other hairpins
novel_lenNOK_cloningOK_multiarm_DicerNOK_randfoldOK_nonpairedHIGH (2 loci)
sblock9178 [novel_lenNOK_cloningOK_multiarm_DicerNOK_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.37/0.53 | 19/21/0.59 | 0.0 0.8 0.0 1.0 | 0.0 1.1 0.0 0.4 | 1 13 1 5 | 0 0 0 0 | 1 3 1 3 | 0 0 0 0 | 0 22 8 0 | 27 4 23 28 | 5arm 3arm 3arm 3arm | 6 6 6 6 | nd nd nd nd | 0.32 0.45 0.37 0.50 | 3 4 3 9 | 22 | 5 | -17 | -15 |
| reads | miRBase family seed | ||||||
| seed | -----------------------------------------------------------AAACACC---------------------------------- | 8 | novel | ||||
| seed | ----------------------------------------------------------UAAACAC----------------------------------- | 3 | novel | ||||
| seed | ----------------------------------------------------------------------------------GGCAUUU----------- | 3 | novel | ||||
| seed | -------------------------------------------------------CCUUAAA-------------------------------------- | 2 | novel | ||||
| seed | -----------------------------------------------------------------CAUCUCU---------------------------- | 1 | novel | ||||
| seed | --------------------------------------------------------------------------UCCAUCC------------------- | 1 | novel | ||||
| seed | ---------------------------------------------------------------ACCAUCU------------------------------ | 1 | novel | ||||
| seed | --------------------------------------------------------------------------------CUGGCAU------------- | 1 | novel | ||||
| seed | -------------------------------------------------------------------------------CCUGGCA-------------- | 1 | novel | ||||
| seed | -GAAACGC-------------------------------------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S1 | T5S1 | T5S2 | |||
| ----------------------------------------------------------TAAACACCATCTCTGTTCCA---------------------- | 20 | 3 | - | - | 5 | - | |
| ---------------------------------------------------------TTAAACACCATCTCTGTTC------------------------ | 19 | - | - | - | 3 | - | |
| ---------------------------------------------------------------------------------TGGCATTTCCTTTTTTGAC | 19 | - | - | - | 2 | 1 | |
| ------------------------------------------------------TCCTTAAACACCATCTCTGT-------------------------- | 20 | - | - | - | 2 | - | |
| -------------------------------------------------------------------------TTCCATCCTGGCATTTCCT-------- | 19 | 1 | - | - | - | - | |
| -------------------------------------------------------------------------------CCTGGCATTTCCTTTTTTGAC | 21 | - | - | 1 | - | - | |
| --------------------------------------------------------------CACCATCTCTGTTCCATCCTG----------------- | 21 | - | - | - | 1 | - | |
| ----------------------------------------------------------------CCATCTCTGTTCCATCCTG----------------- | 19 | - | 1 | - | - | - | |
| TGAAACGCTAGGTCTTGAT--------------------------------------------------------------------------------- | 19 | - | - | - | 1 | - | |
| ------------------------------------------------------------------------------TCCTGGCATTTCCTTTTTTG-- | 20 | - | - | - | 1 | - | |
| rat | tgaaacgctaggtcttgatgctcctgaggggtcttcttcagagccttgccaggcTCCTTAAACACCATCTCTGTTCCAtccTGGCATTTCCTTTTTTGAC | ||||||
| **************************************************************************************************** | |||||||
| rat | .((((.((((((...((..((....(((((((........((((((....)))))).......))).)))).))..)).)))))).)))).......... | 0.970 -28.96 | |||||
| rat | chromosome:4:164707868:164707967:1 | intergenic |
novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_nonpairedHIGH_bulgeHIGH (2 loci)
sblock697 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.763 | no | no | 0.36/0.58 | 18/23/0.56 | 0.0 0.3 | 0.0 2.2 | 1 11 | 0 0 | 1 4 | 0 0 | 11 1 | 3 12 | 5arm 3arm | 1 1 | nd nd | 0.42 0.41 | 6 4 | 16 | 4 | 0 | 4 |
| reads | miRBase family seed | |||||
| seed | ----------------------------------------------------AGCUGAA---------------- | 11 | novel | |||
| seed | -----------------------------------------------------GCUGAAA--------------- | 4 | novel | |||
