other hairpins
novel_lenNOK_cloningOK_multiarm_bulgeHIGH (2 loci)
sblock8500 [novel_lenNOK_cloningOK_multiarm_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.094 | no | no | 0.36/0.38 | 19/24/0.20 | 0.0 0.7 2.0 | 0.0 0.7 1.0 | 1 9 2 | 0 0 0 | 1 4 2 | 0 0 0 | 15 11 0 | -4 17 23 | 5arm_loop_3arm 3arm 3arm | 1 1 1 | nd nd nd | 0.24 0.42 0.48 | 4 6 5 | 15 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ------------------------------------------------------UUGCAUU------------------------ | 9 | novel | ||||
| seed | --------------------------------------------------------GCAUUCC---------------------- | 3 | novel | ||||
| seed | ----------------------------------------------------------------CACAAGU-------------- | 1 | novel | ||||
| seed | ------------------------------------------------------------UCCUCAC------------------ | 1 | novel | ||||
| seed | ----------------AAUGCUG-------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------------------------------TTTGCATTCCTCACAAGTT------------- | 19 | 1 | 1 | - | 6 | 1 | |
| -------------------------------------------------------TGCATTCCTCACAAGTTTT----------- | 19 | - | - | - | 3 | - | |
| -----------------------------------------------------------TTCCTCACAAGTTTTATACCCACA-- | 24 | - | - | 1 | - | - | |
| ---------------------------------------------------------------TCACAAGTTTTATACCCACACA | 22 | - | - | - | 1 | - | |
| ---------------TAATGCTGACTTCACTACTGA------------------------------------------------- | 21 | - | - | - | 1 | - | |
| rat | gggtaagggatttcataatgctgacttcactactgatagttgaggcatacttaTTTGCATTCCTCACAAGTTTTatacccacaca | ||||||
| ************************************************************************************* | |||||||
| ----------------------------------------------------------------------------------------------- | ENSRNOT00000057549 ENSRNOG00000037878 | ||||||
| rat | (((((..((((((...(((((((.((((((((....)))).)))))).........)))))......))))))..)))))..... | 0.700 -17.60 | |||||
| rat | chromosome:4:119335488:119335572:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000057549|ENSRNOG00000037878 ## ENSRNOG00000037878|protein_coding|| |
novel_lenNOK_cloningOK_multiarm_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH (2 loci)
block153513 [novel_lenNOK_cloningOK_multiarm_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.44/0.61 | 18/21/0.33 | 0.0 0.0 | 1.2 0.0 | 20 1 | 0 0 | 7 1 | 0 0 | 27 15 | -19 0 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.43 0.44 | 5 4 | 21 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | ----------------------------AAAGGUU-------------------------------- | 20 | novel | ||||||
| seed | -----------------------------------AAAAGGG------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T3S2 | T4S1 | T4S2 | |||
| ---------------------------TAAAGGTTAAAAGGGGGG---------------------- | 18 | 3 | - | 2 | - | - | 1 | 3 | |
| ---------------------------TAAAGGTTAAAAGGGGGGGGG------------------- | 21 | 3 | 1 | - | - | 1 | - | 1 | |
| ---------------------------TAAAGGTTAAAAGGGGGGG--------------------- | 19 | 2 | - | 1 | 1 | - | - | - | |
| ---------------------------TAAAGGTTAAAAGGGGGGGG-------------------- | 20 | 1 | - | - | - | - | - | - | |
| ----------------------------------TAAAAGGGGGGGGGCATC--------------- | 18 | - | 1 | - | - | - | - | - | |
| rat | tgctcatcttccaggccccaggattttTAAAGGTTAAAAGGGGGGGGGCATCttgggaagacagcat | ||||||||
| ******************************************************************* | |||||||||
| ----------------------------------------------------------------------------- | ENSRNOT00000002714 ENSRNOG00000001979 Dscr1 | ||||||||
| rat | ((((..((((((..(((((....((((((.....))))))....)))))......)))))).)))). | 1.000 -24.80 | |||||||
