTGCCT------------------------------------- | 18 | 2 | - | |
| -----TCACCTGGCATGTGCCTC------------------------------------ | 18 | - | 1 | |
| -----TCACCTGGCATGTGCCTCTTTT-------------------------------- | 22 | - | 1 | |
| ----GTCACCTGGCATGTGCCTCTTTTGT------------------------------ | 25 | - | 1 | |
| -----TCACCTGGCATGTGCCTCT----------------------------------- | 19 | - | 1 | |
| -----TCACCTGGCATGTGCCTCTT---------------------------------- | 20 | 1 | - | |
| rat | gatgGTCACCTGGCATGTGCCTCTTTTgttttgaatgctgtcatgctaggttggtaatt | |||
| *********************************************************** | ||||
| rat | (((..((((((((((((.((.((.........))..))...)))))))))).))..))) | 1.000 -17.10 | ||
| rat | chromosome:13:89592346:89592404:1 | intergenic |
block1946322 [novel_lenNOK_cloningHIGH_shortStem_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.114 | no | no | 0.26/0.33 | 18/20/0.01 | 0.0 | 0.0 | 80 | 0 | 9 | 0 | 4 | -2 | 3arm_loop | 2 | nd | 0.28 | 3 | 115 | 9 | na | na |
| reads | miRBase family seed | ||||||||||
| seed | -------------------------UGAAAUG-------------- | 114 | miR-203 | ||||||||
| seed | ------------------------CUGAAAU--------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------------------CTGAAATGAAGAGAAAAA---- | 18 | 1 | 13 | 2 | 21 | 4 | 1 | 4 | 1 | 59 | |
| ------------------------CTGAAATGAAGAGAAAAAT--- | 19 | - | - | - | - | - | - | 3 | - | 4 | |
| -----------------------CCTGAAATGAAGAGAAAA----- | 18 | - | - | - | - | - | - | - | - | 1 | |
| ------------------------CTGAAATGAAGAGAAAAATG-- | 20 | - | - | - | - | - | - | - | - | 1 | |
| rat | ccattgctctggtatctattcttcCTGAAATGAAGAGAAAAAtggg | ||||||||||
| ********************************************** | |||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000034342 ENSRNOG00000008931 Slc25a21 | ||||||||||
| rat | (((((.((((..(((...(((.....)))))).))))...))))). | 0.990 -9.80 | |||||||||
| rat | chromosome:6:77264905:77264950:-1 | Same_strand|Intronic_coding|ENSRNOT00000034342|ENSRNOG00000008931 ## ENSRNOG00000008931|protein_coding|Slc25a21|solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21 Gene [Source:MGI Symbol;Acc:MGI:2445059] |
novel_lenNOK_cloningHIGH_shortStem_loopOverlap_randfoldOK_nonpairedHIGH (2 loci)
block2296397 [novel_lenNOK_cloningHIGH_shortStem_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.22/0.33 | 18/21/0.55 | 0.0 | 0.4 | 50 | 0 | 2 | 0 | 2 | -1 | 5arm_loop | 4 | nd | 0.37 | 3 | 58 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---UUCCUAG---------------------------------------- | 53 | miR-384 | |
| seed | ----UCCUAGA--------------------------------------- | 4 | novel | |
| seed | -GAUUCCU------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| --ATTCCTAGAAATTGTTTACA---------------------------- | 20 | 13 | 17 | |
| --ATTCCTAGAAATTGTTTAC----------------------------- | 19 | 9 | 11 | |
| ---TTCCTAGAAATTGTTTACA---------------------------- | 19 | 1 | 2 | |
| --ATTCCTAGAAATTGTTTACAG--------------------------- | 21 | 1 | 1 | |
| ---TTCCTAGAAATTGTTTAC----------------------------- | 18 | 1 | - | |
| --ATTCCTAGAAATTGTTTA------------------------------ | 18 | 1 | - | |
| GGATTCCTAGAAATTGTT-------------------------------- | 18 | - | 1 | |
| rat | ggATTCCTAGAAATTGTTTACAgtattgtctgcactgtttaggttgtcca | |||
| ************************************************** | ||||
| ------------------------------------------------------------ | ENSRNOT00000042860 ENSRNOG00000028823 UP1_RAT | |||
| rat | ((((.((((((...(((..((......))..)))...))))))..)))). | 1.000 -14.70 | ||
| rat | chromosome:8:36682704:36682753:-1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000042860|ENSRNOG00000028823 ## ENSRNOG00000028823|protein_coding|UP1_RAT|Urinary protein 1 precursor (RUP-1) (Liver regeneration-related protein LRRG05). [Source:UniProtKB/Swiss-Prot;Acc:P81827] |
block2296834 [novel_lenNOK_cloningHIGH_shortStem_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.22/0.33 | 18/21/0.55 | 0.0 | 0.4 | 50 | 0 | 2 | 0 | 2 | -1 | 5arm_loop | 4 | nd | 0.37 | 3 | 58 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---UUCCUAG---------------------------------------- | 53 | miR-384 | |
| seed | ----UCCUAGA--------------------------------------- | 4 | novel | |
| seed | -GAUUCCU------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| --ATTCCTAGAAATTGTTTACA---------------------------- | 20 | 13 | 17 | |