| seed | ------------GUCAGGC-------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T2S2 | T4S2 | T5S1 | |||
| ---------------------------------------------------TAGCTGAAATGAATGTGCA----- | 19 | - | - | - | 5 | |
| ---------------------------------------------------TAGCTGAAATGAATGTGCATGAG- | 23 | - | - | 1 | 3 | |
| ----------------------------------------------------AGCTGAAATGAATGTGCATGAG- | 22 | - | 3 | - | - | |
| -----------GGTCAGGCAAGGTAAAGGG--------------------------------------------- | 19 | - | - | - | 1 | |
| ---------------------------------------------------TAGCTGAAATGAATGTGCATGA-- | 22 | - | - | - | 1 | |
| ----------------------------------------------------AGCTGAAATGAATGTGCATGA-- | 21 | 1 | - | - | - | |
| ---------------------------------------------------TAGCTGAAATGAATGTGC------ | 18 | - | - | - | 1 | |
| rat | ctctttgtgatggtcaggcaaggtaaaggggcatttggttgtagcacaaccTAGCTGAAATGAATGTGCATGAGc | |||||
| *************************************************************************** | ||||||
| rat | (((..((((....((((((.((((......(((......)))......)))).)))....)))...)))).))). | 0.650 -14.50 | ||||
| rat | chromosome:1:128259422:128259496:-1 | intergenic |
sblock7160 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.162 | no | no | 0.52/0.61 | 18/23/0.38 | 0.8 0.0 0.0 | 0.0 0.0 0.0 | 8 1 2 | 0 0 0 | 3 1 2 | 0 0 0 | 0 13 7 | 17 3 4 | 5arm 5arm 3arm | 1 1 1 | nd nd nd | 0.41 0.52 0.39 | 3 9 4 | 16 | 4 | -4 | -7 |
| reads | miRBase family seed | |||||
| seed | ----CUGAUUC------------------------------------------------------------- | 7 | novel | |||
| seed | -CCUCUGA---------------------------------------------------------------- | 4 | novel | |||
| seed | ------------------------------------------------UGGCUCU----------------- | 2 | novel | |||
| seed | ---------UCCCUCG-------------------------------------------------------- | 1 | novel | |||
| seed | --------------CGGUUGA--------------------------------------------------- | 1 | novel | |||
| seed | ------GAUUCCC----------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T3S2 | T5S1 | |||
| ---TCTGATTCCCTCGGTTGAG-------------------------------------------------- | 19 | - | - | - | 6 | |
| TCCTCTGATTCCCTCGGTTGAG-------------------------------------------------- | 22 | - | - | - | 2 | |
| -----------------------------------------------TTGGCTCTCCTCTTTGGG------- | 18 | - | 1 | - | 1 | |
| ---TCTGATTCCCTCGGTTGAGC------------------------------------------------- | 20 | - | - | - | 1 | |
| -----TGATTCCCTCGGTTGAGCC------------------------------------------------ | 19 | - | - | - | 1 | |
| --------TTCCCTCGGTTGAGCCCT---------------------------------------------- | 18 | 1 | - | - | - | |
| TCCTCTGATTCCCTCGGTTGA--------------------------------------------------- | 21 | 1 | - | - | - | |
| -------------TCGGTTGAGCCCTAAAATGCAGG------------------------------------ | 23 | - | - | - | 1 | |
| TCCTCTGATTCCCTCGGTTG---------------------------------------------------- | 20 | - | - | 1 | - | |
| rat | TCCTCTGATTCCCTCGGTTGAGccctaaaatgcaggcctggtggggcttggctctcctctttgggttctgga | |||||
| ************************************************************************ | ||||||
| rat | (((...((..(((..((..(((((.........((((((....)))))))))))....))..))).)).))) | 0.930 -22.30 | ||||
| rat | chromosome:20:5546315:5546386:1 | intergenic |
novel_lenNOK_cloningOK_multiarm_DicerOK_5varHIGH_bulgeHIGH (2 loci)
sblock1337 [novel_lenNOK_cloningOK_multiarm_DicerOK_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.567 | no | no | 0.43/0.60 | 19/23/0.20 | 0.0 0.0 1.3 0.0 | 0.0 0.0 1.3 0.0 | 1 1 9 1 | 0 0 0 0 | 1 1 3 1 | 0 0 0 0 | 13 19 7 0 | 1 -7 2 12 | 5arm 5arm_loop_3arm 3arm 3arm | 2 3 3 3 | nd nd nd nd | 0.33 0.48 0.42 0.26 | 3 4 3 5 | 15 | 3 | 1 | 2 |
| reads | miRBase family seed | ||||
| seed | ------------------------------------------AUGCAGC---------------------- | 6 | novel | ||
| seed | --------------------------------------------GCAGCCA-------------------- | 4 | novel | ||
| seed | ----------------------------------------------AGCCAUG------------------ | 2 | novel | ||