| rat | chromosome:11:32413850:32413916:1 | Opposite_strand|Intronic_coding|ENSRNOT00000002714|ENSRNOG00000001979 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000002715|ENSRNOG00000001979 ## ENSRNOG00000001979|protein_coding|Dscr1|Calcipressin-1 (Regulator of calcineurin 1) (Down syndrome critical region protein 1 homolog) (Myocyte-enriched calcineurin-interacting protein 1) (MCIP1). [Source:UniProtKB/Swiss-Prot;Acc:Q6IN33] ## {Repeats: dust 32413889 32413897 0 class=dust} |
block1093533 [novel_lenNOK_cloningOK_multiarm_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.33/0.48 | 19/25/0.54 | 1.0 0.8 | 2.2 3.7 | 4 9 | 0 0 | 2 4 | 0 0 | 34 44 | -9 -20 | 5arm_loop_3arm 5arm_loop_3arm | 1 1 | nd nd | 0.48 0.40 | 5 5 | 13 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------------AAGUUAC-------------------------------------------------------- | 7 | novel | |||
| seed | -----------------------------------GGAGAAA------------------------------------------------------------------ | 3 | novel | |||
| seed | ---------------------------------------AAACUUA-------------------------------------------------------------- | 1 | novel | |||
| seed | --------------------------------------------------ACACAGA--------------------------------------------------- | 1 | novel | |||
| seed | -----------------------------------------------GUUACAC------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T4S1 | T5S1 | |||
| --------------------------------------------TAAGTTACACAGATGAAGGGTCCAG--------------------------------------- | 25 | 1 | - | 2 | - | |
| --------------------------------------------TAAGTTACACAGATGAAGG--------------------------------------------- | 19 | - | 2 | - | 1 | |
| --------------------------------------GAAACTTAAGTTACACAGATG------------------------------------------------- | 21 | - | - | - | 1 | |
| --------------------------------------------TAAGTTACACAGATGAAGGGTCCA---------------------------------------- | 24 | - | - | - | 1 | |
| ----------------------------------TGGAGAAACTTAAGTTACACA----------------------------------------------------- | 21 | - | - | - | 1 | |
| ----------------------------------TGGAGAAACTTAAGTTACAC------------------------------------------------------ | 20 | 1 | - | - | - | |
| ----------------------------------------------AGTTACACAGATGAAGGGTC------------------------------------------ | 20 | - | - | - | 1 | |
| -------------------------------------------------TACACAGATGAAGGGTCCAGA-------------------------------------- | 21 | - | - | - | 1 | |
| ----------------------------------TGGAGAAACTTAAGTTACACAGA--------------------------------------------------- | 23 | - | - | - | 1 | |
| rat | gccagatagggcagccaacagacaaaccagcctcTGGAGAAACTTAAGTTACACAGATGAAGGGTCCAGAagccaaggttcatgtttggtggtgatattttctgagca | |||||
| ************************************************************************************************************ | ||||||
| rat | ((((((.((....((((.((((((((((.((.((((((....(((..(((.....)))..))).)))))).))...))))..)))))).))))....)).)))).)). | 0.990 -34.10 | ||||
| rat | chromosome:20:5539532:5539639:1 | intergenic |
novel_lenNOK_cloningOK_multiarm_randfoldOK (2 loci)
sblock5449 [novel_lenNOK_cloningOK_multiarm_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.39/0.45 | 18/20/0.08 | 0.0 0.0 | 0.0 0.2 | 8 4 | 0 0 | 3 4 | 0 0 | 36 10 | 1 26 | 5arm 3arm | 7 7 | nd nd | 0.11 0.10 | 2 2 | 12 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ---------------------------------------------------------------------------------------AGCAGGU---------------------- | 8 | novel | ||||
| seed | -------------------------------------AGCAGGU------------------------------------------------------------------------ | 4 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S1 | T3S2 | T4S2 | T5S2 | |||