| --ATTCCTAGAAATTGTTTAC----------------------------- | 19 | 9 | 11 | |
| ---TTCCTAGAAATTGTTTACA---------------------------- | 19 | 1 | 2 | |
| --ATTCCTAGAAATTGTTTACAG--------------------------- | 21 | 1 | 1 | |
| ---TTCCTAGAAATTGTTTAC----------------------------- | 18 | 1 | - | |
| --ATTCCTAGAAATTGTTTA------------------------------ | 18 | 1 | - | |
| GGATTCCTAGAAATTGTT-------------------------------- | 18 | - | 1 | |
| rat | ggATTCCTAGAAATTGTTTACAgtattgtctgcactgtttaggttgtcca | |||
| ************************************************** | ||||
| ------------------------------------------------------------ | ENSRNOT00000007930 ENSRNOG00000006042 Rup2 | |||
| rat | ((((.((((((...(((..((......))..)))...))))))..)))). | 1.000 -14.70 | ||
| rat | chromosome:8:37241803:37241852:-1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000007930|ENSRNOG00000006042 ## ENSRNOG00000006042|protein_coding|Rup2|urinary protein 2 [Source:RefSeq_peptide;Acc:NP_001030122] |
novel_lenNOK_cloningHIGH_shortStem_randfoldOK_bulgeHIGH (2 loci)
block350084 [novel_lenNOK_cloningHIGH_shortStem_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.56/0.56 | 18/18/0.00 | 0.0 | 0.0 | 34 | 0 | 7 | 0 | 2 | 14 | 3arm | 2 | nd | 0.28 | 4 | 64 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | -------------------------------------------------GGGACUC------------ | 64 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------------------------------------------AGGGACTCTGGGAAATGG-- | 18 | 34 | 9 | 2 | 1 | 8 | 4 | 6 | |
| rat | gccttttcttttcctgttagcctttgaggagccatccttatgtggatcAGGGACTCTGGGAAATGGtt | ||||||||
| ******************************************************************** | |||||||||
| rat | (((.((((((((((((....((..((((((....))))))...))..))))))....)))))).))). | 1.000 -22.90 | |||||||
| rat | chromosome:14:42765289:42765356:-1 | intergenic |
block611919 [novel_lenNOK_cloningHIGH_shortStem_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.56/0.61 | 18/19/0.00 | 0.0 | 0.0 | 60 | 0 | 10 | 0 | 2 | 40 | 3arm | 1 | nd | 0.22 | 4 | 74 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | -----------------------------------------------------------------------------------------------GGUUCAG------------ | 70 | novel | |||||||||
| seed | ------------------------------------------------------------------------------------------------GUUCAGU----------- | 4 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------------------------------------------------------------TGGTTCAGTTCAGCAGGG-- | 18 | 13 | 2 | 4 | 4 | 9 | 3 | 12 | 12 | 6 | 1 | |
| -----------------------------------------------------------------------------------------------GGTTCAGTTCAGCAGGGG- | 18 | 1 | - | - | - | 1 | - | 2 | - | - | - | |
| ----------------------------------------------------------------------------------------------TGGTTCAGTTCAGCAGGGG- | 19 | - | 1 | - | - | - | - | - | 2 | 1 | - | |
| rat | tccttgtttcatgagccctctccccccttttttgtgggagggtgagagctaggtggttctaattaaaatcagcagagatgagaaggggtgggaaTGGTTCAGTTCAGCAGGGga | |||||||||||
| ****************************************************************************************************************** | ||||||||||||
| rat | ((((((((...((((((.((((.((((((((((((..((.(((.((((((....)))))).)))....)).))))).....))))))).))))..))))))....)))))))). | 0.970 -42.60 | ||||||||||
| rat | chromosome:17:39016965:39017078:-1 | intergenic |
novel_lenNOK_cloningOK_5varHIGH_bulgeHIGH (2 loci)
block1093985 [novel_lenNOK_cloningOK_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.591 | no | no | 0.40/0.57 | 18/24/0.60 | 0.0 1.6 | 0.6 0.0 | 7 8 | 0 0 | 4 2 | 0 0 | 9 0 | 1 7 | 3arm 3arm | 1 1 | nd nd | 0.29 0.32 | 4 4 | 15 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -------------------------------------------GGGGAUC---------------------- | 7 | novel | |||
| seed | -----------------------------------------------------AUGCUUU------------ | 4 | novel | |||
| seed | --------------------------------------------------CGUAUGC--------------- | 3 | novel | |||
| seed | -------------------------------------------------CCGUAUG---------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T2S2 | T4S2 | T5S1 | |||
| ------------------------------------------TGGGGATCCGTATGCTTTG----------- | 19 | - | 1 | - | 3 | |
| ----------------------------------------------------TATGCTTTGGGAACTCAACT | 20 | 1 | - | - | 3 | |