| seed | --------------AACUGGA-------------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------GCCGGUG------------ | 1 | novel | ||
| seed | --------------------ACAAACU-------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T4S2 | T5S1 | |||
| -----------------------------------------TATGCAGCCATGCCGGTGA----------- | 19 | 1 | - | 5 | |
| -------------------------------------------TGCAGCCATGCCGGTGAAT--------- | 19 | 1 | 1 | 2 | |
| ---------------------------------------------CAGCCATGCCGGTGAATAG------- | 19 | - | - | 2 | |
| -------------TAACTGGACAAACTTGCTGAG------------------------------------- | 21 | - | - | 1 | |
| ---------------------------------------------------TGCCGGTGAATAGCTTCCCC | 20 | - | - | 1 | |
| -------------------GACAAACTTGCTGAGCCTGGGTT----------------------------- | 23 | - | - | 1 | |
| rat | gggaatggggccctaactggacaaacttgctgagcctgggtTATGCAGCCATGCCGGTGAATAGcttcccc | ||||
| *********************************************************************** | |||||
| rat | (((...(((((....(((((.((...((((..(((....)))..))))...))))))).....)))))))) | 0.920 -20.30 | |||
| rat | chromosome:1:47968499:47968569:1 | intergenic |
sblock6838 [novel_lenNOK_cloningOK_multiarm_DicerOK_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.088 | no | no | 0.32/0.52 | 19/25/0.43 | 5.5 0.0 0.0 2.5 0.0 | 4.2 0.0 0.0 0.8 0.0 | 6 1 2 4 1 | 0 0 0 0 0 | 2 1 1 1 1 | 0 0 0 0 0 | 21 51 33 22 6 | 2 -17 3 7 26 | 5arm 5arm_loop_3arm 3arm 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.37 0.43 0.53 0.32 0.30 | 3 6 6 6 4 | 14 | 2 | 3 | 2 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------------GUACAGA-------------------------------------------- | 2 | novel | |
| seed | -----------------------------------AGGUUCG-------------------------------------------------------------------------- | 2 | novel | |
| seed | ----------------------------------------------------------------------GAUUAAC--------------------------------------- | 1 | novel | |
| seed | ----------------------------------------------------GCAAGUA--------------------------------------------------------- | 1 | novel | |
| seed | ----------------------GACUCUA--------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------------------------------AGAUUAA---------------------------------------- | 1 | novel | |
| seed | -----------------------ACUCUAG-------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------UAGGUUC--------------------------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------------------------------------------------------------GAGCAAG--------------------- | 1 | novel | |
| seed | ----------------------------AGCGAUU--------------------------------------------------------------------------------- | 1 | novel | |
| seed | --------------------------------------------------------------------------AACCGUA----------------------------------- | 1 | novel | |
| seed | -------------------------------------------------------------------------UAACCGU------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| ----------------------------------------------------------------TGTACAGATTAACCGTATT--------------------------------- | 19 | 2 | - | |
| ----------------------------------TAGGTTCGTCGAGACATTG--------------------------------------------------------------- | 19 | 2 | - | |
| ------------------------------------------------------------------------TTAACCGTATTAGTAGGAG------------------------- | 19 | 1 | - | |
| ----------------------GACTCTAGCGATTAGGTTCGTC------------------------------------------------------------------------ | 22 | 1 | - | |
| ---------------------------TAGCGATTAGGTTCGTCGAGACA------------------------------------------------------------------ | 23 | - | 1 | |
| --------------------------------------------------------------------CAGATTAACCGTATTAGTAGGAGC------------------------ | 24 | 1 | - | |
| ---------------------------------------------------------------------AGATTAACCGTATTAGTAGGAGCAA---------------------- | 25 | 1 | - | |
