other hairpins
novel_lenNOK_cloningOK_mirtron_nonpairedHIGH (2 loci)
block1567738 [novel_lenNOK_cloningOK_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.021 | no | no | 0.44/0.50 | 18/25/0.25 | 0.0 | 3.5 | 8 | 0 | 6 | 0 | 22 | 3 | 3arm | 1 | 0 | 0.33 | 3 | 16 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | --------------------------------------------------------CUGCUGA--------------------------------------- | 15 | novel | |||||
| seed | ---------------------------------------------------------UGCUGAC-------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T2S2 | T3S1 | T3S2 | T4S1 | T5S1 | T5S2 | |||
| -------------------------------------------------------TCTGCTGACTCTTAGATCCTCTCAG---------------------- | 25 | - | 1 | 2 | 1 | 1 | 2 | |
| -------------------------------------------------------TCTGCTGACTCTTAGATC----------------------------- | 18 | - | - | - | - | 4 | - | |
| -------------------------------------------------------TCTGCTGACTCTTAGATCC---------------------------- | 19 | - | - | 1 | - | - | - | |
| -------------------------------------------------------TCTGCTGACTCTTAGATCCTC-------------------------- | 21 | 1 | - | - | - | - | - | |
| -------------------------------------------------------TCTGCTGACTCTTAGATCCTCTCA----------------------- | 24 | - | - | 1 | - | - | - | |
| --------------------------------------------------------CTGCTGACTCTTAGATCCTCTCAG---------------------- | 24 | - | - | - | 1 | - | - | |
| -------------------------------------------------------TCTGCTGACTCTTAGATCCTCTC------------------------ | 23 | - | - | 1 | - | - | - | |
| rat | gtttgctgtgcatgtgatagttcttggttttaaactgtcagaccaactaaacagtTCTGCTGACTCTTAGATCCTCTCAGcttcaggttgcatttgctgact | |||||||
| ****************************************************************************************************** | ||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000012622 ENSRNOG00000009484 LOC500199 | |||||||
| rat | (((.((.((((((.(((.((((...((.(((((...(((((...((((....))))...)))))..))))).))....))))))).)).))))..)).))). | 1.000 -27.30 | ||||||
| rat | chromosome:4:105162595:105162696:-1 | Same_strand|Intronic_coding|ENSRNOT00000012622|ENSRNOG00000009484 ## ENSRNOG00000009484|protein_coding|LOC500199|LOC500199 protein. [Source:UniProtKB/TrEMBL;Acc:Q4KM70] |
novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap_randfoldOK (2 loci)
block154420 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.48/0.68 | 18/22/0.50 | 1.7 0.0 0.0 | 1.7 0.0 1.0 | 3 1 6 | 0 0 0 | 2 1 3 | 0 0 0 | 31 38 42 | 1 -2 -10 | 5arm 5arm_loop 5arm_loop_3arm | 1 1 1 | nd nd nd | 0.21 0.33 0.50 | 2 3 9 | 10 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | -------------------------------------------GGCAGGA---------------------------------------------------------------------- | 6 | novel | |||||
| seed | ----------------------------------GAGCAGG------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | ---------------------------------------GGAAGGC-------------------------------------------------------------------------- | 1 | novel | |||||
| seed | -----------------------------------AGCAGGA------------------------------------------------------------------------------ | 1 | novel | |||||
| seed | --------------------------------GCGAGCA--------------------------------------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T3S1 | T3S2 | T4S1 | T5S1 | T5S2 | |||
| ------------------------------------------AGGCAGGATTCGGAACTGAA---------------------------------------------------------- | 20 | - | - | 2 | - | - | - | |
| ------------------------------------------AGGCAGGATTCGGAACTGAAAC-------------------------------------------------------- | 22 | 2 | - | - | - | - | - | |
| ---------------------------------CGAGCAGGAAGGCAGGATT-------------------------------------------------------------------- | 19 | - | 1 | - | - | - | - | |
| --------------------------------------AGGAAGGCAGGATTCGGA---------------------------------------------------------------- | 18 | - | - | - | - | - | 1 | |
| ------------------------------------------AGGCAGGATTCGGAACTGAAA--------------------------------------------------------- | 21 | 1 | - | - | - | - | - | |
