other hairpins
novel_lenNOK_cloningOK_5varHIGH_loopOverlap_randfoldOK_bulgeHIGH (2 loci)
block233536 [novel_lenNOK_cloningOK_5varHIGH_loopOverlap_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.48/0.58 | 18/26/0.48 | 1.1 0.0 1.2 0.7 | 0.3 0.0 0.8 3.3 | 15 11 5 3 | 0 0 0 0 | 4 3 3 2 | 0 0 0 0 | 39 24 17 3 | -1 17 24 32 | 3arm 3arm 3arm 3arm | 2 2 2 2 | nd nd nd nd | 0.30 0.48 0.42 0.50 | 4 5 3 5 | 48 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | ----------------------------------------------------------------------------CAGAUAU------------------------------------- | 13 | novel | ||||||
| seed | ---------------------------------------------------------------CCAGAAG-------------------------------------------------- | 8 | novel | ||||||
| seed | --------------------------------------------------------------UCCAGAA--------------------------------------------------- | 7 | novel | ||||||
| seed | ----------------------------------------------------------GUGUUCC------------------------------------------------------- | 4 | novel | ||||||
| seed | -----------------------------------------------------------------------------------CCUGCCA------------------------------ | 3 | novel | ||||||
| seed | --------------------------------------------------------------------------------------------CACAUCC--------------------- | 2 | novel | ||||||
| seed | --------------------------------------------------------------------------------------GCCACUC--------------------------- | 2 | novel | ||||||
| seed | -------------------------------------------------------------------------CCUCAGA---------------------------------------- | 2 | novel | ||||||
| seed | -------------------------------------------------------------------AAGGCUC---------------------------------------------- | 2 | novel | ||||||
| seed | --------------------------------------------------GAGACUG--------------------------------------------------------------- | 1 | novel | ||||||
| seed | ---------------------------------------------------------------------GGCUCCU-------------------------------------------- | 1 | novel | ||||||
| seed | --------------------------------------------------------GUGUGUU--------------------------------------------------------- | 1 | novel | ||||||
| seed | -------------------------------------------------------------------------------------------UCACAUC---------------------- | 1 | novel | ||||||
| seed | ------------------------------------------------------------------------UCCUCAG----------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S2 | T4S1 | T5S1 | |||
| ---------------------------------------------------------------------------TCAGATATCCTGCCACTCACA------------------------ | 21 | - | 1 | - | 1 | - | - | 11 | |
| --------------------------------------------------------------TCCAGAAGGCTCCTCAGAT--------------------------------------- | 19 | - | - | 1 | - | 1 | 1 | 5 | |
| -------------------------------------------------------------TTCCAGAAGGCTCCTCAGA---------------------------------------- | 19 | - | - | - | - | - | - | 7 | |
| ---------------------------------------------------------TGTGTTCCAGAAGGCTCCTCAGA---------------------------------------- | 23 | - | - | - | - | - | - | 3 | |
| ----------------------------------------------------------------------------------TCCTGCCACTCACATCCAG------------------- | 19 | - | - | - | - | - | - | 3 | |
| ------------------------------------------------------------------GAAGGCTCCTCAGATATCCTGCCAC----------------------------- | 25 | - | - | - | - | - | - | 2 | |
| ------------------------------------------------------------------------TCCTCAGATATCCTGCCACTCACA------------------------ | 24 | - | - | - | - | - | - | 2 | |
| -------------------------------------------------------------------------------------TGCCACTCACATCCAGCA----------------- | 18 | 1 | - | 1 | - | - | - | - | |
