other hairpins
novel_lenNOK_multiarm_5varHIGH_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH (2 loci)
sblock7466 [novel_lenNOK_multiarm_5varHIGH_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.43/0.58 | 18/21/0.50 | 0.0 2.0 | 0.0 0.3 | 1 3 | 0 0 | 1 1 | 0 0 | 15 7 | -7 4 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.43 0.43 | 7 4 | 4 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------CAGACUA----------------- | 1 | novel | |
| seed | ----------------GGAUGUC---------------------------------------------- | 1 | novel | |
| seed | -------------------------------------------CACAGAC------------------- | 1 | novel | |
| seed | -----------------------------------------UGCACAG--------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T3S2 | |||
| ----------------------------------------ATGCACAGACTACTAGGGGAC-------- | 21 | 1 | - | |
| ---------------AGGATGTCATGTTCAGATGAG--------------------------------- | 21 | - | 1 | |
| --------------------------------------------ACAGACTACTAGGGGACA------- | 18 | 1 | - | |
| ------------------------------------------GCACAGACTACTAGGGGAC-------- | 19 | 1 | - | |
| rat | ggaaccaccacagtcAGGATGTCATGTTCAGATGAGgaacATGCACAGACTACTAGGGGACAtggtcct | |||
| ********************************************************************* | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000021178 ENSRNOG00000015420 Stxbp1 | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000021189 ENSRNOG00000015420 Stxbp1 | |||
| rat | ((.((((((..(((.((..((((((((((.......))))))).)))..)))))..))....)))))). | 1.000 -23.10 | ||
| rat | chromosome:3:11773098:11773166:-1 | Same_strand|Intronic_coding|ENSRNOT00000021178|ENSRNOG00000015420 ## ENSRNOG00000015420|protein_coding|Stxbp1|Syntaxin-binding protein 1 (Unc-18 homolog) (Unc-18A) (Unc-18-1) (N- Sec1) (rbSec1) (p67). [Source:UniProtKB/Swiss-Prot;Acc:P61765] |
novel_lenNOK_multiarm_5varHIGH_nonpairedHIGH (2 loci)
block1469320 [novel_lenNOK_multiarm_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.040 | no | no | 0.37/0.53 | 19/25/0.44 | 4.3 2.5 | 5.1 0.5 | 7 2 | 0 0 | 2 1 | 0 0 | 23 37 | 4 -6 | 5arm 5arm_loop_3arm | 1 1 | nd nd | 0.32 0.44 | 2 7 | 9 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------------GGUGUGC------------------------------------------------------------------------------ | 3 | novel | |
| seed | ------------------------CCUCUUC--------------------------------------------------------------------------------------- | 3 | novel | |
| seed | ---------------------------CUUCUUG------------------------------------------------------------------------------------ | 1 | novel | |
| seed | --------------------------------------GCCAUAU------------------------------------------------------------------------- | 1 | novel | |
| seed | -------------------------------------------AUAACGG-------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| --------------------------------TGGTGTGCCATATAACGGAG------------------------------------------------------------------ | 20 | - | 3 | |
| -----------------------TCCTCTTCTTGGTGTGCCA---------------------------------------------------------------------------- | 19 | - | 3 | |
| ------------------------------------------TATAACGGAGGAACAATGT--------------------------------------------------------- | 19 | - | 1 | |
| --------------------------TCTTCTTGGTGTGCCATATAAC---------------------------------------------------------------------- | 22 | 1 | - | |
| -------------------------------------TGCCATATAACGGAGGAACAATGTT-------------------------------------------------------- | 25 | - | 1 | |
| rat | atttcatgccagatgccttctttTCCTCTTCTTGGTGTGCCATATAACGGAGGAACAATGTTcccaccctgggtgatccaggagagaaaagggtaacaaaaggccgagggctggggta | |||
| ********************************************************************************************************************** | ||||
| rat | ((..((.(((....((((((((((.(((.((((((..((((.......((.(((((...)))))..))...))))..))))))))).)))))).......))))....)))))..)). | 0.600 -37.11 | ||
| rat | chromosome:3:76936526:76936643:1 | intergenic |