| -------------------------------CGCGAGCAGGAAGGCAGGA---------------------------------------------------------------------- | 19 | - | - | - | 1 | - | - | |
| ----------------------------------GAGCAGGAAGGCAGGATTC------------------------------------------------------------------- | 19 | - | 1 | - | - | - | - | |
| ------------------------------------------AGGCAGGATTCGGAACTGA----------------------------------------------------------- | 19 | - | - | - | - | 1 | - | |
| rat | ctcggtgttcagtgcggcaccacggcggctgCGCGAGCAGGAAGGCAGGATTCGGAACTGAAACgaacctgcgtatctctatctccagcagcctgtcgctgtggccactgaactttaggg | |||||||
| ************************************************************************************************************************ | ||||||||
| rat | (((...((((((((.....(((((((((((((..(((.((((..(((((.((((.........)))))))))...)).))..)))..))))))....))))))).))))))))....))) | 0.990 -49.90 | ||||||
| rat | chromosome:11:34803675:34803794:1 | intergenic |
sblock10992 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.37/0.63 | 18/25/0.25 | 2.3 0.0 3.8 0.0 | 2.3 0.0 4.2 0.0 | 3 1 15 1 | 0 0 0 0 | 1 1 3 1 | 0 0 0 0 | 1 9 36 26 | 37 31 -18 1 | 5arm 5arm 3arm_loop 3arm | 1 1 3 3 | nd nd nd nd | 0.16 0.14 0.06 0.08 | 1 1 1 2 | 20 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -----------------------------------------------------------GCAUUUG--------------------------------------------------- | 7 | novel | ||
| seed | ------------------------------------------------------AGAUUGC-------------------------------------------------------- | 4 | novel | ||
| seed | ----------------------------------------------------------UGCAUUU---------------------------------------------------- | 3 | novel | ||
| seed | -------------------------------------------------------------------AUGUGGC------------------------------------------- | 1 | novel | ||
| seed | ------CGAGACC-------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------------------UGUAUGU---------------------------------------------- | 1 | miR-297 | ||
| seed | -----ACGAGAC--------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | --CAGACGA------------------------------------------------------------------------------------------------------------ | 1 | novel | ||
| seed | ----------ACCAGGU---------------------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T5S1 | T5S2 | |||
| -----------------------------------------------------CAGATTGCATTTGTATGTG--------------------------------------------- | 19 | - | 3 | - | |
| ----------------------------------------------------------TGCATTTGTATGTGGCTGG---------------------------------------- | 19 | 1 | 2 | - | |
| ----------------------------------------------------------TGCATTTGTATGTGGCTGGG--------------------------------------- | 20 | 1 | 1 | - | |
| ---------------------------------------------------------TTGCATTTGTATGTGGCTG----------------------------------------- | 19 | - | 2 | - | |
| ----------------------------------------------------------TGCATTTGTATGTGGCTGGGC-------------------------------------- | 21 | - | 1 | - | |
| -----------------------------------------------------CAGATTGCATTTGTATGTGGCTGG---------------------------------------- | 24 | - | 1 | - | |
| -TCAGACGAGACCAGGTGGT------------------------------------------------------------------------------------------------- | 19 | - | 1 | - | |
| ----------------------------------------------------------TGCATTTGTATGTGGCTG----------------------------------------- | 18 | - | - | 1 | |
| ---------------------------------------------------------------TTGTATGTGGCTGGGCTG------------------------------------ | 18 | - | 1 | - | |
| ----GACGAGACCAGGTGGTGGA---------------------------------------------------------------------------------------------- | 19 | - | 1 | - | |
| ---------GACCAGGTGGTGGACAGTGTG--------------------------------------------------------------------------------------- | 21 | - | 1 | - | |
| ---------------------------------------------------------TTGCATTTGTATGTGGCT------------------------------------------ | 18 | - | 1 | - | |
| -----ACGAGACCAGGTGGTGGAC--------------------------------------------------------------------------------------------- | 19 | - | 1 | - | |
