other hairpins
novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH (2 loci)
sblock10751 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.451 | no | no | 0.23/0.47 | 19/25/0.60 | 0.0 3.5 0.0 0.0 0.0 | 0.0 3.5 0.0 0.0 0.0 | 1 4 1 3 1 | 0 0 0 0 0 | 1 2 1 2 1 | 0 0 0 0 0 | 13 19 35 11 1 | 12 -4 -10 21 34 | 5arm 5arm_loop 5arm_loop 3arm 3arm | 5 10 11 11 11 | nd nd nd nd nd | 0.42 0.32 0.63 0.68 0.58 | 3 3 11 7 5 | 10 | 4 | 0 | 0 |
| reads | miRBase family seed | |||||
| seed | --------------------------------------------------------------------------------------ACAUAUU------------------------- | 3 | novel | |||
| seed | ---------------------------------------------------------------------------------------------------ACAUUUC------------ | 1 | novel | |||
| seed | --------------CCAGUUA------------------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | ---------------------CUUGACA------------------------------------------------------------------------------------------ | 1 | novel | |||
| seed | ------------------------------------CAUGAUU--------------------------------------------------------------------------- | 1 | novel | |||
| seed | --------------------ACUUGAC------------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | ------------------------GACAUGA--------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | -----------------------------GAAACUC---------------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S2 | T5S1 | |||
| -------------------------------------------------------------------------------------TACATATTAACTTCACATTTCA----------- | 22 | 1 | - | - | 2 | |
| -------------------TACTTGACATGAAACTCCATGA----------------------------------------------------------------------------- | 22 | - | - | - | 1 | |
| --------------------------------------------------------------------------------------------------CACATTTCATTACCTGGGA- | 19 | - | - | - | 1 | |
| -----------------------TGACATGAAACTCCATGATTCAAAG---------------------------------------------------------------------- | 25 | - | - | - | 1 | |
| ----------------------------TGAAACTCCATGATTCAAAG---------------------------------------------------------------------- | 20 | - | - | - | 1 | |
| -----------------------------------CCATGATTCAAAGCCTGTC---------------------------------------------------------------- | 19 | - | - | - | 1 | |
| -------------TCCAGTTACTTGACATGAA-------------------------------------------------------------------------------------- | 19 | - | - | 1 | - | |
| --------------------ACTTGACATGAAACTCCATGA----------------------------------------------------------------------------- | 21 | - | 1 | - | - | |
| rat | ttttttgggggatTCCAGTTACTTGACATGAAACTCCATGATTCAAAGCCTGTCcataatgttagaatctggagaagtcacagtcTACATATTAACTTCACATTTCATTACCTGGGAa | |||||
| ********************************************************************************************************************** | ||||||
| rat | .((((..((.((....(((((...(((.(((..(((((.(((((....................))))))))))...)))..))).......))))).......))....))..)))) | 0.470 -21.25 | ||||
| rat | chromosome:7:19397652:19397769:-1 | intergenic |
novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_nonpairedHIGH (2 loci)
sblock279 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.022 | no | no | 0.42/0.59 | 18/24/0.64 | 0.5 0.0 0.0 1.4 | 1.8 0.2 0.0 0.2 | 4 4 1 5 | 0 0 0 0 | 2 1 1 2 | 0 0 0 0 | 0 20 34 21 | 34 17 -2 4 | 5arm 5arm 3arm_loop 3arm | 44 44 51 51 | nd nd nd nd | 0.46 0.36 0.50 0.53 | 4 3 5 5 | 14 | 3 | -8 | -13 |
| reads | miRBase family seed | ||||
| seed | ---------------------CCAGUGU-------------------------------------------------------------------------------------- | 4 | miR-199a | ||
| seed | ---AGCAGGA-------------------------------------------------------------------------------------------------------- | 3 | novel | ||
| seed | ---------------------------------------------------------------------------GGACCUU-------------------------------- | 3 | novel | ||
| seed | --------------------------------------------------------------------------AGGACCU--------------------------------- | 1 | novel | ||