| --------------------------------------------------------------------AGGCTCCTCAGATATCCTG--------------------------------- | 19 | - | - | - | - | - | - | 1 | |
| ------------------------------------------------------------------------------------------CTCACATCCAGCAGCCACCAA--------- | 21 | 1 | - | - | - | - | - | - | |
| -------------------------------------------------GGAGACTGTGTGTTCCAGAAGG------------------------------------------------- | 22 | - | - | - | - | - | - | 1 | |
| ---------------------------------------------------------TGTGTTCCAGAAGGCTCCTCAGAT--------------------------------------- | 24 | - | - | - | - | - | - | 1 | |
| -------------------------------------------------------TGTGTGTTCCAGAAGGCTCCTCAGA---------------------------------------- | 25 | - | - | - | - | - | - | 1 | |
| -------------------------------------------------------------------------------------------TCACATCCAGCAGCCACCAAGTTGTC--- | 26 | - | - | - | - | - | - | 1 | |
| -------------------------------------------------------------------------------------------TCACATCCAGCAGCCACCAAGTTG----- | 24 | - | - | - | - | - | - | 1 | |
| -----------------------------------------------------------------------CTCCTCAGATATCCTGCCAC----------------------------- | 20 | - | - | - | - | - | - | 1 | |
| rat | agaggcagggggagggggagggggagggagagggggaggaggctggctgggagactgtgtgTTCCAGAAGGCTCCTCAGATATCCTGCCACTCACAtccagcagccaccaagttgtcttg | ||||||||
| ************************************************************************************************************************ | |||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000056932 ENSRNOG00000037566 RGD1560398_predicted | ||||||||
| rat | .((((((.((((....(((....(((((..((((.((((((.((..((((((.((...)).)))))).)).)))))).....)))).)).)))...))).....)).))....)))))). | 0.970 -49.60 | |||||||
| rat | chromosome:12:43045589:43045708:1 | Same_strand|Intronic_non-coding|ENSRNOT00000056932|ENSRNOG00000037566 ## ENSRNOG00000037566|protein_coding|RGD1560398_predicted| |
novel_lenNOK_cloningOK_5varHIGH_randfoldOK_nonpairedHIGH_bulgeHIGH (2 loci)
block1094108 [novel_lenNOK_cloningOK_5varHIGH_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.58/0.67 | 18/25/0.65 | 1.7 | 0.0 | 26 | 0 | 5 | 0 | 7 | 4 | 5arm | 1 | nd | 0.54 | 8 | 46 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | --------CCCAGAG-------------------------------------------------------------- | 22 | novel | ||||
| seed | -------------AGCAACA--------------------------------------------------------- | 12 | novel | ||||
| seed | ----------CAGAGCA------------------------------------------------------------ | 5 | novel | ||||
| seed | -ACAGAAG--------------------------------------------------------------------- | 4 | novel | ||||
| seed | ---AGAAGCC------------------------------------------------------------------- | 2 | novel | ||||
| seed | -------GCCCAGA--------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S1 | T5S1 | T5S2 | |||
| -------GCCCAGAGCAACACCCTGTGGTGT---------------------------------------------- | 24 | - | 1 | - | 17 | - | |
| ------------GAGCAACACCCTGTGGTGT---------------------------------------------- | 19 | 1 | - | - | 9 | - | |
| GACAGAAGCCCAGAGCAACACC------------------------------------------------------- | 22 | - | - | 1 | 3 | - | |
| ---------CCAGAGCAACACCCTGTGGTG----------------------------------------------- | 21 | 1 | - | - | 2 | - | |
| -------GCCCAGAGCAACACCCTGT--------------------------------------------------- | 19 | - | - | - | 2 | - | |
| ------------GAGCAACACCCTGTGGTG----------------------------------------------- | 18 | - | - | - | 2 | - | |
| ---------CCAGAGCAACACCCTGTGGTGT---------------------------------------------- | 22 | 2 | - | - | - | - | |
| --CAGAAGCCCAGAGCAACACCCT----------------------------------------------------- | 22 | - | - | - | 1 | - | |
| ------AGCCCAGAGCAACACCCTGTGGTGT---------------------------------------------- | 25 | - | - | - | 1 | - | |