| ------------------------------------------------------------------TATGTGGCTGGGCTGCAGTAGATAC-------------------------- | 25 | - | 1 | - | |
| rat | cTCAGACGAGACCAGGTGGTGGACAGTGTGgctgggaggcaaacgctcagccaCAGATTGCATTTGTATGTGGCTGGGCTGCAGTAGATACtgttggccccctggtctgtactgagg | ||||
| ********************************************************************************************************************* | |||||
| rat | (((((((.((((((((.(((.((((((((.(((.....(((...(((((((((((...(((....))))))))))))))))))))..)))))))).))).)))))))))).))))). | 0.670 -64.00 | |||
| rat | chromosome:7:116623834:116623950:-1 | intergenic |
novel_lenNOK_cloningOK_multiarm_5varHIGH_nonpairedHIGH_bulgeHIGH (2 loci)
block1109174 [novel_lenNOK_cloningOK_multiarm_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.176 | no | no | 0.42/0.50 | 18/25/0.32 | 1.5 0.0 | 0.7 0.0 | 11 1 | 0 0 | 3 1 | 0 0 | 30 44 | 1 -6 | 5arm_loop 5arm_loop_3arm | 1 2 | nd nd | 0.36 0.50 | 4 6 | 22 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------------------------CCUUAAG--------------------------------------------------------------------------- | 10 | novel | ||
| seed | -----------------------------------AAGUCUC----------------------------------------------------------------------- | 7 | novel | ||
| seed | --------------------------------CUUAAGU-------------------------------------------------------------------------- | 3 | novel | ||
| seed | ---------------------------------UUAAGUC------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------GAUGAGU------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S1 | |||
| ------------------------------TCCTTAAGTCTCCGTGATGAGTTTG---------------------------------------------------------- | 25 | - | 1 | 7 | |
| ----------------------------------TAAGTCTCCGTGATGAGTT------------------------------------------------------------ | 19 | 2 | - | 4 | |
| -------------------------------CCTTAAGTCTCCGTGATGAGTTTG---------------------------------------------------------- | 24 | - | - | 2 | |
| --------------------------------------------TGATGAGTTTGCCCAGAA--------------------------------------------------- | 18 | - | - | 1 | |
| ------------------------------TCCTTAAGTCTCCGTGATGAGT------------------------------------------------------------- | 22 | - | - | 1 | |
| ----------------------------------TAAGTCTCCGTGATGAGTTTGCCC------------------------------------------------------- | 24 | - | - | 1 | |
| --------------------------------CTTAAGTCTCCGTGATGAGTTTG---------------------------------------------------------- | 23 | - | - | 1 | |
| -------------------------------CCTTAAGTCTCCGTGATGAGT------------------------------------------------------------- | 21 | - | - | 1 | |
| ------------------------------TCCTTAAGTCTCCGTGATGAG-------------------------------------------------------------- | 21 | 1 | - | - | |
| rat | gccttggtcctgaatgagctggattctcacTCCTTAAGTCTCCGTGATGAGTTTGcccagaagtaggcgaagtgaccaggaaggaggcaatctgctgcaaggaggcctgggct | ||||
| ***************************************************************************************************************** | |||||
| --------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000035355 ENSRNOG00000023712 Stox1_predicted | ||||
| rat | ((((.((((((...(((((.(((((....(((((....(((..((.((..((((((......))))))...)).))..))))))))..)))))))).)).)).)))).)))). | 0.550 -36.40 | |||
| rat | chromosome:20:29930310:29930422:1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000035355|ENSRNOG00000023712 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000057578|ENSRNOG00000023712 ## ENSRNOG00000023712|protein_coding|Stox1_predicted| |
sblock1316 [novel_lenNOK_cloningOK_multiarm_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.303 | no | no | 0.21/0.36 | 19/23/0.30 | 0.8 0.0 1.2 | 0.8 0.0 2.0 | 4 2 4 | 0 0 0 | 1 2 1 | 0 0 0 | 35 26 9 | 1 3 19 | 5arm 3arm 3arm | 5 5 5 | nd nd nd | 0.42 0.43 0.37 | 7 5 5 | 10 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------------------------------------GGAACAU------------------------- | 3 | novel | |