| --------------------------------------------------------------------------------------TAGCAGGTAGACTTTAGT------------ | 18 | 1 | 2 | 1 | - | - | |
| ------------------------------------TAGCAGGTAGACTTTAGT-------------------------------------------------------------- | 18 | 1 | 2 | 1 | - | - | |
| --------------------------------------------------------------------------------------TAGCAGGTAGACTTTAGTC----------- | 19 | - | - | 1 | 1 | 1 | |
| --------------------------------------------------------------------------------------TAGCAGGTAGACTTTAGTCC---------- | 20 | 1 | - | - | - | - | |
| rat | tagtcctcaggactgtatgtctgtcagtgttaacttTAGCAGGTAGACTTTAGTtctcaggactgtatgtctgtcagtgttaacttTAGCAGGTAGACTTTAGTCCtcaggactgt | ||||||
| ******************************************************************************************************************** | |||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061163 ENSRNOG00000039846 | ||||||
| rat | (((((((.(((((((...(((((((..((((((..(((((((((((((..(((((.....)))))...)))))))..))))))..)))))))))))))..))))))).))))))). | 1.000 -45.90 | |||||
| rat | chromosome:18:17126506:17126621:-1 | Same_strand|Intronic_coding|ENSRNOT00000061163|ENSRNOG00000039846 ## ENSRNOG00000039846|protein_coding|| ## {Repeats: trf 245 265 0 class=trf,trf 347 365 0 class=trf,trf 295 315 0 class=trf} |
sblock9968 [novel_lenNOK_cloningOK_multiarm_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.44/0.50 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 13 1 | 0 0 | 2 1 | 0 0 | 19 0 | 20 29 | 5arm 3arm | 2 2 | nd nd | 0.39 0.29 | 5 3 | 17 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | --------------------GGAGUGU--------------------------------------------------------------------------------- | 16 | miR-122 | ||
| seed | -------------------------------------------------------------------------------------------CCUUUGU---------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T2S2 | T4S2 | |||
| -------------------TGGAGTGTGAAGGCTTCA----------------------------------------------------------------------- | 18 | 13 | 3 | - | |
| ------------------------------------------------------------------------------------------ACCTTTGTAAACCCTGGA | 18 | - | - | 1 | |
| rat | gccagtggaaacacaggtaTGGAGTGTGAAGGCTTCAgctcatcagcgcagaatagttctagcatctagctggtgagctgttcatcttgtacctttgtaaaccctgga | ||||
| ************************************************************************************************************ | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000005863 ENSRNOG00000004377 Lpin1 | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000034765 ENSRNOG00000004377 Lpin1 | ||||
| rat | .((((.((..(((.((((((.(((.(((((.....((((((((((((..(((...((....)).))).)))))))))))))))))))))))))).)))...)))))). | 0.960 -42.70 | |||
| rat | chromosome:6:40283902:40284009:-1 | Same_strand|Intronic_coding|ENSRNOT00000034765|ENSRNOG00000004377 ## ENSRNOG00000004377|protein_coding|Lpin1|lipin 1 [Source:RefSeq_peptide;Acc:NP_001012111] |
novel_lenNOK_cloningOK_multiarm_shortStem_nonpairedHIGH (2 loci)
sblock11423 [novel_lenNOK_cloningOK_multiarm_shortStem_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.053 | no | no | 0.50/0.56 | 18/20/0.10 | 0.0 0.0 | 0.4 0.0 | 9 1 | 0 0 | 2 1 | 0 0 | 0 40 | 36 -7 | 5arm 3arm_loop | 1 1 | nd nd | 0.35 0.39 | 2 6 | 10 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -GGAGUGU---------------------------------------------------------------------------------------------------------- | 9 | miR-122 | ||
| seed | ---------------------------------------------------------GAACUUG-------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T2S1 | T2S2 | |||