| -------GCCCAGAGCAACACCCTGTGGTG----------------------------------------------- | 23 | 1 | - | - | - | - | |
| --CAGAAGCCCAGAGCAACACC------------------------------------------------------- | 20 | - | - | - | - | 1 | |
| -------GCCCAGAGCAACACCCTG---------------------------------------------------- | 18 | - | - | - | 1 | - | |
| rat | gacagaaGCCCAGAGCAACACCCTGTGGTGTattggacagaaacggaaggtatgggggtggggtnggggttgagggt | ||||||
| ***************************************************************************** | |||||||
| rat | .((...(((((...((..((((((........(((........)))........))))))..))..)))))....)) | 0.620 -20.79 | |||||
| rat | chromosome:20:5559788:5559864:1 | intergenic |
block2161921 [novel_lenNOK_cloningOK_5varHIGH_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.55/0.62 | 18/24/0.60 | 1.5 | 2.1 | 25 | 0 | 10 | 0 | 7 | 13 | 3arm | 4 | nd | 0.39 | 5 | 25 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | ------------------------------------------------------------CAGGAGC----------------------- | 11 | novel | |||||||||
| seed | -------------------------------------------------------------AGGAGCC---------------------- | 6 | novel | |||||||||
| seed | --------------------------------------------------------------GGAGCCA--------------------- | 5 | novel | |||||||||
| seed | -----------------------------------------------------------ACAGGAG------------------------ | 3 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------------------------------------ACAGGAGCCAACAGCAGT------------- | 18 | - | - | - | 1 | 1 | 2 | - | - | - | - | |
| -------------------------------------------------------------AGGAGCCAACAGCAGTGTCC--------- | 20 | 1 | 2 | - | - | - | - | - | - | - | - | |
| ------------------------------------------------------------CAGGAGCCAACAGCAGTG------------ | 18 | - | - | - | - | - | 1 | - | - | 2 | - | |
| -----------------------------------------------------------ACAGGAGCCAACAGCAGTGTCCTC------- | 24 | - | 1 | - | - | - | - | 1 | 1 | - | - | |
| -----------------------------------------------------------ACAGGAGCCAACAGCAGTG------------ | 19 | - | - | 2 | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------------CAGGAGCCAACAGCAGTGTCC--------- | 21 | - | 1 | 1 | - | - | - | - | - | - | - | |
| -------------------------------------------------------------AGGAGCCAACAGCAGTGTCCTC------- | 22 | 1 | - | - | - | - | - | - | - | - | 1 | |
| ----------------------------------------------------------GACAGGAGCCAACAGCAGTG------------ | 20 | 2 | - | - | - | - | - | - | - | - | - | |
| ----------------------------------------------------------GACAGGAGCCAACAGCAGTGTC---------- | 22 | - | - | - | - | 1 | - | - | - | - | - | |
| ------------------------------------------------------------CAGGAGCCAACAGCAGTGTCCTC------- | 23 | 1 | - | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------ACAGGAGCCAACAGCAGTGT----------- | 20 | 1 | - | - | - | - | - | - | - | - | - | |
| rat | catctttctgggggcttctgtttacaacccagggtccctgaggttggggagggggggtGACAGGAGCCAACAGCAGTGTCCTCtagatga | |||||||||||
| ****************************************************************************************** | ||||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000051458 ENSRNOG00000031915 Hdac10 | |||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000055865 ENSRNOG00000031915 Hdac10 | |||||||||||
| rat | (((((..(((..((((((((.((((..(((....(((((......))))).)))..))))))))))))..)))...........))))). | 0.620 -39.22 | ||||||||||
| rat | chromosome:7:127424446:127424535:-1 | Same_strand|Intronic_coding|ENSRNOT00000055865|ENSRNOG00000031915 ## ENSRNOG00000031915|protein_coding|Hdac10|Histone deacetylase 10 (HD10). [Source:UniProtKB/Swiss-Prot;Acc:Q569C4] |
novel_lenNOK_cloningOK_DicerNOK_5varHIGH_loopOverlap (2 loci)
block373905 [novel_lenNOK_cloningOK_DicerNOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.099 | no | no | 0.58/0.74 | 18/22/0.48 | 4.0 0.8 | 4.6 0.5 | 19 4 | 0 0 | 7 3 | 0 0 | 7 1 | -19 1 | 3arm_loop 3arm | 1 1 | nd nd | 0.41 0.26 | 3 2 | 23 | 8 | 0 | 10 |