| seed | -GUAGCAG---------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------------------UCCAGUG-------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------------------------GUCAUAG-------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S1 | T5S1 | |||
| --------------------------------------------------------------------------AGGACCTTCTCACTAACAG--------------------- | 19 | - | - | 3 | |
| --------------------TCCAGTGTGGCTTCTGTCCCAGT----------------------------------------------------------------------- | 23 | - | - | 3 | |
| --TAGCAGGACATCCACTGTTCCAGT---------------------------------------------------------------------------------------- | 24 | - | - | 3 | |
| TGTAGCAGGACATCCACTG----------------------------------------------------------------------------------------------- | 19 | - | 1 | - | |
| --------------------TCCAGTGTGGCTTCTGTCCCAG------------------------------------------------------------------------ | 22 | - | - | 1 | |
| --------------------------------------------------------------------TGTCATAGGACCTTCTCACTAACA---------------------- | 24 | - | - | 1 | |
| --------------------------------------------------------------CTCCAGTGTCATAGGACC---------------------------------- | 18 | - | - | 1 | |
| -------------------------------------------------------------------------TAGGACCTTCTCACTAACAG--------------------- | 20 | 1 | - | - | |
| rat | TGTAGCAGGACATCCACTGTTCCAGTGTGGCTTCTGTCCCAGTacctccactatcactggacCTCCAGTGTCATAGGACCTTCTCACTAACAGcggctgcattgtcagggccct | ||||
| ****************************************************************************************************************** | |||||
| ---------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000041575 ENSRNOG00000031160 LOC685793 | ||||
| rat | ......(((....((.(((...(((((..(((.((((...((....(((.....((((((....)))))).....)))....)).....)))).)))..))))).))))).))) | 0.670 -35.60 | |||
| rat | chromosome:1:50282198:50282311:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000049496|ENSRNOG00000031160 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000041575|ENSRNOG00000031160 ## ENSRNOG00000031160|protein_coding|LOC685793| |
sblock10619 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.749 | no | no | 0.37/0.61 | 18/23/0.18 | 0.0 1.5 0.0 | 0.0 2.8 0.4 | 1 6 10 | 0 0 0 | 1 2 1 | 0 0 0 | 8 16 0 | 21 7 27 | 5arm 5arm 3arm | 16 16 18 | nd nd nd | 0.43 0.47 0.33 | 4 4 3 | 17 | 2 | 17 | 14 |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------------------------------------AGCAUGG----------- | 10 | novel | |
| seed | --------------------GCACACU---------------------------------------------------------------------------- | 3 | novel | |
| seed | -----------------------CACUCAG------------------------------------------------------------------------- | 2 | novel | |
| seed | ---------CCCCUGC--------------------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------GGAGCAC------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| ------------------------------------------------------------------------------------TAGCATGGTATAGTGAAG- | 18 | - | 6 | |
| ------------------------------------------------------------------------------------TAGCATGGTATAGTGAAGA | 19 | - | 4 | |
| -------------------AGCACACTCAGTATCTACA----------------------------------------------------------------- | 19 | - | 3 | |
| ----------------------ACACTCAGTATCTACATGGACCC---------------------------------------------------------- | 23 | - | 2 | |
| --------TCCCCTGCTGGAGCACACTCAGT------------------------------------------------------------------------ | 23 | - | 1 | |
| ----------------TGGAGCACACTCAGTATCT-------------------------------------------------------------------- | 19 | 1 | - | |
| rat | tcaggatgtcccctgctggAGCACACTCAGTATCTACATGGACCCactttggcattactaggtcctagaagaggctaattggtgTAGCATGGTATAGTGAAGA | |||
| ******************************************************************************************************* | ||||
| rat | (((...(((.((.((((...((((....(((.(((....(((((.....(((.....))))))))....))).))).....)))))))).)).))).)))... | 0.550 -23.40 | ||
