other hairpins
novel_lenNOK_gcHIGH_shortStem_loopOverlap_nonpairedHIGH (2 loci)
block2183396 [novel_lenNOK_gcHIGH_shortStem_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.690 | no | no | 0.95/0.95 | 19/19/0.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 1 | -3 | 3arm_loop | 1 | nd | 0.37 | 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------CACCGCC------------ | 2 | novel |
| len | cloning frequencies | ||
| T1S2 | |||
| ------------------CCACCGCCGCGCGCCGCCG- | 19 | 2 | |
| rat | gtagcgggccaccgcgggCCACCGCCGCGCGCCGCCGc | ||
| ************************************** | |||
| rat | ((.((((((....((((....))))...)).)))).)) | 0.990 -16.60 |
| rat | chromosome:7:10788806:10788843:1 | intergenic ## {Repeats: GC_rich 15 34 1 class=Low_complexity,GC_rich 1 36 1 class=Low_complexity} ## {SimpF: oe = 1.00 0 CpG} |
novel_lenNOK_gcHIGH_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH (2 loci)
block1063484 [novel_lenNOK_gcHIGH_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.499 | no | no | 0.94/0.94 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | -1 | 3arm | 1 | nd | 0.39 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------GGCGGGG-------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| ----------------------GGGCGGGGCCGGCCCACC---- | 18 | 1 | |
| rat | ccctgccagccggggtgcccagGGGCGGGGCCGGCCCACCaggg | ||
| ******************************************** | |||
| rat | (((((...(((((..((((....))))...)))))....))))) | 0.930 -22.90 |
| rat | chromosome:20:8149832:8149875:-1 | intergenic |
block1547458 [novel_lenNOK_gcHIGH_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.238 | no | no | 0.94/0.94 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 2 | -2 | 3arm_loop | 2 | nd | 0.44 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------CCCGCCA------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S2 | |||
| ----------------------------CCCCGCCACCCCGCCCCC-- | 18 | 1 | |
| rat | ccggcaaccggctcagcggtagtacctcCCCCGCCACCCCGCCCCCgg | ||
| ************************************************ | |||
| rat | ((((....(((....((((...........))))....)))...)))) | 0.990 -13.20 |
| rat | chromosome:4:62786620:62786667:-1 | intergenic |
novel_lenNOK_loopOverlap_mirtron_randfoldOK (2 loci)
block2068617 [novel_lenNOK_loopOverlap_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.39/0.39 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 34 | -1 | 5arm_loop | 1 | 3 | 0.28 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------GAGGUAU------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T4S1 | |||
| ----------------------------------TGAGGTATGCTTTTCTGT-------------------------------------------------------------- | 18 | 1 | |
| rat | gagctcaaattctttatgtttcgggaaattctgcTGAGGTATGCTTTTCTGTtaacgggaaagaaaagaagcctagaaattcatagaaaatcttgggactggagagatggttca | ||
| ****************************************************************************************************************** | |||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000017118 ENSRNOG00000012792 Tdrd9 | ||
| rat | ((((.((..(((((((.((..(((((..(((((.((((((...((((((((....)))))))).......))).......))))))))..)))))..))))))))).)))))). | 0.790 -32.01 |
| rat | chromosome:6:136843973:136844086:1 | Same_strand|Boundary_non-coding|ENSRNOT00000017118|ENSRNOG00000012792 ## ENSRNOG00000012792|protein_coding|Tdrd9| |
block2954658 [novel_lenNOK_loopOverlap_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.58/0.62 | 19/21/0.50 | 0.0 | 1.0 | 2 | 0 | 1 | 0 | 6 | -1 | 5arm_loop | 5 | 2 | 0.26 | 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------AGGACAG-------------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------CAGGACAGGTACAGCACAG--------------------------------- | 19 | 1 | |
| ------CAGGACAGGTACAGCACAGGC------------------------------- | 21 | 1 | |
