other hairpins
novel_lenNOK_gcHIGH_multiarm_DicerNOK_randfoldOK (2 loci)
sblock2333 [novel_lenNOK_gcHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.63/1.00 | 18/20/0.57 | 0.0 0.0 0.0 | 0.0 0.0 0.2 | 1 1 5 | 0 0 0 | 1 1 3 | 0 0 0 | 43 41 19 | -4 -2 18 | 5arm_loop 3arm_loop 3arm | 1 2 2 | nd nd nd | 0.26 0.17 0.00 | 5 1 0 | 7 | 3 | 0 | -16 |
| reads | miRBase family seed | ||||
| seed | ----------------------------------------------------------------------------------GGGGGGG------------------------------- | 5 | novel | ||
| seed | --------------------------------------------------------------GGGGGGG--------------------------------------------------- | 1 | novel | ||
| seed | --------------------------------------------GGGGCCC--------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S1 | T2S2 | |||
| ---------------------------------------------------------------------------------TGGGGGGGGGGAAAAAACCC------------------- | 20 | 2 | 1 | 1 | |
| ---------------------------------------------------------------------------------TGGGGGGGGGGAAAAAACC-------------------- | 19 | 1 | - | - | |
| -------------------------------------------TGGGGCCCCCCCCCTGGGG---------------------------------------------------------- | 19 | 1 | - | - | |
| -------------------------------------------------------------GGGGGGGGGGGCGCCCCC----------------------------------------- | 18 | - | - | 1 | |
| rat | ccctggttttctcaaaggggcttttttttccccccccccctggTGGGGCCCCCCCCCTGGGGGGGGGGGGGGCGCCCCCccTGGGGGGGGGGAAAAAACCCttttttttttccccggggg | ||||
| ************************************************************************************************************************ | |||||
| rat | ((((((.......(((((((...((((((((((((((((..((.((((((((((((((.....))))))))).))))).)).)))))))))))))))))))))))........)))))). | 1.000 -88.76 | |||
| rat | chromosome:10:33421325:33421444:-1 | intergenic ## {Repeats: trf 1 5 0 class=trf,GC_rich 1 63 -1 class=Low_complexity,dust 33421366 33421384 0 class=dust,trf 14 32 0 class=trf,trf 4 23 0 class=trf,GC_rich 14 32 -1 class=Low_complexity,trf 31 48 0 class=trf,dust 33421383 33421402 0 class=dust,trf 1 12 0 class=trf,dust 33421344 33421364 0 class=dust,GC_rich 31 50 -1 class=Low_complexity,GC_rich 1 12 -1 class=Low_complexity} |
novel_lenNOK_gcHIGH_multiarm_loopOverlap_nonpairedHIGH (2 loci)
sblock2157 [novel_lenNOK_gcHIGH_multiarm_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.891 | no | no | 0.68/1.00 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 5 40 | 30 -1 | 5arm 3arm | 3 3 | nd nd | 0.32 0.32 | 2 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------CCGCUGG--------------------------------------------------- | 1 | novel |
| seed | ------GCGGCGG--------------------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| -----------------------------------------------------------ACCGCTGGTCCCGGATCTG---------------------------------------- | 19 | 1 | |
| -----CGCGGCGGGGCGGGCGGGG---------------------------------------------------------------------------------------------- | 19 | 1 | |
| rat | ggcacCGCGGCGGGGCGGGCGGGGacgcggcagggaccaggaggcgcgaggcggacgatACCGCTGGTCCCGGATCTGttacctgccgtagacccagcggtctcgaggctcggatccc | ||
| ********************************************************************************************************************** | |||
| rat | ((..((((..((((((..(((((...((((((((...((((.((.((..(((((......))))).)).))...))))...))))))))...))).)).))))))..))..))..)). | 0.480 -52.70 |
| rat | chromosome:1:209202499:209202616:1 | intergenic |
sblock7257 [novel_lenNOK_gcHIGH_multiarm_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.638 | no | no | 0.83/0.94 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 35 1 | -4 27 | 5arm_loop 3arm | 1 1 | nd nd | 0.39 0.33 | 5 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------------------------------UCCGGCG----------- | 1 | novel | |
| seed | ------------------------------------UCCCCGC------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T3S1 | |||
| -------------------------------------------------------------------------------------GTCCGGCGGGGGGGGGGG- | 18 | - | 1 | |
| -----------------------------------GTCCCCGCCCCCGGAACC--------------------------------------------------- | 18 | 1 | - | |
| rat | gctccaggccccggaactgaccctcgtcagcccccGTCCCCGCCCCCGGAACCagcggccgaggggcgtggagcggcgcgcgcggGTCCGGCGGGGGGGGGGGc | |||
| ******************************************************************************************************** | ||||