sblock971 [novel_lenNOK_multiarm_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.571 | no | no | 0.38/0.48 | 19/25/0.44 | 0.0 0.0 0.0 1.4 | 0.0 0.0 0.0 1.6 | 2 1 1 5 | 0 0 0 0 | 1 1 1 4 | 0 0 0 0 | 3 37 46 16 | 39 5 -10 10 | 5arm 5arm 5arm_loop_3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.32 0.53 0.56 0.33 | 3 7 7 4 | 9 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | -----------------------------------------------------------------------------CACGUGU------------------------------------ | 2 | novel | |||||
| seed | ----AGUGAUU------------------------------------------------------------------------------------------------------------- | 2 | novel | |||||
| seed | -----------------------------------------------UUGAGGA------------------------------------------------------------------ | 1 | novel | |||||
| seed | -------------------------------------------------------------------------------CGUGUUU---------------------------------- | 1 | novel | |||||
| seed | ----------------------------------------------------------------------------ACACGUG------------------------------------- | 1 | novel | |||||
| seed | --------------------------------------GGCUGAG--------------------------------------------------------------------------- | 1 | novel | |||||
| seed | ---------------------------------------------------------------------------------UGUUUGU-------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T4S2 | T5S2 | |||
| ---TAGTGATTGTTGGAGGAGA-------------------------------------------------------------------------------------------------- | 19 | - | - | - | - | 2 | - | |
| ----------------------------------------------------------------------------ACACGTGTTTGTGATTGAAGC----------------------- | 21 | - | 2 | - | - | - | - | |
| --------------------------------------------------------------------------------GTGTTTGTGATTGAAGCCAAGTCC---------------- | 24 | - | - | - | - | - | 1 | |
| ------------------------------------------------------------------------------ACGTGTTTGTGATTGAAGC----------------------- | 19 | 1 | - | - | - | - | - | |
| ----------------------------------------------GTTGAGGAAATGGCTCTGCAGCTTT------------------------------------------------- | 25 | - | - | 1 | - | - | - | |
| ---------------------------------------------------------------------------AACACGTGTTTGTGATTGAAG------------------------ | 21 | - | - | - | 1 | - | - | |
| -------------------------------------AGGCTGAGTGTTGAGGAAA---------------------------------------------------------------- | 19 | 1 | - | - | - | - | - | |
| rat | gagTAGTGATTGTTGGAGGAGAacccatgagtaatacAGGCTGAGTGTTGAGGAAATGGCTCTGCAGCTTTaagtAACACGTGTTTGTGATTGAAGCCAAGTCCctttgctgtgctgctt | |||||||
| ************************************************************************************************************************ | ||||||||
| rat | ((((((((...((.(((((.((.........((((((((((...((((((.......((((....)))).....))))))..))))))).)))........)))))))))..)))))))) | 0.650 -29.33 | ||||||
| rat | chromosome:1:208425374:208425493:-1 | intergenic |
novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_mirtron_nonpairedHIGH_bulgeHIGH (2 loci)
sblock8128 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_mirtron_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.471 | no | no | 0.58/0.75 | 18/24/0.50 | 0.0 0.0 2.3 1.5 | 0.0 0.0 1.3 1.0 | 1 2 3 2 | 0 0 0 0 | 1 1 3 2 | 0 0 0 0 | 14 18 17 0 | 0 -7 0 15 | 5arm 5arm_loop_3arm 3arm 3arm | 1 1 1 1 | 43 39 17 3 | 0.33 0.33 0.35 0.42 | 2 4 5 4 | 8 | 6 | 0 | 3 |
| reads | miRBase family seed | |||||||
| seed | -------------------AACGGAG------------------------------------------------- | 2 | novel | |||||
| seed | ----------------------------------------CUGCCGU---------------------------- | 1 | novel | |||||
| seed | -------------------------------------CCGCUGC------------------------------- | 1 | novel | |||||
| seed | ----------------------------------------------------UGACCCG---------------- | 1 | novel | |||||
| seed | -----------------------------------------UGCCGUC--------------------------- | 1 | novel | |||||
| seed | -------------------------------------------------------CCCGUGA------------- | 1 | novel | |||||