| rat | chromosome:7:17359290:17359392:-1 | intergenic |
novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap_randfoldOK_bulgeHIGH (2 loci)
block203902 [novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.42/0.71 | 19/26/0.43 | 0.0 0.6 1.5 0.9 | 1.2 0.8 0.0 2.0 | 5 5 2 11 | 0 0 0 0 | 3 3 2 4 | 0 0 0 0 | 31 40 25 14 | -3 -10 -20 1 | 5arm_loop 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 1 | nd nd nd nd | 0.58 0.47 0.42 0.29 | 7 4 4 4 | 23 | 6 | 2 | 0 |
| reads | miRBase family seed | |||||||
| seed | -----------------------------------------------------------GCCACCA------------------------------ | 6 | novel | |||||
| seed | --------------------------------GAAGAUA--------------------------------------------------------- | 5 | novel | |||||
| seed | ---------------------------------------------------------GUGCCAC-------------------------------- | 5 | novel | |||||
| seed | ------------------------------------------GACUCAA----------------------------------------------- | 3 | novel | |||||
| seed | -----------------------------------------UGACUCA------------------------------------------------ | 2 | novel | |||||
| seed | -----------------------------------------------------AUCUGUG------------------------------------ | 1 | novel | |||||
| seed | --------------------------------------------------GACAUCU--------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S2 | T5S1 | |||
| ----------------------------------------------------------TGCCACCAGAAAGCCCTCG------------------- | 19 | - | - | - | 1 | - | 3 | |
| -----------------------------------------TGACTCAAGGACATCTGTG------------------------------------ | 19 | - | - | 1 | - | 1 | - | |
| --------------------------------------------------------TGTGCCACCAGAAAGCCCTCGGCCCC-------------- | 26 | - | 1 | - | - | - | 1 | |
| -------------------------------TGAAGATAGGTGACTCAAG---------------------------------------------- | 19 | 1 | - | - | - | - | 1 | |
| ----------------------------------------GTGACTCAAGGACATCTGT------------------------------------- | 19 | - | - | - | - | - | 2 | |
| -------------------------------TGAAGATAGGTGACTCAAGG--------------------------------------------- | 20 | - | - | - | - | 1 | 1 | |
| --------------------------------------------------------TGTGCCACCAGAAAGCCCTC-------------------- | 20 | - | - | - | - | - | 2 | |
| ----------------------------------------------------------TGCCACCAGAAAGCCCTCGGCCCC-------------- | 24 | 1 | - | - | - | - | 1 | |
| ----------------------------------------------------CATCTGTGCCACCAGAAAG------------------------- | 19 | - | - | - | - | - | 1 | |
| -------------------------------------------------GGACATCTGTGCCACCAGAAAG------------------------- | 22 | - | 1 | - | - | - | - | |
| -------------------------------TGAAGATAGGTGACTCAAGGACA------------------------------------------ | 23 | - | - | - | - | - | 1 | |
| --------------------------------------------------------TGTGCCACCAGAAAGCCCTCG------------------- | 21 | - | 1 | - | - | - | - | |
| -----------------------------------------TGACTCAAGGACATCTGTGC----------------------------------- | 20 | - | - | - | - | - | 1 | |
| rat | ggggaggggctgggggtggaggaggcggggcTGAAGATAGGTGACTCAAGGACATCTGTGCCACCAGAAAGCCCTCGGCCCCgcccccgccctcct | |||||||
| ************************************************************************************************ | ||||||||
| rat | .((((.((((.((((((((.((...(((((((.......((((...((.((....)).)).))))....))))).)).)))))))))))))))))) | 0.530 -50.40 | ||||||
| rat | chromosome:12:44288923:44289018:-1 | intergenic |
sblock714 [novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.35/0.50 | 19/25/0.24 | 0.0 0.0 | 0.0 0.0 | 1 20 | 0 0 | 1 5 | 0 0 | 3 16 | 10 -1 | 5arm 3arm | 1 1 | nd nd | 0.25 0.44 | 4 6 | 37 | 5 | -12 | -9 |
| reads | miRBase family seed | ||||||
| seed | -----------------------------------------CAGAUGU--------------------------------- | 27 | novel | ||||
| seed | -------------------------------------------------CCAAACA------------------------- | 8 | novel | ||||
| seed | ----UGGAGAA---------------------------------------------------------------------- | 1 | novel | ||||