| rat | (((((...(((((.....(((((.(((..((..(((..(((((((((((.........))).)))))).))..))).))))).)))))...)))))...))))) | 0.990 -58.40 | ||
| rat | chromosome:20:8881051:8881154:1 | intergenic ## {Repeats: dust 8881143 8881153 0 class=dust,GC_rich 13 31 1 class=Low_complexity,GC_rich 1 57 1 class=Low_complexity} |
novel_lenNOK_gcHIGH_randfoldOK_bulgeHIGH (2 loci)
block1049009 [novel_lenNOK_gcHIGH_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.95/0.95 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 20 | 3 | 5arm | 2 | nd | 0.21 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------GGGGCGU------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T1S2 | |||
| --------------------GGGGGCGTGGGGGGCGGGG------------------------------------------------- | 19 | 1 | |
| rat | acagtcagatacatcttgtgGGGGGCGTGGGGGGCGGGGgagcaataattaacctctcccgcctcagcccccaaatgctgctgcttgt | ||
| **************************************************************************************** | |||
| rat | ((((.(((...(((......((((((....((((((((((((...........)))))))))))).))))))..)))...))).)))) | 0.440 -42.90 |
| rat | chromosome:1:250199562:250199649:1 | intergenic ## {Repeats: dust 250199582 250199601 0 class=dust} |
block1123815 [novel_lenNOK_gcHIGH_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.94/0.94 | 18/18/0.00 | 0.0 | 0.0 | 2 | 0 | 2 | 0 | 16 | 19 | 5arm | 1 | nd | 0.28 | 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------GGGGGGC---------------------------------------------------------------------------------------- | 2 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S1 | |||
| ----------------GGGGGGGCGGTGGGGCCC------------------------------------------------------------------------------ | 18 | 1 | 1 | |
| rat | ccatccccggggttggGGGGGGGCGGTGGGGCCCttagggaccttggtcgtccgcgggagggcttccaggtccctccccatgtccggtgctccctcagactcagcgggggtg | |||
| **************************************************************************************************************** | ||||
| rat | .((((((((((((((((((((.(((((((((.....(((((((.(((..((((......))))..)))))))))))))))...)).)).))))))))).)))..)))))))) | 1.000 -66.80 | ||
| rat | chromosome:2:1192643:1192754:-1 | intergenic ## {Repeats: dust 1192732 1192739 0 class=dust} |
novel_lenNOK_gcHIGH_randfoldOK_nonpairedHIGH (2 loci)
block414733 [novel_lenNOK_gcHIGH_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.95/0.95 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 8 | 17 | 5arm | 2 | nd | 0.32 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------GGCCGGG------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T2S1 | |||
| --------TGGCCGGGGCGGGGGGGGG------------------------------------------------------------------- | 19 | 1 | |
| rat | tcctggggTGGCCGGGGCGGGGGGGGGgaagcaacaggagatgtgggaaaggcaggggtactggggttcaacccccagcctgggcgagcaagga | ||
| ********************************************************************************************** | |||
| -------------------------------------------------------------------------------------------------------- | ENSRNOT00000005359 ENSRNOG00000004005 Camk2b | ||
| -------------------------------------------------------------------------------------------------------- | ENSRNOT00000005441 ENSRNOG00000004005 Camk2b | ||
| -------------------------------------------------------------------------------------------------------- | ENSRNOT00000042299 ENSRNOG00000004005 Camk2b | ||
| -------------------------------------------------------------------------------------------------------- | ENSRNOT00000045935 ENSRNOG00000004005 Camk2b | ||
| -------------------------------------------------------------------------------------------------------- | ENSRNOT00000057235 ENSRNOG00000004005 Camk2b | ||
| -------------------------------------------------------------------------------------------------------- | ENSRNOT00000057234 ENSRNOG00000004005 Camk2b | ||
| -------------------------------------------------------------------------------------------------------- | ENSRNOT00000057233 ENSRNOG00000004005 Camk2b | ||
| rat | ((((...((.(((.((((..(((((..((.((..(((....(((.......)))......)))..))))..))))).)))).)))..)).)))) | 0.960 -42.40 |
| rat | chromosome:14:86655634:86655727:1 | Opposite_strand|Intronic_coding|ENSRNOT00000057233|ENSRNOG00000004005 ## ENSRNOG00000004005|protein_coding|Camk2b|Calcium/calmodulin-dependent protein kinase type II beta chain (EC 2.7.11.17) (CaM-kinase II beta chain) (CaM kinase II subunit beta) (CaMK-II subunit beta). [Source:UniProtKB/Swiss-Prot;Acc:P08413] ## {Repeats: dust 86655648 86655661 0 class=dust} |