| seed | ---------------ACGCAAC----------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T2S1 | T2S2 | T3S1 | T5S1 | T5S2 | |||
| ------------------CAACGGAGGCAGGTTGGAGCC------------------------------------ | 21 | - | - | - | - | - | 2 | |
| ------------------------------------------------------ACCCGTGAGTGCTGGGACC-- | 19 | - | - | - | - | - | 1 | |
| --------------GACGCAACGGAGGCAGGT------------------------------------------- | 18 | 1 | - | - | - | - | - | |
| ---------------------------------------------------ATGACCCGTGAGTGCTGGGACCTT | 24 | - | 1 | - | - | - | - | |
| ------------------------------------GCCGCTGCCGTCGCCATGAC------------------- | 20 | - | - | - | - | 1 | - | |
| ---------------------------------------GCTGCCGTCGCCATGACCC----------------- | 19 | - | - | 1 | - | - | - | |
| ----------------------------------------CTGCCGTCGCCATGACCC----------------- | 18 | - | - | - | 1 | - | - | |
| rat | ggcccgaacgagggGACGCAACGGAGGCAGGTTGGAGCCGCTGCCGTCGCCATGACCCGTGAGTGCTGGGACCTT | |||||||
| *************************************************************************** | ||||||||
| ...........................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++ | ENSRNOT00000020756 ENSRNOG00000015277 LOC502663 | |||||||
| rat | ((((((.((..(((...((.((((.(((.(((....)))))).)))).)).....)))....))..)))).)).. | 1.000 -29.80 | ||||||
| rat | chromosome:3:108255238:108255312:1 | Same_strand|Exonic_non-coding|ENSRNOT00000020756|ENSRNOG00000015277 ## Same_strand|Boundary_non-coding|ENSRNOT00000020756|ENSRNOG00000015277 ## ENSRNOG00000015277|protein_coding|LOC502663|small EDRK-rich factor 2 [Source:RefSeq_peptide;Acc:NP_001092252] ## {SimpF: oe = 0.93 -1 CpG, -1 Eponine} |
sblock955 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_mirtron_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.036 | no | no | 0.52/0.68 | 19/25/0.50 | 0.0 0.0 1.5 | 0.0 0.0 3.0 | 1 1 2 | 0 0 0 | 1 1 2 | 0 0 0 | 34 32 18 | -4 2 16 | 5arm_loop 3arm 3arm | 1 1 1 | 48 14 0 | 0.35 0.40 0.42 | 5 6 6 | 4 | 4 | 6 | 9 |
| reads | miRBase family seed | |||||
| seed | -----------------------------------GUGAUGG------------------------------------------------------------------------------ | 1 | novel | |||
| seed | ---------------------------------------------------------------------------------GACCUGU-------------------------------- | 1 | novel | |||
| seed | ------------------------------------------------------------------------------AGUGACC----------------------------------- | 1 | novel | |||
| seed | ----------------------------------------------------------------UCUGCCA------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S1 | T3S2 | T4S1 | T5S1 | |||
| ---------------------------------------------------------------GTCTGCCAGTATGACAGTGACCTGT-------------------------------- | 25 | 1 | - | - | - | |
| ----------------------------------TGTGATGGGCAGACCCAGGG------------------------------------------------------------------ | 20 | - | - | 1 | - | |
| --------------------------------------------------------------------------------TGACCTGTGGCCTGCCCCTCAG------------------ | 22 | - | - | - | 1 | |
| -----------------------------------------------------------------------------CAGTGACCTGTGGCCTGCC------------------------ | 19 | - | 1 | - | - | |
| rat | gcaaccatgcagatgtccagggggcagattgagcTGTGATGGGCAGACCCAGGGccaggagggGTCTGCCAGTATGACAGTGACCTGTGGCCTGCCCCTCAGgccatcaccattgaggct | |||||
| ************************************************************************************************************************ | ||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000023526 ENSRNOG00000017446 NP_001099792.1 | |||||
| rat | ((....(((..((((.((.((((((((..((.(((((.((.(((((((((...........)))))))))...)).)))))......))..))))))))..)).))))..)))....)). | 0.540 -49.80 | ||||
| rat | chromosome:1:206433992:206434111:-1 | Same_strand|Intronic_coding|ENSRNOT00000023526|ENSRNOG00000017446 ## ENSRNOG00000017446|protein_coding|NP_001099792.1|NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Source:RefSeq_peptide;Acc:NP_001099792] |