| reads | miRBase family seed | |||||||||
| seed | ------------------------CCAGCAG---------------------------- | 3 | novel | |||||||
| seed | ----------------GGAAGCG------------------------------------ | 3 | novel | |||||||
| seed | ----------------------GGCCAGC------------------------------ | 3 | novel | |||||||
| seed | -------------------------------ACACCGA--------------------- | 2 | novel | |||||||
| seed | -----------------------------AGACACC----------------------- | 2 | novel | |||||||
| seed | ---------------------CGGCCAG------------------------------- | 2 | novel | |||||||
| seed | ------------------------------------GAGCUUC---------------- | 2 | novel | |||||||
| seed | -----------------------GCCAGCA----------------------------- | 2 | novel | |||||||
| seed | -------------------------------------AGCUUCA--------------- | 1 | novel | |||||||
| seed | ----------------------------CAGACAC------------------------ | 1 | novel | |||||||
| seed | --------------------------------CACCGAG-------------------- | 1 | novel | |||||||
| seed | --------------------------------------GCUUCAG-------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| ---------------------CGGCCAGCAGACACCGAGC------------------- | 19 | - | 2 | - | - | 1 | - | - | - | |
| -----------------------------------CGAGCTTCAGCAGTCGGCCCTG-- | 22 | - | 2 | - | - | - | - | - | - | |
| ----------------------GGCCAGCAGACACCGAGC------------------- | 18 | 1 | - | - | - | - | - | - | 1 | |
| ------------------------------GACACCGAGCTTCAGCAGTCGG------- | 22 | - | - | - | - | 2 | - | - | - | |
| --------------------GCGGCCAGCAGACACCGA--------------------- | 18 | - | - | - | - | 1 | - | 1 | - | |
| -----------------------GCCAGCAGACACCGAGCTTC---------------- | 20 | - | - | 2 | - | - | - | - | - | |
| ----------------------------CAGACACCGAGCTTCAGCAGTC--------- | 22 | - | 2 | - | - | - | - | - | - | |
| -------------------------------------AGCTTCAGCAGTCGGCCCT--- | 19 | - | - | - | - | - | 1 | - | - | |
| ---------------AGGAAGCGGCCAGCAGACAC------------------------ | 20 | - | - | - | - | - | - | 1 | - | |
| ---------------AGGAAGCGGCCAGCAGAC-------------------------- | 18 | - | 1 | - | - | - | - | - | - | |
| ---------------AGGAAGCGGCCAGCAGACACC----------------------- | 21 | - | - | - | - | 1 | - | - | - | |
| -------------------------------ACACCGAGCTTCAGCAGTC--------- | 19 | - | - | - | - | 1 | - | - | - | |
| ---------------------------GCAGACACCGAGCTTCAGC------------- | 19 | - | - | - | - | - | - | - | 1 | |
| ------------------------------------GAGCTTCAGCAGTCGGCCCTGT- | 22 | - | - | - | 1 | - | - | - | - | |
| -----------------------GCCAGCAGACACCGAGCT------------------ | 18 | - | - | - | 1 | - | - | - | - | |
| rat | gcagggtgaacgctcAGGAAGCGGCCAGCAGACACCGAGCTTCAGCAGTCGGCCCTGTa | |||||||||
| *********************************************************** | ||||||||||
| --------------------------------------------------------------------- | ENSRNOT00000007162 ENSRNOG00000005393 Sertad2 | |||||||||
| rat | (((((((..(((((.(((...(((..........)))..))).))).))..))))))). | 0.990 -21.80 | ||||||||
| rat | chromosome:14:101427359:101427417:-1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000007162|ENSRNOG00000005393 ## ENSRNOG00000005393|protein_coding|Sertad2|SERTA domain containing 2 [Source:RefSeq_peptide;Acc:NP_001020074] |
block1093490 [novel_lenNOK_cloningOK_DicerNOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.395 | no | no | 0.44/0.52 | 18/26/0.65 | 3.3 0.0 | 5.6 0.0 | 14 1 | 0 0 | 7 1 | 0 0 | 8 3 | -24 -1 | 3arm_loop 3arm | 1 1 | nd nd | 0.62 0.28 | 11 3 | 31 | 7 | 0 | 11 |
| reads | miRBase family seed | ||||||||
| seed | ------------------------------------ACCCACA------------------------ | 12 | novel | ||||||