| seed | -----------------------------------UGCUUUC--------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S1 | T2S2 | T5S1 | T5S2 | |||
| ----------------------------------------TCAGATGTTCCAAACAACAGAAAAG---------------- | 25 | 1 | 1 | 1 | 20 | - | |
| ------------------------------------------------TCCAAACAACAGAAAAGCC-------------- | 19 | - | - | - | 4 | - | |
| ------------------------------------------------TCCAAACAACAGAAAAGCCCATGT--------- | 24 | - | 1 | - | 3 | - | |
| ----------------------------------------TCAGATGTTCCAAACAACAGA-------------------- | 21 | - | - | - | 2 | 1 | |
| ----------------------------------TTGCTTTCAGATGTTCCAAACAA------------------------ | 23 | - | - | 1 | - | - | |
| ----------------------------------------TCAGATGTTCCAAACAACA---------------------- | 19 | - | - | - | 1 | - | |
| ---GTGGAGAACAGGTTCAGAGT---------------------------------------------------------- | 20 | - | - | - | 1 | - | |
| rat | agagtggagaacaggttcagagttggaacactgtttgcttTCAGATGTTCCAAACAACAGAAAAGcccatgttccccagtt | ||||||
| ********************************************************************************* | |||||||
| rat | .((.(((.((((((((((....(((((((((((........))).))))))))......)))....)).))))).))).)) | 1.000 -24.30 | |||||
| rat | chromosome:1:129000238:129000318:-1 | intergenic |
novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap_randfoldOK_nonpairedHIGH (2 loci)
sblock11427 [novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.50/0.68 | 18/22/0.50 | 0.0 0.4 0.0 | 0.0 0.6 0.0 | 1 14 1 | 0 0 0 | 1 7 1 | 0 0 0 | 27 36 25 | 11 -19 9 | 5arm 3arm 3arm | 1 1 1 | nd nd nd | 0.61 0.39 0.42 | 6 3 3 | 16 | 7 | 0 | 12 |
| reads | miRBase family seed | ||||||||
| seed | ----------------------------------------------------------CCGGCUA------------------------------------------------ | 12 | novel | ||||||
| seed | ----------------------------------------------------------------------UACCCGC------------------------------------ | 1 | novel | ||||||
| seed | ----------------------------CCGGUAA------------------------------------------------------------------------------ | 1 | novel | ||||||
| seed | ------------------------------------------------------------GGCUAUG---------------------------------------------- | 1 | novel | ||||||
| seed | ------------------------------------------------------CCGACCG---------------------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T5S1 | |||
| ---------------------------------------------------------ACCGGCTATGCAGTACCCGC------------------------------------ | 20 | - | - | 1 | 2 | 1 | 3 | - | |
| ---------------------------------------------------------ACCGGCTATGCAGTACCCG------------------------------------- | 19 | 1 | - | - | - | - | 1 | 1 | |
| ---------------------------------------------------------ACCGGCTATGCAGTACCC-------------------------------------- | 18 | - | - | 2 | - | - | - | - | |
| -----------------------------------------------------------CGGCTATGCAGTACCCGC------------------------------------ | 18 | - | 1 | - | - | - | - | - | |
| ---------------------------------------------------------------------GTACCCGCGAGCTGGAGTC------------------------- | 19 | - | - | - | - | 1 | - | - | |
| -----------------------------------------------------CCCGACCGGCTATGCAGTACCC-------------------------------------- | 22 | - | - | 1 | - | - | - | - | |
| ---------------------------CCCGGTAAACAAGCTCTA-------------------------------------------------------------------- | 18 | 1 | - | - | - | - | - | - | |
| rat | tgttgccccgcccccccactgccccagCCCGGTAAACAAGCTCTActactgcaCCCGACCGGCTATGCAGTACCCGCGAGCTGGAGTCaggcgattggggtgggtcgcaacac | ||||||||
| ***************************************************************************************************************** | |||||||||
| --------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000022631 ENSRNOG00000016875 Cbx7 | ||||||||
| rat | ((((((((((((((.....((((...(((((((......((.....(((((((.((....))...)))))))...))..))))).))..))))...))))))))..)))))). | 0.470 -45.70 | |||||||