| -------------------------------------------------CCGTATGCTTTGGGAACTCAACT | 23 | - | - | - | 3 | |
| ------------------------------------------TGGGGATCCGTATGCTTT------------ | 18 | - | - | 1 | 1 | |
| ------------------------------------------TGGGGATCCGTATGCTTTGGG--------- | 21 | 1 | - | - | - | |
| ------------------------------------------------TCCGTATGCTTTGGGAACTCAACT | 24 | - | - | - | 1 | |
| rat | agtggcttttccactgtgcaacatcactactgctccagtctcTGGGGATCCGTATGCTTTGGGAACTCAACT | |||||
| ************************************************************************ | ||||||
| rat | (((....((((((....(((.......(((..((((((...))))))....))))))..))))))....))) | 0.460 -14.21 | ||||
| rat | chromosome:20:5554825:5554896:1 | intergenic |
block1954008 [novel_lenNOK_cloningOK_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.596 | no | no | 0.25/0.28 | 18/20/0.18 | 1.1 | 0.9 | 17 | 0 | 10 | 0 | 17 | 1 | 3arm | 1 | nd | 0.26 | 4 | 17 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | --------------------------------------------------------------AAACAUA----------------------------- | 6 | novel | |||||||||
| seed | ---------------------------------------------------------------AACAUAU---------------------------- | 5 | novel | |||||||||
| seed | -------------------------------------------------------------AAAACAU------------------------------ | 5 | novel | |||||||||
| seed | ----------------------------------------------------------------ACAUAUG--------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------------------------------------------------------------AAAACATATGGCTTTCTAA------------------ | 19 | 1 | - | 1 | - | - | - | 1 | - | 1 | 1 | |
| --------------------------------------------------------------AAACATATGGCTTTCTAA------------------ | 18 | - | - | - | 1 | - | 1 | 1 | - | 1 | - | |
| ------------------------------------------------------------TAAAACATATGGCTTTCTAA------------------ | 20 | - | - | - | - | 1 | - | - | - | - | 2 | |
| ------------------------------------------------------------TAAAACATATGGCTTTCTA------------------- | 19 | - | 2 | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------AACATATGGCTTTCTAAA----------------- | 18 | - | - | - | - | - | - | - | 1 | - | - | |
| --------------------------------------------------------------AAACATATGGCTTTCTAAA----------------- | 19 | - | - | - | - | - | - | - | - | - | 1 | |
| -------------------------------------------------------------AAAACATATGGCTTTCTA------------------- | 18 | - | 1 | - | - | - | - | - | - | - | - | |
| rat | atgccattgttcagttaatatcaaggtgcatgtgtcttgtcatttcttcttatcgctttaTAAAACATATGGCTTTCTAAAgtttgacatcctgcatt | |||||||||||
| ************************************************************************************************** | ||||||||||||
| rat | ((((...((.((((........(((((.(((((((.((((...................)))).)))))))))))).......))))))....)))). | 0.510 -13.07 | ||||||||||
| rat | chromosome:6:91377199:91377296:-1 | intergenic |
novel_lenNOK_cloningOK_5varHIGH_loopOverlap_randfoldOK_bulgeHIGH (2 loci)
block204055 [novel_lenNOK_cloningOK_5varHIGH_loopOverlap_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.48/0.58 | 18/26/0.48 | 1.1 0.0 1.2 0.7 | 0.3 0.0 0.8 3.3 | 15 11 5 3 | 0 0 0 0 | 4 3 3 2 | 0 0 0 0 | 39 24 17 3 | -1 17 24 32 | 3arm 3arm 3arm 3arm | 2 2 2 2 | nd nd nd nd | 0.30 0.48 0.42 0.50 | 4 5 3 5 | 48 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | ----------------------------------------------------------------------------CAGAUAU------------------------------------- | 13 | novel | ||||||
| seed | ---------------------------------------------------------------CCAGAAG-------------------------------------------------- | 8 | novel | ||||||
| seed | --------------------------------------------------------------UCCAGAA--------------------------------------------------- | 7 | novel | ||||||
| seed | ----------------------------------------------------------GUGUUCC------------------------------------------------------- | 4 | novel | ||||||
| seed | -----------------------------------------------------------------------------------CCUGCCA------------------------------ | 3 | novel | ||||||
| seed | --------------------------------------------------------------------------------------------CACAUCC--------------------- | 2 | novel | ||||||