block778701 [novel_lenNOK_gcHIGH_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.94/0.94 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 8 | 10 | 3arm | 1 | nd | 0.39 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------CUCCGGG------------------ | 1 | novel |
| len | cloning frequencies | ||
| T4S2 | |||
| ----------------------------------------------------------GCTCCGGGCGGGGGGGGG-------- | 18 | 1 | |
| rat | cttatttcttaaacaaccgtgcaagagttttcaaatggagaagaaagaatttgaagaaGCTCCGGGCGGGGGGGGGgagagggg | ||
| ************************************************************************************ | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000052018 ENSRNOG00000034007 Nr3c2 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000046177 ENSRNOG00000034007 Nr3c2 | ||
| rat | ((..((((((......((.(((..((((((((((((............))))))))..))))...))).))...))))))..)) | 1.000 -20.80 |
| rat | chromosome:19:32555358:32555441:-1 | Same_strand|Intronic_coding|ENSRNOT00000046177|ENSRNOG00000034007 ## ENSRNOG00000034007|protein_coding|Nr3c2|Mineralocorticoid receptor (MR) (Nuclear receptor subfamily 3 group C member 2). [Source:UniProtKB/Swiss-Prot;Acc:P22199] ## {Repeats: dust 32555366 32555374 0 class=dust} |
novel_lenNOK_gcHIGH_randfoldOK_nonpairedHIGH_bulgeHIGH (2 loci)
block931931 [novel_lenNOK_gcHIGH_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 1.00/1.00 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 5 | 2 | 5arm | 2 | nd | 0.37 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------CCCGCCG---------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T2S1 | |||
| -----GCCCGCCGCCCCGCCCCGG----------------------------------------------------------------------------------- | 19 | 1 | |
| rat | gctctGCCCGCCGCCCCGCCCCGGgccgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagccagcggcaccggctccggcagcggc | ||
| *********************************************************************************************************** | |||
| rat | ((((((((.((((..((((....(((......................................................))).))))...))))...))))).))) | 0.720 -24.48 |
| rat | chromosome:1:250956918:250957024:-1 | intergenic ## {Repeats: GC_rich 5 23 -1 class=Low_complexity,dust 250957001 250957020 0 class=dust,GC_rich 1 23 -1 class=Low_complexity} |
block1310639 [novel_lenNOK_gcHIGH_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.94/0.94 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 42 | 1 | 3arm | 1 | nd | 0.39 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------GCGCGCC---------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T2S1 | |||
| ----------------------------------------------------------CGCGCGCCGCGGCCGGAC------------------------------------------ | 18 | 1 | |
| rat | cctctgggcctccgccccgcgccccgcgtccccccgcccgctctggggcgccggagtcCGCGCGCCGCGGCCGGACggggtgggtggggctgcgagcgcgtggggagggggctggagg | ||
| ********************************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000027182 ENSRNOG00000020027 Arhgef2 | ||
| rat | (((((.(((((((.((((((((..(((((((((((((((..(((((((((((((...))).)))))....)))))..))))))).))))).)))...)))))))).)))))))))))) | 0.990 -86.00 |
| rat | chromosome:2:180748492:180748609:1 | Same_strand|Intronic_coding|ENSRNOT00000027182|ENSRNOG00000020027 ## ENSRNOG00000020027|protein_coding|Arhgef2|rho/rac guanine nucleotide exchange factor (GEF) 2 [Source:RefSeq_peptide;Acc:NP_001012079] ## {Repeats: GC_rich 47 63 1 class=Low_complexity,GC_rich 1 63 1 class=Low_complexity} |
novel_lenNOK_gcHIGH_shortStem_loopOverlap_nonpairedHIGH (2 loci)
block1812629 [novel_lenNOK_gcHIGH_shortStem_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.107 | no | no | 1.00/1.00 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 0 | -1 | 5arm_loop | 1 | nd | 0.32 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -CCGGCGG-------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| GCCGGCGGGCGCCCCGCCC--------------------------- | 19 | 1 | |
| rat | GCCGGCGGGCGCCCCGCCCacatcggcgtcccgcccacatccgtgc | ||
| ********************************************** | |||
| rat | (((((.(((((...((((......))))...)))))....))).)) | 0.780 -20.30 |
| rat | chromosome:5:8968792:8968837:1 | intergenic ## {Repeats: trf 23 34 0 class=trf} |
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