| rat | ggtggtCAGGACAGGTACAGCACAGGCagtacctgtgcgagctttccccacaccacca | ||
| ********************************************************** | |||
| >>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000026359 ENSRNOG00000039295 | ||
| rat | ((((((..(((.((((...(((((((.....)))))))..)))))))....)))))). | 1.000 -27.90 |
| rat | chromosome:X:29690930:29690987:1 | Same_strand|Boundary_coding|ENSRNOT00000026359|ENSRNOG00000039295 ## ENSRNOG00000039295|protein_coding|| |
novel_lenNOK_multiarm_5varHIGH_bulgeHIGH (2 loci)
block1067068 [novel_lenNOK_multiarm_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.030 | no | no | 0.42/0.56 | 18/24/0.67 | 2.4 0.0 | 5.2 0.0 | 5 1 | 0 0 | 3 1 | 0 0 | 12 24 | 3 -8 | 5arm 5arm_loop_3arm | 2 2 | nd nd | 0.28 0.54 | 4 7 | 6 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ----------------CCUUUGA---------------------------------------------------------- | 2 | novel | ||
| seed | -------------GCUCCUU------------------------------------------------------------- | 2 | novel | ||
| seed | -------------------UUGACUG------------------------------------------------------- | 1 | novel | ||
| seed | -------------------------GCAGCAA------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S1 | T5S1 | |||
| ---------------TCCTTTGACTGCAGCAAAAGCA-------------------------------------------- | 22 | 1 | - | 1 | |
| ------------------TTTGACTGCAGCAAAAGCA-------------------------------------------- | 19 | - | - | 1 | |
| ------------TGCTCCTTTGACTGCAGC--------------------------------------------------- | 18 | - | - | 1 | |
| ------------------------TGCAGCAAAAGCATGCCTTCCAGT--------------------------------- | 24 | - | - | 1 | |
| ------------TGCTCCTTTGACTGCAGCAAAAG---------------------------------------------- | 23 | - | 1 | - | |
| rat | gcaggcccagacTGCTCCTTTGACTGCAGCAAAAGCATGCCTTCCAGTatgcaggcagtcacgaggtgccttcacgaatgc | ||||
| ********************************************************************************* | |||||
| rat | (((......((..((.(((((((((((.......((((((......))))))..))))))).)))).))..)).....))) | 0.820 -26.80 | |||
| rat | chromosome:20:13194740:13194820:-1 | intergenic |
sblock6344 [novel_lenNOK_multiarm_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.332 | no | no | 0.30/0.60 | 18/23/0.50 | 0.0 2.6 | 0.0 1.0 | 1 5 | 0 0 | 1 3 | 0 0 | 1 34 | 34 2 | 5arm 3arm | 2 2 | nd nd | 0.30 0.48 | 4 11 | 6 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------------------------------------ACCAAAC-------------------------------------------- | 2 | novel | |||
| seed | --UCCUGAG--------------------------------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | ----------------------------------------------------------------UCAAAAC------------------------------------------------- | 1 | novel | |||
| seed | --------------------------------------------------------------UAUCAAA--------------------------------------------------- | 1 | novel | |||
| seed | --------------------------------------------------------------------AACCAAA--------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T2S2 | T4S1 | T5S2 | |||
| --------------------------------------------------------------------AACCAAACAATTCGCTCC---------------------------------- | 18 | - | - | 2 | - | |
| -GTCCTGAGACCTTGGGCAGA--------------------------------------------------------------------------------------------------- | 20 | 1 | - | - | - | |
| ---------------------------------------------------------------ATCAAAACCAAACAATTCGCTCC---------------------------------- | 23 | - | 1 | - | - | |
| -------------------------------------------------------------CTATCAAAACCAAACAATTC--------------------------------------- | 20 | - | - | 1 | - | |
| -------------------------------------------------------------------AAACCAAACAATTCGCTCC---------------------------------- | 19 | - | - | - | 1 | |