| seed | -------------------------ACCCUAC----------------------------------- | 6 | novel | ||||||
| seed | ------------------------------ACUCUUA------------------------------ | 5 | novel | ||||||
| seed | -----------------------------------------------ACAGUCU------------- | 1 | novel | ||||||
| seed | ---------------------------------CUUACCC--------------------------- | 1 | novel | ||||||
| seed | -------------------------------------------GUACACA----------------- | 1 | novel | ||||||
| seed | -------------------------------------CCCACAG----------------------- | 1 | novel | ||||||
| seed | ------------------ACCCUUU------------------------------------------ | 1 | novel | ||||||
| seed | -----------------------------------UACCCAC------------------------- | 1 | novel | ||||||
| seed | ------------------------------------------AGUACAC------------------ | 1 | novel | ||||||
| seed | ------------------------UACCCUA------------------------------------ | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T3S2 | T4S1 | T5S1 | |||
| -----------------------------------TACCCACAGTACACAGTCTGGAAG-------- | 24 | - | - | - | - | - | 1 | 4 | |
| -----------------------------------TACCCACAGTACACAGTCT------------- | 19 | 1 | - | 1 | - | - | - | 2 | |
| ------------------------TACCCTACTCTTACCCAC------------------------- | 18 | 2 | - | 1 | - | - | - | - | |
| -----------------------------TACTCTTACCCACAGTACACAGTC-------------- | 24 | - | - | - | 1 | - | - | 2 | |
| -----------------------------------TACCCACAGTACACAGTCTGG----------- | 21 | - | - | - | - | - | - | 2 | |
| ------------------------TACCCTACTCTTACCCACAGT---------------------- | 21 | - | - | - | - | 1 | - | 1 | |
| -----------------------------TACTCTTACCCACAGTACACAG---------------- | 22 | - | - | - | - | - | - | 2 | |
| ------------------------TACCCTACTCTTACCCACAGTACA------------------- | 24 | - | - | - | - | - | - | 1 | |
| -----------------------------------------CAGTACACAGTCTGGAAGCT------ | 20 | - | - | - | - | - | - | 1 | |
| ------------------------------------ACCCACAGTACACAGTCTGGAAG-------- | 23 | - | - | - | - | - | - | 1 | |
| ------------------------------------------AGTACACAGTCTGGAAGC------- | 18 | - | - | - | - | - | - | 1 | |
| ----------------------------------------------CACAGTCTGGAAGCTATG--- | 18 | - | - | - | - | - | - | 1 | |
| --------------------------------TCTTACCCACAGTACACAGTC-------------- | 21 | - | - | - | - | - | - | 1 | |
| -----------------------TTACCCTACTCTTACCCACAGTACAC------------------ | 26 | - | - | - | - | - | - | 1 | |
| ----------------------------------TTACCCACAGTACACAGT--------------- | 18 | - | - | - | - | - | - | 1 | |
| -----------------------------------TACCCACAGTACACAGTCTG------------ | 20 | 1 | - | - | - | - | - | - | |
| -----------------TACCCTTTACCCTACTCTTACCC--------------------------- | 23 | - | 1 | - | - | - | - | - | |
| rat | tcccgtgtcacagcctgtacccttTACCCTACTCTTACCCACAGTACACAGTCTGGAAGctatgggg | ||||||||
| ******************************************************************* | |||||||||
| rat | .(((((((..(((.((((.............................)))).)))...)).))))). | 0.990 -12.55 | |||||||
| rat | chromosome:20:5537253:5537319:1 | intergenic |
novel_lenNOK_cloningOK_Multihit_nonpairedHIGH (2 loci)
block962529 [novel_lenNOK_cloningOK_Multihit_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.495 | no | no | 0.44/0.44 | 18/18/0.00 | 0.0 | 0.0 | 11 | 0 | 4 | 0 | 15 | 17 | 3arm | 40 | nd | 0.33 | 2 | 12 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -----------------------------------------------------------------------------CAGUGCA------------------------- | 12 | miR-148b/152 | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T3S2 | T4S1 | |||
| ----------------------------------------------------------------------------TCAGTGCATGACAAGGTT--------------- | 18 | 4 | 1 | 4 | 3 | |
| rat | ctgtgcctgggatggagccagtgctagcaacctaggaagcagctcagggagtgtgcttagtatgtgccccattgctTCAGTGCATGACAAGGTTaatctgcaggagtag | |||||