| TGGAGTGTGAAGGTTTGG------------------------------------------------------------------------------------------------ | 18 | - | 3 | 3 | |
| TGGAGTGTGAAGGTTTGGG----------------------------------------------------------------------------------------------- | 19 | - | 2 | - | |
| TGGAGTGTGAAGGTTTGGGT---------------------------------------------------------------------------------------------- | 20 | - | 1 | - | |
| --------------------------------------------------------GGAACTTGGAAGAGCAGC---------------------------------------- | 18 | 1 | - | - | |
| rat | TGGAGTGTGAAGGTTTGGGTgagcttgtctcatcccattagcaaatgctttcttctGGAACTTGGAAGAGCAGCagatgaagttggagagaaaattctgctcttacatcaccta | ||||
| ****************************************************************************************************************** | |||||
| rat | ...((.((((..((..(((((((....((((.(((.(((..((..(((((((((((.......))))))).))))..)).))).)))))))...))).))))..)).)))))). | 0.670 -32.50 | |||
| rat | chromosome:7:117555379:117555492:1 | intergenic |
sblock95 [novel_lenNOK_cloningOK_multiarm_shortStem_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.605 | no | no | 0.33/0.67 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 6 1 | 0 0 | 5 1 | 0 0 | 4 37 | 32 3 | 5arm 3arm | 3 3 | nd nd | 0.33 0.39 | 3 3 | 11 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -----GGGGUGG------------------------------------------------------------------------------------------------------- | 10 | novel | ||||
| seed | -------------------------------------------------------------UGCCUUU----------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S1 | T3S2 | T5S1 | |||
| ----TGGGGTGGGGGGGTTCTT--------------------------------------------------------------------------------------------- | 18 | 6 | 1 | 1 | 1 | 1 | |
| ------------------------------------------------------------TTGCCTTTCAGAATTCAA------------------------------------- | 18 | 1 | - | - | - | - | |
| rat | atcaTGGGGTGGGGGGGTTCTTgttggccagttgagaacatatttttgggtgacttggtcttgcctttcagaattcaatgttttgctcatctacagacccaggcacagccgtggt | ||||||
| ******************************************************************************************************************* | |||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000049326 ENSRNOG00000011310 Pde10a | ||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000016064 ENSRNOG00000011310 Pde10a | ||||||
| rat | (((((((.(((...(((((..(((.((..(((..((((((((((((.(((((((...)))..))))...)))))...))))))))))..)).))))))))...)))..))))))) | 0.780 -30.50 | |||||
| rat | chromosome:1:46632611:46632725:-1 | Same_strand|Intronic_coding|ENSRNOT00000016064|ENSRNOG00000011310 ## Same_strand|Boundary_non-coding|ENSRNOT00000043474|ENSRNOG00000011310 ## ENSRNOG00000011310|protein_coding|Pde10a|phosphodiesterase 10A [Source:RefSeq_peptide;Acc:NP_071572] |
novel_lenNOK_cloningOK_shortStem_5varHIGH_loopOverlap_bulgeHIGH (2 loci)
block959490 [novel_lenNOK_cloningOK_shortStem_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.156 | no | no | 0.42/0.50 | 19/23/0.50 | 2.6 | 0.9 | 7 | 0 | 2 | 0 | 0 | -9 | 5arm_loop_3arm | 3 | nd | 0.30 | 5 | 10 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -CAGCAUU------------------------------------ | 5 | novel | |
| seed | -------UUGCCCA------------------------------ | 4 | novel | |
| seed | ---------GCCCAAG---------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S2 | T5S1 | |||
| ------TTTGCCCAAGTTTGACTTG------------------- | 19 | - | 4 | |
| TCAGCATTTGCCCAAGTTTGACT--------------------- | 23 | 1 | 3 | |
| TCAGCATTTGCCCAAGTTT------------------------- | 19 | - | 1 | |
| --------TGCCCAAGTTTGACTTGCCT---------------- | 20 | - | 1 | |
| rat | TCAGCATTTGCCCAAGTTTGACTTGccttgaaggccaaagttga | |||
| ******************************************** | ||||