| rat | gGTCCTGAGACCTTGGGCAGAatcgtgaatgtcgttggagaaccgattgatgagagaggtcCTATCAAAACCAAACAATTCGCTCCaatgcatgctgaggcccttgagttcatagagatg | |||||
| ************************************************************************************************************************ | ||||||
| rat | .((((((.((.(((((((....(((...(((.((((((((...(((((((((.((....)).))))))...........))))))))))))))..))).))))..))).)).))).))). | 0.920 -32.10 | ||||
| rat | chromosome:2:28334664:28334783:1 | intergenic |
novel_lenNOK_multiarm_5varHIGH_loopOverlap_mirtron (2 loci)
block2082994 [novel_lenNOK_multiarm_5varHIGH_loopOverlap_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.346 | no | no | 0.56/0.72 | 18/25/0.50 | 0.0 1.3 | 0.0 0.7 | 1 3 | 0 0 | 1 2 | 0 0 | 49 24 | -20 4 | 5arm_loop_3arm 3arm | 1 1 | 14 2 | 0.36 0.11 | 4 1 | 4 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------CAUCCUG---------------------------------------- | 2 | novel | |
| seed | -------------------------------------------------------------------CUGACAG------------------------------------ | 1 | novel | |
| seed | --------------------------------------------------ACAGUGA----------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T4S2 | |||
| --------------------------------------------------------------CCATCCTGACAGCCCTGCTCCC-------------------------- | 22 | 1 | - | |
| ------------------------------------------------------------------CCTGACAGCCCTGCTCCC-------------------------- | 18 | - | 1 | |
| -------------------------------------------------TACAGTGAGCTGGCCATCCTGACAG------------------------------------ | 25 | 1 | - | |
| --------------------------------------------------------------CCATCCTGACAGCCCTGCTCCCCC------------------------ | 24 | 1 | - | |
| rat | cctgtactccgtgagtacctgtggagagcccgggggtgcctgtcactgaTACAGTGAGCTGGCCATCCTGACAGCCCTGCTCCCCCaggacgagcggctgaatgtgacag | |||
| ************************************************************************************************************** | ||||
| >>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000026341 ENSRNOG00000019459 Oaz1 | |||
| rat | .((((((.((((..((.((((.((.((((...((((...((((((..(((.(((....)))...))).)))))))))))))).))))))))..))))......))).))) | 0.970 -41.00 | ||
| rat | chromosome:7:10395298:10395407:-1 | Same_strand|Intronic_coding|ENSRNOT00000026341|ENSRNOG00000019459 ## ENSRNOG00000019459|protein_coding|Oaz1|Ornithine decarboxylase antizyme (ODC-Az). [Source:UniProtKB/Swiss-Prot;Acc:P54370] |
sblock4876 [novel_lenNOK_multiarm_5varHIGH_loopOverlap_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.109 | no | no | 0.62/0.78 | 18/21/0.17 | 0.0 1.3 0.0 | 0.0 2.7 0.0 | 1 3 2 | 0 0 0 | 1 2 1 | 0 0 0 | 8 43 31 | 21 -19 7 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | 49 11 3 | 0.32 0.47 0.28 | 5 5 3 | 6 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -------------------------------------------------------------UGGUGCU----------------------------------------- | 2 | novel | |||
| seed | ---------CCGAGUC--------------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | -----------------------------------------------UCUCGCA------------------------------------------------------- | 1 | novel | |||
| seed | --------------------------------------------CCCUCUC---------------------------------------------------------- | 1 | novel | |||
| seed | ---------------------------------------------CCUCUCG--------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T2S1 | T3S2 | T4S2 | |||
| ------------------------------------------------------------ATGGTGCTGGGGCCCGCC------------------------------- | 18 | - | - | 2 | - | |
| -------------------------------------------CCCCTCTCGCAGCAGGTA------------------------------------------------ | 18 | - | 1 | - | - | |
| --------GCCGAGTCCGCACGAAGAT---------------------------------------------------------------------------------- | 19 | 1 | - | - | - | |