| seed | ---------------------------------------UAGACUU----------------------------------------------------------------------- | 3 | novel | |
| seed | ---------------------------------------------------------------------GUCUUGU----------------------------------------- | 2 | novel | |
| seed | ------------------------------------GCUUAGA-------------------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------------------------------------------AUAUUGC-------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S1 | T5S1 | |||
| --------------------------------------TTAGACTTTCTTTGATATA------------------------------------------------------------ | 19 | - | 3 | |
| --------------------------------------------------------------------TGTCTTGTCTTTTGAATGGAACA-------------------------- | 23 | 1 | 1 | |
| ------------------------------------------------------------------------------------TGGAACATATTGCATTACT-------------- | 19 | - | 2 | |
| -----------------------------------------------------------------------------------------CATATTGCATTACTTCCAA--------- | 19 | - | 1 | |
| ------------------------------------------------------------------------------------TGGAACATATTGCATTACTTCC----------- | 22 | - | 1 | |
| -----------------------------------TGCTTAGACTTTCTTTGAT--------------------------------------------------------------- | 19 | - | 1 | |
| rat | cctgtccttccagtaagcagttgaatgccatgatcTGCTTAGACTTTCTTTGATATAaagaaacattaTGTCTTGTCTTTTGAATGGAACATATTGCATTACTTCCAAaattccagg | |||
| ********************************************************************************************************************* | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000043702 ENSRNOG00000034080 RGD1563490_predicted | |||
| rat | ((((.......((((((((((......((((..((.....((((.......(((((((.......)))))))..))))...)))))).....))))).)))))..........)))) | 0.740 -20.73 | ||
| rat | chromosome:1:47862261:47862377:1 | Same_strand|Intronic_non-coding|ENSRNOT00000043702|ENSRNOG00000034080 ## ENSRNOG00000034080|protein_coding|RGD1563490_predicted| |
novel_lenNOK_cloningOK_multiarm_5varHIGH_randfoldOK (2 loci)
sblock140 [novel_lenNOK_cloningOK_multiarm_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.26/0.54 | 19/25/0.36 | 1.5 0.0 0.0 0.0 | 1.0 3.0 1.0 0.0 | 2 2 2 4 | 0 0 0 0 | 1 1 1 2 | 0 0 0 0 | 5 27 29 2 | 26 4 8 31 | 5arm 5arm 3arm 3arm | 1 1 4 4 | nd nd nd nd | 0.26 0.21 0.29 0.24 | 2 1 3 5 | 11 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------------------------------------CCCCUGG------------------- | 5 | miR-331 | |
| seed | ---------------------------------------------------------------------UCCACAU------------------------------------------ | 2 | novel | |
| seed | ----------------------------GACAGCC----------------------------------------------------------------------------------- | 2 | novel | |
| seed | ------GUUACUA--------------------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------ACUAUGU------------------------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S1 | |||
| -------------------------------------------------------------------------------------------TCCCCTGGAAGATCACAAGAGCTCA-- | 25 | - | 4 | |
| -----TGTTACTATGTGATGTTACTTTT------------------------------------------------------------------------------------------ | 23 | - | 1 | |
| ---------------------------TGACAGCCCAAGAATTTGTTTTTTT------------------------------------------------------------------ | 25 | - | 1 | |
| --------------------------------------------------------------------TTCCACATGTTCTAGGACT------------------------------- | 19 | - | 1 | |
| -------------------------------------------------------------------------------------------TCCCCTGGAAGATCACAAGAGCTC--- | 24 | 1 | - | |
| ---------------------------TGACAGCCCAAGAATTTGT------------------------------------------------------------------------ | 19 | - | 1 | |
| --------TACTATGTGATGTTACTTTTGA---------------------------------------------------------------------------------------- | 22 | - | 1 | |
| --------------------------------------------------------------------TTCCACATGTTCTAGGACTGT----------------------------- | 21 | - | 1 | |
| rat | tgtgatgttactatgtgatgttacttttgacagcccaagaatttgtttttttagcacatgtgactgatttccacatgttctaggactgttaTCCCCTGGAAGATCACAAGAGCTCAta | |||