| rat | (((((.((.(((((((.....)))).......))).)).))))) | 0.910 -9.31 | ||
| rat | chromosome:1:47969027:47969070:1 | intergenic |
block2247801 [novel_lenNOK_cloningOK_shortStem_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.199 | no | no | 0.45/0.55 | 19/25/0.50 | 1.1 | 2.0 | 13 | 0 | 2 | 0 | 3 | -2 | 5arm_loop | 1 | nd | 0.29 | 4 | 16 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------GCAAUAG---------------------------------------------- | 9 | novel | |
| seed | ----GAUCUGC--------------------------------------------------- | 3 | novel | |
| seed | -------CUGCAAU------------------------------------------------ | 2 | novel | |
| seed | ----------CAAUAGC--------------------------------------------- | 2 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| --------TGCAATAGCGATTCCTCGC----------------------------------- | 19 | - | 4 | |
| ---TGATCTGCAATAGCGATTCCTC------------------------------------- | 22 | 1 | 2 | |
| --------TGCAATAGCGATTCCTCGCTC--------------------------------- | 21 | - | 3 | |
| ------TCTGCAATAGCGATTCCTC------------------------------------- | 19 | - | 2 | |
| --------TGCAATAGCGATTCCTCGCTCCTCA----------------------------- | 25 | - | 2 | |
| ---------GCAATAGCGATTCCTCGCTC--------------------------------- | 20 | - | 1 | |
| ---------GCAATAGCGATTCCTCGCTCCTCA----------------------------- | 24 | - | 1 | |
| rat | ggcTGATCTGCAATAGCGATTCCTCGCTCCTCAggaggaaggcgtgaggtaactgctgagcc | |||
| ************************************************************** | ||||
| rat | ((((.........(((((.((((((((.(((........))).)))))).)).))))))))) | 0.700 -20.40 | ||
| rat | chromosome:7:112747759:112747820:1 | intergenic |
novel_lenNOK_cloningOK_shortStem_5varHIGH_loopOverlap_nonpairedHIGH (2 loci)
block1093669 [novel_lenNOK_cloningOK_shortStem_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.076 | no | no | 0.40/0.46 | 19/25/0.42 | 5.8 | 5.2 | 12 | 0 | 3 | 0 | 4 | -10 | 5arm_loop_3arm | 1 | nd | 0.32 | 3 | 12 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------------GGAAUGG---------------------------------------- | 5 | novel | ||
| seed | -----GUGUGUC------------------------------------------------------ | 2 | novel | ||
| seed | -------------GAAUCUG---------------------------------------------- | 2 | novel | ||
| seed | -----------CUGAAUC------------------------------------------------ | 1 | novel | ||
| seed | -------GUGUCUG---------------------------------------------------- | 1 | novel | ||
| seed | ---------GUCUGAA-------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ------------------TGGAATGGTCTTTCTGGAA----------------------------- | 19 | 1 | - | 3 | |
| ------TGTGTCTGAATCTGGAATGG---------------------------------------- | 20 | - | - | 1 | |
| ----------TCTGAATCTGGAATGGTCT------------------------------------- | 19 | - | 1 | - | |
| ------------TGAATCTGGAATGGTCTTTC---------------------------------- | 20 | - | - | 1 | |
| ----TGTGTGTCTGAATCTGGAA------------------------------------------- | 19 | - | - | 1 | |
| --------TGTCTGAATCTGGAATGGTCT------------------------------------- | 21 | - | - | 1 | |
| ------------TGAATCTGGAATGGTCTTTCTGGAA----------------------------- | 25 | - | - | 1 | |
| ----TGTGTGTCTGAATCTGGAATGG---------------------------------------- | 22 | - | 1 | - | |
| ------------------TGGAATGGTCTTTCTGGAATGGAG------------------------ | 24 | - | - | 1 | |
| rat | tgtgTGTGTGTCTGAATCTGGAATGGTCTTTCTGGAATGGAGgctgggtttaggggctgtttgcag | ||||
| ****************************************************************** | |||||
| rat | ((((...((.(((((((((((......(((((......)))))))))))))))).))....)))). | 1.000 -16.80 | |||
| rat | chromosome:20:5544379:5544444:1 | intergenic |
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