| ************************************************************************************************************* | ||||||
| rat | (((..((((((((..((((..((.(((((......(((((((....(((..(((((...)))))..)))..)))))))..))).)).)).)))).)))).))))..))) | 0.510 -32.10 | ||||
| rat | chromosome:1:51444513:51444621:1 | intergenic |
block2066088 [novel_lenNOK_cloningOK_Multihit_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.366 | no | no | 0.40/0.47 | 18/22/0.18 | 0.3 0.0 | 0.3 0.0 | 7 1 | 0 0 | 2 1 | 0 0 | 6 1 | 15 20 | 3arm 3arm | 23 23 | nd nd | 0.47 0.35 | 4 3 | 11 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------------CGGUUUG------------------ | 6 | novel | |
| seed | ------------------------------------------------------------------GGUUUGU----------------- | 4 | novel | |
| seed | ----------------------------------------------------------------------UGUGUCA------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| ----------------------------------------------------------------CCGGTTTGTGTCAGTAGAA------- | 19 | - | 5 | |
| -----------------------------------------------------------------CGGTTTGTGTCAGTAGAAT------ | 19 | 1 | 2 | |
| -----------------------------------------------------------------CGGTTTGTGTCAGTAGAA------- | 18 | 1 | - | |
| ----------------------------------------------------------------CCGGTTTGTGTCAGTAGAATTG---- | 22 | 1 | - | |
| ---------------------------------------------------------------------TTGTGTCAGTAGAATTGCGA- | 20 | 1 | - | |
| rat | ctcccagaatacatacctccacggtgatttcagagttcttcctcagtcctgaggtttgggattcCCGGTTTGTGTCAGTAGAATtgcgag | |||
| ****************************************************************************************** | ||||
| rat | (((.(((..(((((((.....(((..((..((((......(((((....)))))))))..))..)))....))))..)))...))).))) | 0.860 -22.90 | ||
| rat | chromosome:6:134261271:134261360:1 | intergenic |
novel_lenNOK_cloningOK_mirtron_bulgeHIGH (2 loci)
block67126 [novel_lenNOK_cloningOK_mirtron_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.062 | no | no | 0.50/0.55 | 18/23/0.64 | 0.2 | 1.8 | 14 | 0 | 4 | 0 | 19 | 7 | 3arm | 1 | 0 | 0.27 | 4 | 14 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | --------------------------------------------------------------CUCCUCU---------------------------------- | 11 | novel | |||
| seed | ---------------------------------------------------------------UCCUCUC--------------------------------- | 3 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T4S1 | T4S2 | T5S1 | |||
| -------------------------------------------------------------TCTCCTCTCGTTCCTCAAC----------------------- | 19 | 1 | 1 | 2 | - | |
| -------------------------------------------------------------TCTCCTCTCGTTCCTCAACCTAG------------------- | 23 | - | 1 | 3 | - | |
| --------------------------------------------------------------CTCCTCTCGTTCCTCAACCTAG------------------- | 22 | 1 | - | 1 | 1 | |
| -------------------------------------------------------------TCTCCTCTCGTTCCTCAACCT--------------------- | 21 | - | 1 | 1 | - | |
| -------------------------------------------------------------TCTCCTCTCGTTCCTCAA------------------------ | 18 | - | - | 1 | - | |
| rat | ggatgccgatgagctcttggctgaaagggggtcggggggacaaggaggaaatgactactttTCTCCTCTCGTTCCTCAACCTAGctggtggctcctggaaccc | |||||
| ******************************************************************************************************* | ||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000008184 ENSRNOG00000006098 LOC689918 | |||||
| rat | ((...(((..(((((.(((((((...((((..((((((((.((((((.......)).))))..))))))))..))))....))))))).))))).)))..)). | 0.950 -38.40 | ||||
| rat | chromosome:10:31266740:31266842:1 | Same_strand|Intronic_coding|ENSRNOT00000008184|ENSRNOG00000006098 ## Same_strand|Boundary_non-coding|ENSRNOT00000007978|ENSRNOG00000006098 ## ENSRNOG00000006098|protein_coding|LOC689918| |