| ---------------------TGACTCTAGCGATTAGGTTC--------------------------------------------------------------------------- | 20 | 1 | - | |
| ---------------------------------TTAGGTTCGTCGAGACATT---------------------------------------------------------------- | 19 | 1 | - | |
| ---------------------------------------------------------------------------------------GGAGCAAGTTCAGGTCTGAGAGA------ | 23 | 1 | - | |
| -------------------------------------------------------------------------TAACCGTATTAGTAGGAGC------------------------ | 19 | 1 | - | |
| ---------------------------------------------------TGCAAGTAGATGCTGTACAGA-------------------------------------------- | 21 | 1 | - | |
| rat | ataagctaggtagtgaggactTGACTCTAGCGATTAGGTTCGTCGAGACATTGCAAGTAGATGCTGTACAGATTAACCGTATTAGTAGGAGCAAGTTCAGGTCTGAGAGAtttgta | |||
| ******************************************************************************************************************** | ||||
| rat | (((((((...(((...(((((((.((((.((.....((((.(((...(((..(((......))))))...))).))))......)).)))))))))))....)))..)).))))). | 0.830 -30.10 | ||
| rat | chromosome:20:13191681:13191796:-1 | intergenic |
novel_lenNOK_cloningOK_multiarm_DicerOK_loopOverlap_nonpairedHIGH (2 loci)
sblock3442 [novel_lenNOK_cloningOK_multiarm_DicerOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.192 | no | no | 0.42/0.60 | 18/22/0.14 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 1 17 1 1 | 0 0 0 0 | 1 2 1 1 | 0 0 0 0 | 4 20 9 2 | 0 -15 -4 2 | 5arm 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 1 | nd nd nd nd | 0.35 0.53 0.48 0.45 | 2 4 3 3 | 22 | 2 | 2 | 2 |
| reads | miRBase family seed | |||
| seed | ---------------------GGUAGAC-------------------------- | 19 | miR-379 | |
| seed | -------------------------------GACUUAC---------------- | 1 | novel | |
| seed | -------------------------GACACUG---------------------- | 1 | novel | |
| seed | -----CACUCAG------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| --------------------TGGTAGACACTGACTTACT--------------- | 19 | 1 | 17 | |
| ------------------------AGACACTGACTTACTTGCCTG--------- | 21 | - | 1 | |
| --------------------TGGTAGACACTGACTTAC---------------- | 18 | - | 1 | |
| ----TCACTCAGGAGGGGGTTGGT------------------------------ | 20 | - | 1 | |
| ------------------------------TGACTTACTTGCCTGGCTGACC-- | 22 | - | 1 | |
| rat | gacttcactcaggagggggtTGGTAGACACTGACTTACTtgcctggctgacctc | |||
| ****************************************************** | ||||
| rat | ....(((..((((((..(((..((....))..)))..))..))))..))).... | 1.000 -16.50 | ||
| rat | chromosome:12:5630000:5630053:1 | intergenic |
sblock9269 [novel_lenNOK_cloningOK_multiarm_DicerOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.150 | no | no | 0.35/0.58 | 19/26/0.32 | 1.0 0.0 0.0 0.0 | 3.0 0.0 2.1 0.0 | 5 8 11 1 | 0 0 0 0 | 3 2 1 1 | 0 0 0 0 | 6 25 36 31 | 14 0 -18 2 | 5arm 5arm_loop_3arm 5arm_loop_3arm 3arm | 3 3 3 3 | nd nd nd nd | 0.32 0.37 0.36 0.42 | 3 2 4 4 | 28 | 3 | 2 | 2 |
| reads | miRBase family seed | ||||
| seed | -------------------------------------GUAACUU-------------------------------------------------------- | 12 | novel | ||
| seed | --------------------------CGCAUAG------------------------------------------------------------------- | 9 | novel | ||
| seed | -------CCCUCUC-------------------------------------------------------------------------------------- | 3 | novel | ||
| seed | ---------CUCUCUG------------------------------------------------------------------------------------ | 1 | novel | ||
| seed | ----------UCUCUGU----------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------UCCAUGG------------------------------------------ | 1 | novel | ||
| seed | ---------------------------GCAUAGC------------------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| -------------------------TCGCATAGCCATGTAACTT-------------------------------------------------------- | 19 | - | 1 | 8 | |
| ------------------------------------TGTAACTTAAAGGAGTCCATGG------------------------------------------ | 22 | - | - | 4 | |
| ------------------------------------TGTAACTTAAAGGAGTCCATGGAGG--------------------------------------- | 25 | - | - | 3 | |