| seed | --------------------------------------------------------------------------------------GCCACUC--------------------------- | 2 | novel | ||||||
| seed | -------------------------------------------------------------------------CCUCAGA---------------------------------------- | 2 | novel | ||||||
| seed | -------------------------------------------------------------------AAGGCUC---------------------------------------------- | 2 | novel | ||||||
| seed | --------------------------------------------------GAGACUG--------------------------------------------------------------- | 1 | novel | ||||||
| seed | ---------------------------------------------------------------------GGCUCCU-------------------------------------------- | 1 | novel | ||||||
| seed | --------------------------------------------------------GUGUGUU--------------------------------------------------------- | 1 | novel | ||||||
| seed | -------------------------------------------------------------------------------------------UCACAUC---------------------- | 1 | novel | ||||||
| seed | ------------------------------------------------------------------------UCCUCAG----------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S2 | T4S1 | T5S1 | |||
| ---------------------------------------------------------------------------TCAGATATCCTGCCACTCACA------------------------ | 21 | - | 1 | - | 1 | - | - | 11 | |
| --------------------------------------------------------------TCCAGAAGGCTCCTCAGAT--------------------------------------- | 19 | - | - | 1 | - | 1 | 1 | 5 | |
| -------------------------------------------------------------TTCCAGAAGGCTCCTCAGA---------------------------------------- | 19 | - | - | - | - | - | - | 7 | |
| ---------------------------------------------------------TGTGTTCCAGAAGGCTCCTCAGA---------------------------------------- | 23 | - | - | - | - | - | - | 3 | |
| ----------------------------------------------------------------------------------TCCTGCCACTCACATCCAG------------------- | 19 | - | - | - | - | - | - | 3 | |
| ------------------------------------------------------------------GAAGGCTCCTCAGATATCCTGCCAC----------------------------- | 25 | - | - | - | - | - | - | 2 | |
| ------------------------------------------------------------------------TCCTCAGATATCCTGCCACTCACA------------------------ | 24 | - | - | - | - | - | - | 2 | |
| -------------------------------------------------------------------------------------TGCCACTCACATCCAGCA----------------- | 18 | 1 | - | 1 | - | - | - | - | |
| --------------------------------------------------------------------AGGCTCCTCAGATATCCTG--------------------------------- | 19 | - | - | - | - | - | - | 1 | |
| ------------------------------------------------------------------------------------------CTCACATCCAGCAGCCACCAA--------- | 21 | 1 | - | - | - | - | - | - | |
| -------------------------------------------------GGAGACTGTGTGTTCCAGAAGG------------------------------------------------- | 22 | - | - | - | - | - | - | 1 | |
| ---------------------------------------------------------TGTGTTCCAGAAGGCTCCTCAGAT--------------------------------------- | 24 | - | - | - | - | - | - | 1 | |
| -------------------------------------------------------TGTGTGTTCCAGAAGGCTCCTCAGA---------------------------------------- | 25 | - | - | - | - | - | - | 1 | |
| -------------------------------------------------------------------------------------------TCACATCCAGCAGCCACCAAGTTGTC--- | 26 | - | - | - | - | - | - | 1 | |
| -------------------------------------------------------------------------------------------TCACATCCAGCAGCCACCAAGTTG----- | 24 | - | - | - | - | - | - | 1 | |
| -----------------------------------------------------------------------CTCCTCAGATATCCTGCCAC----------------------------- | 20 | - | - | - | - | - | - | 1 | |
| rat | agaggcagggggagggggagggggagggagagggggaggaggctggctgggagactgtgtgTTCCAGAAGGCTCCTCAGATATCCTGCCACTCACAtccagcagccaccaagttgtcttg | ||||||||
| ************************************************************************************************************************ | |||||||||
| rat | .((((((.((((....(((....(((((..((((.((((((.((..((((((.((...)).)))))).)).)))))).....)))).)).)))...))).....)).))....)))))). | 0.970 -49.60 | |||||||
| rat | chromosome:12:44297410:44297529:-1 | intergenic |
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