block1430759 [novel_lenNOK_cloningOK_mirtron_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.216 | no | no | 0.55/0.58 | 18/21/0.67 | 0.0 | 0.6 | 21 | 0 | 2 | 0 | 23 | 2 | 3arm | 1 | 0 | 0.29 | 4 | 27 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------ACCCUUG------------------------------------ | 26 | novel | |
| seed | ----------------------------------------------------------CCCUUGC----------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S1 | T4S2 | |||
| --------------------------------------------------------TACCCTTGCTATCCCTGCCAG----------------------- | 21 | 5 | 7 | |
| --------------------------------------------------------TACCCTTGCTATCCCTGCCA------------------------ | 20 | 5 | 1 | |
| --------------------------------------------------------TACCCTTGCTATCCCTGCC------------------------- | 19 | 1 | 4 | |
| --------------------------------------------------------TACCCTTGCTATCCCTGC-------------------------- | 18 | 2 | 1 | |
| ---------------------------------------------------------ACCCTTGCTATCCCTGCCA------------------------ | 19 | 1 | - | |
| rat | tcggaaagctgactgtgcaagggcccaggggtgagcagggacagggagcagccaccTACCCTTGCTATCCCTGCCAGgtgccaaggccactggcgatgaa | |||
| **************************************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000007896 ENSRNOG00000036732 LOC499951 | |||
| rat | (((....(((...((.((...(((((((((((.(((((((..(((.........)))..)))))))))))))....)).)))...))))..)))..))). | 0.470 -37.30 | ||
| rat | chromosome:3:169386835:169386934:-1 | Same_strand|Intronic_coding|ENSRNOT00000007896|ENSRNOG00000036732 ## ENSRNOG00000036732|protein_coding|LOC499951|similar to Transcription factor GATA-5 (GATA binding factor-5) (LOC499951), mRNA [Source:RefSeq_dna;Acc:NM_001024316] |
novel_lenNOK_cloningOK_mirtron_nonpairedHIGH (2 loci)
block322329 [novel_lenNOK_cloningOK_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.260 | no | no | 0.50/0.57 | 18/23/0.67 | 0.1 | 1.2 | 12 | 0 | 7 | 0 | 16 | 8 | 3arm | 1 | 0 | 0.33 | 3 | 12 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | --------------------------------------------------------------UGCUCUC------------------------------- | 11 | novel | ||||||
| seed | -------------------------------------------------------------UUGCUCU-------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | |||
| -------------------------------------------------------------TTGCTCTCCTACCCTACCTAG------------------ | 21 | 2 | 2 | - | - | - | - | - | |
| -------------------------------------------------------------TTGCTCTCCTACCCTACCTA------------------- | 20 | 1 | - | - | - | - | - | 1 | |
| -------------------------------------------------------------TTGCTCTCCTACCCTACCT-------------------- | 19 | 1 | - | - | 1 | - | - | - | |
| -------------------------------------------------------------TTGCTCTCCTACCCTACC--------------------- | 18 | - | - | 1 | - | - | 1 | - | |
| -------------------------------------------------------------TTGCTCTCCTACCCTACCTAGCC---------------- | 23 | 1 | - | - | - | - | - | - | |
| ------------------------------------------------------------CTTGCTCTCCTACCCTACCTA------------------- | 21 | - | - | - | - | 1 | - | - | |
| rat | cgcagagagacagtattggagggaggcttgcaggggagcaggactattctgaggtcttgtCTTGCTCTCCTACCCTACCTAGCCtggtgatcgatacgct | ||||||||
| **************************************************************************************************** | |||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000005346 ENSRNOG00000003983 LOC678975 | ||||||||
| rat | .((...((..(((....(((((((((...(((((...((((((((.......)))))))))))))...))).)))).))....)))....)).....)). | 0.540 -32.60 | |||||||
| rat | chromosome:13:87261233:87261332:1 | Same_strand|Boundary_coding|ENSRNOT00000005346|ENSRNOG00000003983 ## ENSRNOG00000003983|protein_coding|LOC678975|similar to Prefoldin subunit 2 (LOC685607), mRNA [Source:RefSeq_dna;Acc:NM_001109476] |
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