| ********************************************************************************************************************** | ||||
| rat | (((((.(((.((.((((((.((.((..((((((.((.(((((.(((....((((((....)).)))).....))).))))).)).))))))......)))).)))))))))))))))) | 0.720 -31.50 | ||
| rat | chromosome:1:48345590:48345707:-1 | intergenic ## {Repeats: trf 1 21 0 class=trf} |
sblock6718 [novel_lenNOK_cloningOK_multiarm_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.39/0.70 | 18/23/0.67 | 0.0 0.0 1.9 | 0.0 0.0 2.8 | 1 1 16 | 0 0 0 | 1 1 4 | 0 0 0 | 29 32 5 | 3 -5 24 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.28 0.35 0.52 | 3 3 9 | 18 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------------------------------------------------CCCAACU------------------------ | 11 | novel | |||
| seed | ----------------------------------------------------------------------------------------CGCAGGA----------------- | 4 | novel | |||
| seed | ------------------------------------------------------------------------------CCUCCCA--------------------------- | 1 | novel | |||
| seed | ---------------------------------CCUUGCA------------------------------------------------------------------------ | 1 | novel | |||
| seed | ------------------------------UUUCCUU--------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T4S1 | T5S1 | T5S2 | |||
| --------------------------------------------------------------------------------TCCCAACTCGCAGGAGAGC------------- | 19 | 1 | 1 | 2 | - | |
| ---------------------------------------------------------------------------------------TCGCAGGAGAGCCCAGGGAG----- | 20 | - | - | 3 | 1 | |
| --------------------------------------------------------------------------------TCCCAACTCGCAGGAGAGCCCA---------- | 22 | - | - | 3 | - | |
| --------------------------------------------------------------------------------TCCCAACTCGCAGGAGAGCCCAG--------- | 23 | 1 | - | 1 | - | |
| --------------------------------------------------------------------------------TCCCAACTCGCAGGAGAGCC------------ | 20 | - | - | 1 | - | |
| -----------------------------TTTTCCTTGCACAAGTAG----------------------------------------------------------------- | 18 | - | - | 1 | - | |
| --------------------------------------------------------------------------------TCCCAACTCGCAGGAGAG-------------- | 18 | - | - | 1 | - | |
| -----------------------------------------------------------------------------TCCTCCCAACTCGCAGGAGAG-------------- | 21 | - | - | 1 | - | |
| --------------------------------TCCTTGCACAAGTAGCCCGAAGG--------------------------------------------------------- | 23 | - | - | 1 | - | |
| rat | ggggctgatgggaagagtgaggaggtaccTTTTCCTTGCACAAGTAGCCCGAAGGgctttgtctctgggaagctggaTCCTCCCAACTCGCAGGAGAGCCCAGGGAGcccca | |||||
| **************************************************************************************************************** | ||||||
| rat | ((((((..((((..((((..(((((..((.((((((...((((..(((((...)))))))))....))))))..))..)))))..)))).........))))...)))))). | 0.920 -50.10 | ||||
| rat | chromosome:20:5512304:5512415:-1 | intergenic |
novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_randfoldOK_bulgeHIGH (2 loci)
sblock3657 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.39/0.45 | 18/20/0.39 | 0.0 1.8 | 0.0 1.4 | 1 13 | 0 0 | 1 3 | 0 0 | 17 22 | 15 8 | 5arm 3arm | 1 1 | nd nd | 0.44 0.30 | 4 6 | 18 | 3 | -3 | -5 |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------------------------------------GCUUUCU--------------------------------- | 9 | novel | ||
| seed | -----------------------------------------------------------------CCCUGCU------------------------------------- | 8 | novel | ||
| seed | ------------------AGAAAGC------------------------------------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T3S2 | T5S1 | |||
| --------------------------------------------------------------------TGCTTTCTGAAATCTGGCT---------------------- | 19 | 1 | 1 | 7 | |
| ----------------------------------------------------------------TCCCTGCTTTCTGAAATCTG------------------------- | 20 | 1 | - | 6 | |