| rat | chromosome:7:118160811:118160923:1 | Opposite_strand|Intronic_coding|ENSRNOT00000022631|ENSRNOG00000016875 ## ENSRNOG00000016875|protein_coding|Cbx7|chromobox homolog 7 Gene [Source:MGI (curated);Acc:Cbx7-001] |
sblock11679 [novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.32/0.47 | 19/25/0.07 | 0.0 0.0 0.0 | 0.0 0.0 3.0 | 1 10 3 | 0 0 0 | 1 2 1 | 0 0 0 | 4 24 0 | 3 -17 3 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.42 0.42 0.32 | 3 6 3 | 15 | 2 | 0 | 5 |
| reads | miRBase family seed | |||
| seed | -------------------------CACAAAA---------------------------- | 11 | novel | |
| seed | ------------------------------------CAAGUCU----------------- | 3 | novel | |
| seed | -----GCUGGAU------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ------------------------TCACAAAAGAATCAAGTCT----------------- | 19 | 1 | 10 | |
| -----------------------------------TCAAGTCTTCCAAGGAGAA------ | 19 | - | 1 | |
| -----------------------------------TCAAGTCTTCCAAGGAGAAAAATCA | 25 | - | 1 | |
| -----------------------------------TCAAGTCTTCCAAGGAGAAAAA--- | 22 | - | 1 | |
| ----TGCTGGATAGAGACGAAGA------------------------------------- | 19 | - | 1 | |
| rat | actctgctggatagagacgaagatTCACAAAAGAATCAAGTCTtccaaggagaaaaatca | |||
| ************************************************************ | ||||
| rat | .((((..((((...((((...(((((......)))))..)))))))).))))........ | 1.000 -18.10 | ||
| rat | chromosome:8:57734705:57734764:-1 | intergenic ## {Repeats: dust 57734705 57734712 0 class=dust} |
novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH (2 loci)
sblock10912 [novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.42/0.56 | 18/24/0.59 | 0.0 0.0 1.0 0.0 0.0 | 0.0 0.0 2.0 0.0 0.0 | 2 1 12 1 4 | 0 0 0 0 0 | 1 1 3 1 2 | 0 0 0 0 0 | 13 30 14 13 5 | 7 -8 -1 8 13 | 5arm 3arm_loop 3arm 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.45 0.50 0.42 0.47 0.45 | 5 7 4 6 6 | 29 | 5 | -7 | -8 |
| reads | miRBase family seed | ||||||
| seed | ------------------------------------------------GCCUAGA--------------------------------- | 10 | novel | ||||
| seed | ----------------------------------------------------AGACCAG----------------------------- | 6 | novel | ||||
| seed | --------------------------------------------------------------CAGAUGC------------------- | 5 | novel | ||||
| seed | --------------AGCAGAA------------------------------------------------------------------- | 2 | novel | ||||
| seed | ---------------------------------------------------------------AGAUGCC------------------ | 1 | novel | ||||
| seed | -----------------------------------------GCCUCAU---------------------------------------- | 1 | miR-421 | ||||
| seed | ---------------------------------------------------------AGAAUCA------------------------ | 1 | novel | ||||
| seed | ---------------------------------------------------UAGACCA------------------------------ | 1 | novel | ||||
| seed | -----------------------------------------------------GACCAGA---------------------------- | 1 | novel | ||||
| seed | ------------------------------------------------------ACCAGAA--------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S1 | T5S1 | T5S2 | |||
| -----------------------------------------------TGCCTAGACCAGAATCAGA---------------------- | 19 | 3 | - | - | 6 | - | |
| -------------------------------------------------------------TCAGATGCCTTCTAAAAGGGAG----- | 22 | - | - | - | 4 | - | |
| ---------------------------------------------------TAGACCAGAATCAGATGCCTTCT-------------- | 23 | - | - | - | 3 | - | |
| ---------------------------------------------------TAGACCAGAATCAGATGCCT----------------- | 20 | - | 1 | - | 1 | - | |
| -------------TAGCAGAAAAGGAGGCTGGT------------------------------------------------------- | 20 | - | - | - | 2 | - | |
| ----------------------------------------------------AGACCAGAATCAGATGCCTTCT-------------- | 22 | - | - | - | 1 | - | |
| --------------------------------------------------------CAGAATCAGATGCCTTCTA------------- | 19 | - | - | - | 1 | - | |
| ---------------------------------------------------TAGACCAGAATCAGATGCCTTC--------------- | 22 | - | - | - | 1 | - | |