novel_lenNOK_multiarm_DicerNOK_5varHIGH_randfoldOK_nonpairedHIGH_bulgeHIGH (2 loci)
sblock2063 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.50/0.63 | 18/20/0.40 | 0.0 1.5 | 0.0 0.8 | 1 4 | 0 0 | 1 2 | 0 0 | 40 33 | -3 2 | 5arm_loop 3arm | 1 1 | nd nd | 0.32 0.45 | 4 9 | 5 | 3 | 5 | 7 |
| reads | miRBase family seed | ||||
| seed | ------------------------------------------------------------------GCCUGCU----------------------------------------------- | 2 | novel | ||
| seed | ---------------------------------------------------------------------UGCUCAG-------------------------------------------- | 2 | novel | ||
| seed | -----------------------------------------UCUGAGC------------------------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| -----------------------------------------------------------------TGCCTGCTCAGACTCCATCA----------------------------------- | 20 | 2 | - | - | |
| ----------------------------------------CTCTGAGCCAGGCTGACAG------------------------------------------------------------- | 19 | - | - | 1 | |
| --------------------------------------------------------------------CTGCTCAGACTCCATCAT---------------------------------- | 18 | - | 1 | - | |
| --------------------------------------------------------------------CTGCTCAGACTCCATCATC--------------------------------- | 19 | - | 1 | - | |
| rat | cctggatacaaagagtcaatgctggtcgcggaggtggagcCTCTGAGCCAGGCTGACAGagcctcTGCCTGCTCAGACTCCATCATCgccaccacctccgggatagtgttgactgcaggt | ||||
| ************************************************************************************************************************ | |||||
| rat | ((((.........((((((((((.(((.(((((((((.((.((((((.(((((.((.......)).)))))))))))..........))..))))))))).))))))))))))).)))). | 0.830 -54.00 | |||
| rat | chromosome:1:168521224:168521343:1 | intergenic |
sblock2569 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.44/0.46 | 18/24/0.67 | 0.0 2.5 | 0.0 0.5 | 1 2 | 0 0 | 1 1 | 0 0 | 14 6 | 10 11 | 5arm 3arm | 1 1 | nd nd | 0.39 0.33 | 5 4 | 3 | 2 | 0 | 5 |
| reads | miRBase family seed | |||
| seed | ---------------UGAUUAU---------------------------------------------------------------------- | 1 | novel | |
| seed | --------------------------------------------------------------CAAGCCA----------------------- | 1 | novel | |
| seed | -------------------------------------------------------------------CAAAUCU------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S2 | |||
| --------------TTGATTATCTGGCTCCCT------------------------------------------------------------ | 18 | 1 | - | |
| -------------------------------------------------------------GCAAGCCAAATCTAATCGAAGCAG------- | 24 | - | 1 | |
| ------------------------------------------------------------------CCAAATCTAATCGAAGCAGG------ | 20 | - | 1 | |
| rat | gtcacaaagaagctTTGATTATCTGGCTCCCTggcagttcctttcatcttgggaacattttGCAAGCCAAATCTAATCGAAGCAGGgtggca | |||
| ******************************************************************************************** | ||||
| rat | (((((......((((((((((..(((((.....(((((((((........))))))....))).)))))....))))))))))...))))). | 1.000 -32.40 | ||
| rat | chromosome:10:7189890:7189981:1 | intergenic |
novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_randfoldOK (2 loci)
sblock10205 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.57/0.68 | 18/21/0.17 | 2.3 1.0 | 1.0 0.7 | 3 3 | 0 0 | 1 2 | 0 0 | 8 0 | 7 21 | 5arm 3arm | 13 14 | nd nd | 0.16 0.37 | 1 6 | 6 | 2 | 10 | 10 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------------CGAGACU------------- | 2 | novel | |
| seed | --------------------------------------------------------------------GACUCCG---------- | 1 | novel | |
| seed | ---------AGAAGGG--------------------------------------------------------------------- | 1 | novel | |
| seed | -----------AAGGGUC------------------------------------------------------------------- | 1 | novel | |
| seed | --------------GGUCUGG---------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T3S2 | |||
| ----------------------------------------------------------------TCGAGACTCCGTGAAGGGC-- | 19 | 2 | - | |