| ----------------------------------------------------------------TCCCTGCTTTCTGAAATC--------------------------- | 18 | - | - | 1 | |
| -----------------TAGAAAGCTACTGGGAAT-------------------------------------------------------------------------- | 18 | - | - | 1 | |
| rat | tgtttgcaaacttgggatagaaagctactgggaatggtagggagggcctcatcagaggggcccaTCCCTGCTTTCTGAAATCTGGCTaagtcccccccccaacacacac | ||||
| ************************************************************************************************************* | |||||
| rat | (((.((.......(((((....(((((...((((.(((((((((((((((......))))))).))))))))))))......)))))..)))))........)).))). | 0.910 -40.76 | |||
| rat | chromosome:12:44304781:44304889:1 | intergenic |
sblock707 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.50/0.63 | 19/26/0.48 | 2.2 0.0 0.0 1.5 3.7 | 0.0 0.4 0.0 1.0 2.7 | 8 5 6 2 6 | 0 0 0 0 0 | 3 3 1 1 3 | 0 0 0 0 0 | 13 25 34 44 3 | 15 8 1 -12 10 | 5arm 5arm 5arm 5arm_loop 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.55 0.55 0.26 0.65 0.18 | 7 7 3 11 4 | 27 | 6 | 8 | 12 |
| reads | miRBase family seed | |||||||
| seed | -----------------------------------CCACGGA------------------------------------------------------------------------- | 6 | novel | |||||
| seed | --------------------------GAAAUCA---------------------------------------------------------------------------------- | 5 | novel | |||||
| seed | --------------CCCUGCA---------------------------------------------------------------------------------------------- | 4 | novel | |||||
| seed | ------------------GCACCUC------------------------------------------------------------------------------------------ | 3 | novel | |||||
| seed | ---------------------------------------------------------------------------------------CCUUGGA--------------------- | 2 | novel | |||||
| seed | ----------------------------------------------------------------------------------------CUUGGAC-------------------- | 1 | novel | |||||
| seed | -------------------------------------------------------------------------------------GGCCUUG----------------------- | 1 | novel | |||||
| seed | ---------------------------------------------GCUCCAG--------------------------------------------------------------- | 1 | novel | |||||
| seed | ----------------------------------------------------------------------------------------------CAGAAUC-------------- | 1 | novel | |||||
| seed | ------------------------------------------------CCAGAUA------------------------------------------------------------ | 1 | novel | |||||
| seed | --------------------ACCUCUG---------------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | -------------------------------------------------------------------------------------------GGACAGA----------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T3S2 | T4S2 | T5S1 | |||
| ----------------------------------TCCACGGACCTGCTCCAGA-------------------------------------------------------------- | 19 | - | - | - | - | - | 6 | |
| -------------TCCCTGCACCTCTGAAATCACTCCAC---------------------------------------------------------------------------- | 26 | - | - | - | 1 | 1 | 2 | |
| -----------------TGCACCTCTGAAATCACTCCAC---------------------------------------------------------------------------- | 22 | - | - | - | - | - | 3 | |
| -------------------------TGAAATCACTCCACGGACCTG--------------------------------------------------------------------- | 21 | - | - | 1 | - | - | 2 | |
| -------------------------TGAAATCACTCCACGGACCT---------------------------------------------------------------------- | 20 | - | - | - | 1 | - | 1 | |
| -----------------------------------------------TCCAGATAACTACCCACCC------------------------------------------------- | 19 | 1 | - | - | - | - | - | |
| ------------------------------------------------------------------------------------TGGCCTTGGACAGAATCTGGT---------- | 21 | - | - | - | - | - | 1 | |
| --------------------------------------------------------------------------------------GCCTTGGACAGAATCTGGT---------- | 19 | - | - | - | - | - | 1 | |
| -------------------CACCTCTGAAATCACTCCAC---------------------------------------------------------------------------- | 20 | - | - | - | - | - | 1 | |