| -----------------------------------------------TGCCTAGACCAGAATCAGATGCCT----------------- | 24 | - | - | - | 1 | - | |
| -----------------------------------------------------GACCAGAATCAGATGCCT----------------- | 18 | - | - | - | 1 | - | |
| --------------------------------------------------------------CAGATGCCTTCTAAAAGGGAGCAG-- | 24 | - | - | - | 1 | - | |
| ----------------------------------------TGCCTCATGCCTAGACCA------------------------------ | 18 | - | - | - | - | 1 | |
| -------------------------------------------------------------TCAGATGCCTTCTAAAAGGG------- | 20 | - | - | 1 | - | - | |
| --------------------------------------------------CTAGACCAGAATCAGATGCCTTC--------------- | 23 | 1 | - | - | - | - | |
| rat | acctggccaccttTAGCAGAAAAGGAGGCTGGTaaaaggctgcctcaTGCCTAGACCAGAATCAGATGCCTTCTAAAAGGGAGcaggt | ||||||
| **************************************************************************************** | |||||||
| rat | ((((.((..(((((((.((.....((..(((((...((((........))))..)))))..))......)).))))).))..)))))) | 0.980 -30.50 | |||||
| rat | chromosome:7:96053542:96053629:-1 | intergenic |
sblock2621 [novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.52/0.64 | 18/22/0.31 | 0.0 0.2 1.0 0.0 0.0 | 0.0 0.4 2.0 1.5 0.0 | 1 5 2 4 1 | 0 0 0 0 0 | 1 4 2 3 1 | 0 0 0 0 0 | 30 46 32 25 20 | 3 -13 -4 4 11 | 5arm 5arm_loop_3arm 3arm_loop 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.42 0.50 0.42 0.32 0.40 | 3 4 4 4 4 | 13 | 6 | 0 | 1 |
| reads | miRBase family seed | |||||||
| seed | -------------------------------------------------------------CCGGGCA--------------------------------------- | 4 | novel | |||||
| seed | -----------------------------------------------ACGCUGC----------------------------------------------------- | 4 | novel | |||||
| seed | -------------------------------AAAGCGA--------------------------------------------------------------------- | 1 | novel | |||||
| seed | ------------------------------------------------CGCUGCA---------------------------------------------------- | 1 | novel | |||||
| seed | -----------------------------------------------------CACAGUA----------------------------------------------- | 1 | novel | |||||
| seed | -------------------------------------------------------CAGUAAC--------------------------------------------- | 1 | novel | |||||
| seed | --------------------------------------------------------------------AGCCAAA-------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T5S1 | |||
| ----------------------------------------------AACGCTGCACAGTAACCG------------------------------------------- | 18 | 1 | - | - | 1 | - | 1 | |
| ------------------------------------------------------------ACCGGGCAAGCCAAAGCTC---------------------------- | 19 | - | 1 | - | - | 1 | - | |
| ------------------------------------------------------------ACCGGGCAAGCCAAAGCTCCCA------------------------- | 22 | - | - | 2 | - | - | - | |
| ----------------------------------------------AACGCTGCACAGTAACCGG------------------------------------------ | 19 | - | - | - | - | 1 | - | |
| -----------------------------------------------ACGCTGCACAGTAACCGG------------------------------------------ | 18 | - | - | - | 1 | - | - | |
| ----------------------------------------------------GCACAGTAACCGGGCAAGC------------------------------------ | 19 | - | 1 | - | - | - | - | |
| -------------------------------------------------------------------AAGCCAAAGCTCCCAACCCT-------------------- | 20 | - | - | - | - | 1 | - | |
| ------------------------------CAAAGCGAGTTTGCCCAAC---------------------------------------------------------- | 19 | 1 | - | - | - | - | - | |
| ------------------------------------------------------ACAGTAACCGGGCAAGCCAAA-------------------------------- | 21 | - | - | - | - | 1 | - | |
| rat | tccctccgccctgcacagcagagggaaaacCAAAGCGAGTTTGCCCAACGCTGCACAGTAACCGGGCAAGCCAAAGCTCCCAACCCTgacaagcagcaaggagagag | |||||||
| *********************************************************************************************************** | ||||||||
| rat | ((.((((...((((....(((.((((........((..((((((((...(((....)))....))))))))....))))))....)))....))))...)))).)). | 0.670 -34.80 | ||||||