| ------------------------------------TGTAACTTAAAGGAGTCCATGGAGGA-------------------------------------- | 26 | - | - | 2 | |
| ------------------------------------TGTAACTTAAAGGAGTCCA--------------------------------------------- | 19 | - | - | 2 | |
| ------------------------------------TGTAACTTAAAGGAGTCCAT-------------------------------------------- | 20 | - | - | 1 | |
| --------------------------CGCATAGCCATGTAACTTAAAGGA-------------------------------------------------- | 24 | - | - | 1 | |
| ------TCCCTCTCTGTTCTTGGCATCGCA---------------------------------------------------------------------- | 24 | - | 1 | - | |
| --------CCTCTCTGTTCTTGGCATCGCA---------------------------------------------------------------------- | 22 | 1 | - | - | |
| --------------------------------------------------GTCCATGGAGGATGAAGGG------------------------------- | 19 | - | - | 1 | |
| ------TCCCTCTCTGTTCTTGGCA--------------------------------------------------------------------------- | 19 | - | - | 1 | |
| ------TCCCTCTCTGTTCTTGGCATC------------------------------------------------------------------------- | 21 | - | - | 1 | |
| ---------CTCTCTGTTCTTGGCATCG------------------------------------------------------------------------ | 19 | - | - | 1 | |
| rat | ggagtatccctctctgttcttggcaTCGCATAGCCATGTAACTTAAAGGAGTCCATGGAGGatgaagggcctcaacaccaaatcccgaagggagacttta | ||||
| **************************************************************************************************** | |||||
| rat | (((((.(((((.((((((...(((....(((..(((((..((((....)))).)))))...)))....)))..)))).........))))))).))))). | 0.900 -27.70 | |||
| rat | chromosome:5:25425613:25425712:-1 | intergenic |
novel_lenNOK_cloningOK_multiarm_Multihit_loopOverlap_nonpairedHIGH (2 loci)
block2246300 [novel_lenNOK_cloningOK_multiarm_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 1.000 | no | no | 0.61/0.68 | 18/22/0.31 | 0.0 0.0 | 2.1 0.0 | 27 2 | 0 0 | 4 1 | 0 0 | 38 45 | -7 -10 | 5arm_loop_3arm 5arm_loop_3arm | 11 11 | nd nd | 0.45 0.56 | 3 3 | 29 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ---------------------------------------------------------------------------------------CCUGAGA--------------- | 9 | novel | ||||
| seed | ---------------------------------------CCUGAGA--------------------------------------------------------------- | 9 | novel | ||||
| seed | ---------------------------------------------------------------CCUGAGA--------------------------------------- | 9 | novel | ||||
| seed | ----------------------------------------------CCCUGAG-------------------------------------------------------- | 1 | miR-125a/125b/351 | ||||
| seed | ----------------------------------------------------------------------CCCUGAG-------------------------------- | 1 | miR-125a/125b/351 | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T5S2 | |||
| --------------------------------------CCCTGAGACCCTGAGACCC---------------------------------------------------- | 19 | 1 | 1 | - | 1 | 2 | |
| --------------------------------------------------------------CCCTGAGACCCTGAGACCC---------------------------- | 19 | 1 | 1 | - | 1 | 2 | |
| --------------------------------------------------------------------------------------CCCTGAGACCCTGAGACCC---- | 19 | 1 | 1 | - | 1 | 2 | |
| --------------------------------------------------------------CCCTGAGACCCTGAGACCCTGA------------------------- | 22 | - | 3 | - | - | - | |
| --------------------------------------CCCTGAGACCCTGAGACCCTGA------------------------------------------------- | 22 | - | 3 | - | - | - | |
| --------------------------------------------------------------------------------------CCCTGAGACCCTGAGACCCTGA- | 22 | - | 3 | - | - | - | |
| --------------------------------------------------------------CCCTGAGACCCTGAGACC----------------------------- | 18 | 1 | - | - | - | - | |
| --------------------------------------CCCTGAGACCCTGAGACC----------------------------------------------------- | 18 | 1 | - | - | - | - | |