| --------------------------------------------------------------------------------------GCCTTGGACAGAATCTGGTG--------- | 20 | - | - | 1 | - | - | - | |
| ---------------------------------------------------------------------------------------------ACAGAATCTGGTGCTGGGT--- | 19 | - | - | - | - | - | 1 | |
| --------------------------------------------TGCTCCAGATAACTACCCAC--------------------------------------------------- | 20 | 1 | - | - | - | - | - | |
| ---------------------------------------------------------------------------------------CCTTGGACAGAATCTGGTG--------- | 19 | - | 1 | - | - | - | - | |
| ------------------------------------------------------------------------------------------TGGACAGAATCTGGTGCTGGGT--- | 22 | - | - | - | - | - | 1 | |
| rat | acttacccagtacTCCCTGCACCTCTGAAATCACTCCACGGACCTGCTCCAGAtaactacccaccccgctgcacgtctggatcctggccttggacagaatctggtgctgggtagg | |||||||
| ******************************************************************************************************************* | ||||||||
| rat | .(((((((((((((.........((((.......((((.((.((...(((((((....................)))))))....)))).))))))))....))))))))))))) | 0.630 -37.08 | ||||||
| rat | chromosome:1:128998779:128998893:-1 | intergenic |
novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH (2 loci)
sblock1677 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.642 | no | no | 0.25/0.42 | 18/26/0.40 | 4.0 0.0 1.5 0.0 0.0 | 1.0 0.0 0.5 0.0 1.0 | 2 2 2 1 3 | 0 0 0 0 0 | 2 1 1 1 1 | 0 0 0 0 0 | 4 17 40 24 16 | 15 11 -15 2 8 | 5arm 5arm 5arm_loop_3arm 3arm 3arm | 32 32 32 32 32 | nd nd nd nd nd | 0.42 0.37 0.42 0.32 0.43 | 4 4 4 2 4 | 10 | 2 | -3 | -2 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------CAAUUGG----------------------------- | 3 | novel | |
| seed | ------------------UUCAACC----------------------------------------------------------------------- | 2 | novel | |
| seed | -----AAAGCUC------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ------------------------------------------------------CAGACUC----------------------------------- | 1 | novel | |
| seed | -------------AAAAUUU---------------------------------------------------------------------------- | 1 | novel | |
| seed | --------------------------------------------AGAAUUG--------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------AUUAGAA------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -----------------------------------------------------------TCAATTGGAGAAGCAAGATGA---------------- | 21 | - | 2 | |
| -----------------TTTCAACCAGTTTCACGAT------------------------------------------------------------ | 19 | - | 2 | |
| -------------------------------------------TAGAATTGTCTCAGACTCA---------------------------------- | 19 | - | 1 | |
| -----------------------------------------------------------TCAATTGGAGAAGCAAGA------------------- | 18 | - | 1 | |
| ------------TAAAATTTCAACCAGTTTCA---------------------------------------------------------------- | 20 | 1 | - | |
| -----------------------------------------------------TCAGACTCAATTGGAGAAG------------------------ | 19 | - | 1 | |
| ----------------------------------------TATTAGAATTGTCTCAGACTC----------------------------------- | 21 | - | 1 | |
| ----TAAAGCTCTAAAATTTCAACCAGTTT------------------------------------------------------------------ | 26 | - | 1 | |
| rat | tttgTAAAGCTCTAAAATTTCAACCAGTTTCACGATaagtTATTAGAATTGTCTCAGACTCAATTGGAGAAGCAAGATGAtgttgggttggatgaa | |||
| ************************************************************************************************ | ||||
| ---------------------------------------------------------------------------------------------------------- | ENSRNOT00000059908 ENSRNOG00000030267 RGD1561185_predicted | |||
| rat | .((((..(((.((((....(((....(((((.((((.((((...(((....)))..))))..))))..)))))....)))..)))))))..)))). | 0.620 -14.60 | ||
| rat | chromosome:1:52817384:52817479:1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000059908|ENSRNOG00000030267 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000059909|ENSRNOG00000030267 ## ENSRNOG00000030267|protein_coding|RGD1561185_predicted| |
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