| --------------------------------------------CCCTCTCGCAGCAGGTATG---------------------------------------------- | 19 | - | - | - | 1 | |
| ----------------------------------------------CTCTCGCAGCAGGTATGGTGC------------------------------------------ | 21 | - | 1 | - | - | |
| rat | ctcgggagGCCGAGTCCGCACGAAGATggcggctccactcctaCCCCTCTCGCAGCAGGTATGGTGCTGGGGCCCGCCgcggggtggtgcggacggtggttgccacgag | |||||
| ************************************************************************************************************* | ||||||
| ..................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000018960 ENSRNOG00000013502 LOC361120 | |||||
| ..............................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000060612 ENSRNOG00000013502 LOC361120 | |||||
| ..............................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000040387 ENSRNOG00000013502 LOC361120 | |||||
| rat | ((((((..((((.((((((((.....(((((((((((..((((((.((.....))..)))).))...))))))).)))).......))))))))..))))..)).)))) | 0.970 -52.50 | ||||
| rat | chromosome:16:17846444:17846552:1 | Same_strand|Boundary_coding|ENSRNOT00000060612|ENSRNOG00000013502 ## Same_strand|Intronic_coding|ENSRNOT00000018960|ENSRNOG00000013502 ## Same_strand|Boundary_non-coding|ENSRNOT00000060612|ENSRNOG00000013502 ## ENSRNOG00000013502|protein_coding|LOC361120|similar to Epidermal growth factor receptor substrate 15-like 1 (Eps15-related protein) (Eps15R) (Epidermal growth factor receptor pathway substrate 15 related sequence) (Eps15-rs) [Source:RefSeq_peptide;Acc:NP_001025092] ## {SimpF: oe = 0.91 1 CpG} |
novel_lenNOK_multiarm_5varHIGH_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH (2 loci)
sblock6385 [novel_lenNOK_multiarm_5varHIGH_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.42/0.47 | 19/23/0.40 | 0.0 2.0 0.0 | 0.0 1.3 0.0 | 1 3 1 | 0 0 0 | 1 3 1 | 0 0 0 | 2 40 36 | 32 -21 -3 | 5arm 3arm_loop 3arm_loop | 1 1 1 | nd nd nd | 0.37 0.41 0.42 | 4 7 6 | 5 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ------------------------------------------------------ACUGAGU--------------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------------AGUCCUA----------------------------------------------- | 1 | novel | ||
| seed | ---GCAUAGU------------------------------------------------------------------------------------------------------ | 1 | novel | ||
| seed | ----------------------------------------------------AAACUGA----------------------------------------------------- | 1 | novel | ||
| seed | --------------------------------------------------AGAAACU------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T4S2 | T5S1 | |||
| -----------------------------------------------------AACTGAGTCCTATGAACCT---------------------------------------- | 19 | - | - | 1 | |
| ---------------------------------------------------GAAACTGAGTCCTATGAACCTGA-------------------------------------- | 23 | 1 | - | - | |
| ---------------------------------------------------------GAGTCCTATGAACCTGAAC------------------------------------ | 19 | 1 | - | - | |
| --TGCATAGTGCTTAAGACAG------------------------------------------------------------------------------------------- | 19 | 1 | - | - | |
| -------------------------------------------------GAGAAACTGAGTCCTATGAACC----------------------------------------- | 22 | - | 1 | - | |
| rat | tcTGCATAGTGCTTAAGACAGtatttccataatcaatgacggtttaataGAGAAACTGAGTCCTATGAACCTGAACtcctttatggctaatacaattaagcaagaatggaga | ||||
| **************************************************************************************************************** | |||||
| rat | (((.(((..(((((((....(((((.((((((........(((((.((((.((.......))))))))))).........))))))..)))))..)))))))...))).))) | 0.990 -27.93 | |||
| rat | chromosome:2:52462091:52462202:1 | intergenic |
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