| ---------------------------------------------ACCCTGAGACCCTGAGAC---------------------------------------------- | 18 | - | - | 1 | - | - | |
| ---------------------------------------------------------------------ACCCTGAGACCCTGAGAC---------------------- | 18 | - | - | 1 | - | - | |
| --------------------------------------------------------------------------------------CCCTGAGACCCTGAGACC----- | 18 | 1 | - | - | - | - | |
| rat | ctgagcccctgagaccctgagatcctgagcccctgagcCCCTGAGACCCTGAGACCCTGAGACCCTGAGACCCTGAGACCCTGAGACCCTGAGACCCTGAGACCCTGAg | ||||||
| ************************************************************************************************************* | |||||||
| rat | ((.((...((.((...((.((...((.((...((.((...((.((...((.((...)).))...)).))...)).))...)).))...)).))...)).))...)).)) | 0.630 -14.50 | |||||
| rat | chromosome:7:110131166:110131274:1 | intergenic ## {Repeats: trf 2 77 0 class=trf,dust 110131161 110131236 0 class=dust} |
block2516178 [novel_lenNOK_cloningOK_multiarm_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.949 | no | no | 0.61/0.68 | 18/22/0.27 | 0.1 0.0 | 2.4 0.0 | 10 1 | 0 0 | 5 1 | 0 0 | 30 23 | -15 -2 | 5arm_loop_3arm 3arm_loop | 11 11 | nd nd | 0.45 0.37 | 3 3 | 11 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | --------------------------------CCUGAGA------------------------------------------ | 9 | novel | |||||
| seed | ----------------------------------------CCUGAGA---------------------------------- | 1 | novel | |||||
| seed | -------------------------------CCCUGAG------------------------------------------- | 1 | miR-125a/125b/351 | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T4S1 | T5S2 | |||
| -------------------------------CCCTGAGACCCTGAGACCC------------------------------- | 19 | 1 | 1 | - | 1 | - | 2 | |
| -------------------------------CCCTGAGACCCTGAGACCCTGA---------------------------- | 22 | - | 3 | - | - | - | - | |
| ---------------------------------------CCCTGAGACCCTGAGACCA----------------------- | 19 | - | - | - | - | 1 | - | |
| -------------------------------CCCTGAGACCCTGAGACC-------------------------------- | 18 | 1 | - | - | - | - | - | |
| ------------------------------ACCCTGAGACCCTGAGAC--------------------------------- | 18 | - | - | 1 | - | - | - | |
| rat | gctgcttgtataggagatgttgggactgagACCCTGAGACCCTGAGACCCTGAGACCAaggctctgatgtggaggagaggt | |||||||
| ********************************************************************************* | ||||||||
| rat | (((.(((.((((((((...((((..((.((...((.((...)).))...)).)).))))..))))..)))).)))...))) | 0.600 -17.10 | ||||||
| rat | chromosome:9:63617924:63618004:-1 | intergenic ## {Repeats: trf 1 28 0 class=trf} |
novel_lenNOK_cloningOK_multiarm_bulgeHIGH (2 loci)
block1767110 [novel_lenNOK_cloningOK_multiarm_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.340 | no | no | 0.26/0.35 | 19/20/0.08 | 0.0 0.0 | 0.0 0.0 | 1 9 | 0 0 | 1 2 | 0 0 | 44 22 | -19 3 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.40 0.21 | 4 4 | 12 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------UCUAAAU--------------------------------- | 10 | novel | |
| seed | -------------------------------------------------------UAAAUGA------------------------------- | 1 | novel | |
| seed | ---------------------------------------------GGUUGCU----------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| ----------------------------------------------------TTCTAAATGATGGATAACA---------------------- | 19 | 1 | 9 | |
| --------------------------------------------TGGTTGCTTTCTAAATGATG----------------------------- | 20 | - | 1 | |
| ------------------------------------------------------CTAAATGATGGATAACATA-------------------- | 19 | - | 1 | |
| rat | attgctcttctcataggaatgttgttttttaaatcaagtgagagtggttgctTTCTAAATGATGGATAACAtatcaaggtaagaccctgtagt | |||
| ********************************************************************************************* | ||||
| rat | (((((...(((.((..(((((((((((.....((((...((((((....))))))....))))))))))))).))...)).)))....))))) | 0.630 -17.60 | ||
| rat | chromosome:5:114558489:114558581:-1 | intergenic |
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