| ----------GAAGGGTCTGGAGTGGGTC-------------------------------------------------------- | 19 | - | 1 | |
| --------AAGAAGGGTCTGGAGTGGGTC-------------------------------------------------------- | 21 | - | 1 | |
| -------------GGGTCTGGAGTGGGTCGCA----------------------------------------------------- | 19 | - | 1 | |
| -------------------------------------------------------------------AGACTCCGTGAAGGGCCG | 18 | - | 1 | |
| rat | aggctccaAAGAAGGGTCTGGAGTGGGTCGCAaccattatttatgatggtagtagcacttactaTCGAGACTCCGTGAAGGGCCG | |||
| ************************************************************************************* | ||||
| rat | .(((((.......((((((.((((((((.((.(((((((....)))))))....))))))))..)).))))))......))))). | 1.000 -30.72 | ||
| rat | chromosome:6:139221050:139221134:-1 | intergenic |
sblock10207 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.63/0.68 | 18/19/0.00 | 1.5 1.0 | 1.5 0.7 | 2 3 | 0 0 | 1 2 | 0 0 | 10 0 | 7 18 | 5arm 3arm | 13 14 | nd nd | 0.21 0.21 | 2 3 | 5 | 2 | 10 | 10 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------------CGAGACU------------- | 2 | novel | |
| seed | --------------------------------------------------------------------GACUCCG---------- | 1 | novel | |
| seed | -----------AAGGGUC------------------------------------------------------------------- | 1 | novel | |
| seed | --------------GGUCUGG---------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T3S2 | |||
| ----------------------------------------------------------------TCGAGACTCCGTGAAGGGC-- | 19 | 2 | - | |
| ----------GAAGGGTCTGGAGTGGGTC-------------------------------------------------------- | 19 | - | 1 | |
| -------------GGGTCTGGAGTGGGTCGCA----------------------------------------------------- | 19 | - | 1 | |
| -------------------------------------------------------------------AGACTCCGTGAAGGGCCG | 18 | - | 1 | |
| rat | aggctccaacGAAGGGTCTGGAGTGGGTCGCAtccattagttatgatggtggtagcacttactaTCGAGACTCCGTGAAGGGCCG | |||
| ************************************************************************************* | ||||
| rat | .(((((..(((..((((((.((((((((.((..((((((.......))))))..))))))))..)).)))))))))...))))). | 1.000 -34.20 | ||
| rat | chromosome:6:139274712:139274796:-1 | intergenic |
novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_randfoldOK_bulgeHIGH (2 loci)
sblock289 [novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.40/0.47 | 19/20/0.14 | 0.0 0.8 | 0.0 0.5 | 3 4 | 0 0 | 1 1 | 0 0 | 17 22 | 3 -2 | 5arm 3arm_loop | 2 20 | nd nd | 0.26 0.26 | 4 4 | 7 | 1 | -2 | -2 |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------GCAGAAC--------------------------------- | 3 | novel |
| seed | ------------------CCACAUU---------------------------------------------------------------- | 3 | novel |
| seed | ----------------------------------------------AUUGCAG------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------------------------------------------------TGCAGAACCTACAGTGTTG---------------------- | 19 | 3 | |
| -----------------TCCACATTCACTGTTCTAG----------------------------------------------------- | 19 | 3 | |
| ---------------------------------------------TATTGCAGAACCTACAGTGT------------------------ | 20 | 1 | |
| rat | tctgttgatgcaggatcTCCACATTCACTGTTCTAGcaaaccaacTATTGCAGAACCTACAGTGTTGgaacaactgcattgtatcagga | ||
| ***************************************************************************************** | |||
| --------------------------------------------------------------------------------------------------- | ENSRNOT00000041575 ENSRNOG00000031160 LOC685793 | ||
| rat | ((((.((((((((....((((....(((((((((.((((........)))))))....)))))).))))....))))))))...)))). | 1.000 -28.40 |
| rat | chromosome:1:50286341:50286429:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000049496|ENSRNOG00000031160 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000041575|ENSRNOG00000031160 ## ENSRNOG00000031160|protein_coding|LOC685793| |
| Back to summary page | other hairpins: | Page 1 | Jump 10 pages back | Previous page | Page 31155 | Next page | Jump 10 pages forward | Page 31204 |
©2008 InteRNA Genomics B.V.