| rat | chromosome:10:37131116:37131222:1 | intergenic |
novel_lenNOK_cloningOK_multiarm_DicerNOK_randfoldOK_nonpairedHIGH (2 loci)
sblock11655 [novel_lenNOK_cloningOK_multiarm_DicerNOK_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.35/0.58 | 19/25/0.18 | 0.0 0.0 0.0 3.8 0.0 | 0.0 0.0 0.0 3.4 0.0 | 1 29 1 5 1 | 0 0 0 0 0 | 1 3 1 3 1 | 0 0 0 0 0 | 7 32 38 38 24 | 31 6 -6 -18 13 | 5arm 5arm 5arm_loop_3arm 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.32 0.32 0.48 0.37 0.48 | 3 3 5 4 6 | 49 | 5 | 0 | 7 |
| reads | miRBase family seed | ||||||
| seed | ---------------------------------GACAAAG-------------------------------------------------------------------------------- | 40 | novel | ||||
| seed | ---------------------------------------------------AGCAAGG-------------------------------------------------------------- | 3 | novel | ||||
| seed | ----------------------------------ACAAAGG------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | ---------------------------------------GGAUUUG-------------------------------------------------------------------------- | 1 | novel | ||||
| seed | --------CCCUCUG--------------------------------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | --------------------------------------------------------------CUCAAGA--------------------------------------------------- | 1 | novel | ||||
| seed | -----------------------------------------------------------UCUCUCA------------------------------------------------------ | 1 | novel | ||||
| seed | ----------------------------------------------------------------------------CCUGAAA------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S1 | T3S2 | T4S2 | T5S1 | |||
| --------------------------------TGACAAAGGATTTGGTGTT--------------------------------------------------------------------- | 19 | 4 | - | - | 2 | 29 | |
| --------------------------------TGACAAAGGATTTGGTGTTAGCAA---------------------------------------------------------------- | 24 | - | - | - | - | 3 | |
| --------------------------------------------------TAGCAAGGTTCTCTCAAGAGCACCC--------------------------------------------- | 25 | - | - | - | - | 2 | |
| --------------------------------------AGGATTTGGTGTTAGCAAGGTTCTC--------------------------------------------------------- | 25 | - | - | - | - | 1 | |
| --------------------------------TGACAAAGGATTTGGTGTTA-------------------------------------------------------------------- | 20 | - | - | - | - | 1 | |
| ----------------------------------------------------------TTCTCTCAAGAGCACCCTCCTGAA-------------------------------------- | 24 | - | 1 | - | - | - | |
| ---------------------------------------------------------------------------TCCTGAAACGGTTTCTGGGTG------------------------ | 21 | - | - | - | - | 1 | |
| ---------------------------------GACAAAGGATTTGGTGTTAG------------------------------------------------------------------- | 20 | - | - | - | - | 1 | |
| -------------------------------------------------------------TCTCAAGAGCACCCTCCTG---------------------------------------- | 19 | - | - | 1 | - | - | |
| -------TCCCTCTGGACCCTTCAAA---------------------------------------------------------------------------------------------- | 19 | - | - | 1 | - | - | |
| --------------------------------TGACAAAGGATTTGGTGTTAG------------------------------------------------------------------- | 21 | - | - | - | - | 1 | |
| --------------------------------------------------TAGCAAGGTTCTCTCAAGAG-------------------------------------------------- | 20 | - | - | - | - | 1 | |
| rat | gccctcatccctctggacccttcaaatgccccTGACAAAGGATTTGGTGTTagcaaggttctctcaagagcaccctcctgaaacggtttctgggtggcagaaggctggcgggagagggca | ||||||
| ************************************************************************************************************************ | |||||||
| rat | ((((((.((((.((((..(((((...((((((((((..((((...((((((....((.....))....)))))).))))......)))...))).))))))))))))).)))))))))). | 0.860 -50.00 | |||||
| rat | chromosome:8:57726447:57726566:-1 | intergenic |
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