other hairpins
novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_randfoldOK_bulgeHIGH (2 loci)
sblock315 [novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.40/0.47 | 19/20/0.14 | 0.0 0.8 | 0.0 0.5 | 3 4 | 0 0 | 1 1 | 0 0 | 17 22 | 3 -2 | 5arm 3arm_loop | 2 20 | nd nd | 0.26 0.26 | 4 4 | 7 | 1 | -2 | -2 |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------GCAGAAC--------------------------------- | 3 | novel |
| seed | ------------------CCACAUU---------------------------------------------------------------- | 3 | novel |
| seed | ----------------------------------------------AUUGCAG------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------------------------------------------------TGCAGAACCTACAGTGTTG---------------------- | 19 | 3 | |
| -----------------TCCACATTCACTGTTCTAG----------------------------------------------------- | 19 | 3 | |
| ---------------------------------------------TATTGCAGAACCTACAGTGT------------------------ | 20 | 1 | |
| rat | tctgttgatgcaggatcTCCACATTCACTGTTCTAGcaaaccaacTATTGCAGAACCTACAGTGTTGgaacaactgcattgtatcagga | ||
| ***************************************************************************************** | |||
| rat | ((((.((((((((....((((....(((((((((.((((........)))))))....)))))).))))....))))))))...)))). | 1.000 -28.40 |
| rat | chromosome:1:50352667:50352755:-1 | intergenic |
novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH (2 loci)
sblock378 [novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.43/0.60 | 19/25/0.57 | 0.7 0.0 0.0 | 1.3 0.0 0.0 | 3 1 3 | 0 0 0 | 2 1 2 | 0 0 0 | 10 34 0 | 8 -11 39 | 5arm 5arm_loop_3arm 3arm | 19 52 52 | nd nd nd | 0.36 0.75 0.80 | 5 6 16 | 7 | 4 | 0 | -15 |
| reads | miRBase family seed | |||||
| seed | -----------------------------------------------------------------------------------------GCAAAUG------------- | 3 | novel | |||
| seed | -------------ACCCUCU----------------------------------------------------------------------------------------- | 2 | novel | |||
| seed | -----------------------------------GCAGGAC------------------------------------------------------------------- | 1 | novel | |||
| seed | -----------AGACCCU------------------------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T3S2 | T5S1 | |||
| ----------------------------------------------------------------------------------------TGCAAATGCACTGTCTCATGA | 21 | 1 | - | - | 2 | |
| ------------GACCCTCTCAGCAGCTAGA------------------------------------------------------------------------------ | 19 | - | - | - | 2 | |
| ----------TAGACCCTCTCAGCAGCTAGAATTT-------------------------------------------------------------------------- | 25 | - | - | 1 | - | |
| ----------------------------------TGCAGGACCTCTACTGGCAC------------------------------------------------------- | 20 | - | 1 | - | - | |
| rat | ttgcaggacaTAGACCCTCTCAGCAGCTAGAATTTGCAGGACCTCTACTGGCACacaaatcccacagttgctggagctccactgtcacTGCAAATGCACTGTCTCATGA | |||||
| ************************************************************************************************************* | ||||||
| rat | ((((((((((......(((.((((((((...(((((.....((......))....))))).....)))))))))))......)))).))))))................ | 0.830 -29.90 | ||||
| rat | chromosome:1:50834795:50834903:-1 | intergenic |
sblock4542 [novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.53/0.60 | 19/20/0.67 | 0.0 0.0 | 0.0 0.5 | 1 2 | 0 0 | 1 2 | 0 0 | 46 35 | -3 -12 | 5arm_loop 3arm_loop | 4 12 | nd nd | 0.35 0.55 | 4 11 | 3 | 3 | 0 | -28 |
| reads | miRBase family seed | ||||
| seed | ------------------------------------------------------------------UGUGCUG----------------------------------------------- | 2 | novel | ||
| seed | -----------------------------------------------UGUACCG------------------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T3S1 | |||
| ----------------------------------------------CTGTACCGTGGCATCTTCCC------------------------------------------------------ | 20 | 1 | - | - | |
| -----------------------------------------------------------------CTGTGCTGTGTAAGGATGC------------------------------------ | 19 | - | 1 | - | |
| -----------------------------------------------------------------CTGTGCTGTGTAAGGATGCC----------------------------------- | 20 | - | - | 1 | |
| rat | ccgagggctcctatcattgcaatcctcagacgctcaccaggtccatCTGTACCGTGGCATCTTCCCTGTGCTGTGTAAGGATGCCgtacaggatgcctgggctgaggatgttgaccttcg | ||||
| ************************************************************************************************************************ | |||||
| rat | .((((((......(((..((.((((((((.......((((((...(((((((...((((((((..............)))))))))))))))..)))))).))))))))))))))))))) | 0.990 -46.24 | |||
| rat | chromosome:15:109754506:109754625:-1 | intergenic |
novel_lenNOK_multiarm_DicerNOK_Multihit_shortStem_5varHIGH (2 loci)
sblock10029 [novel_lenNOK_multiarm_DicerNOK_Multihit_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.558 | no | no | 0.35/0.53 | 19/20/0.17 | 2.6 0.0 | 2.4 0.0 | 5 1 | 0 0 | 4 1 | 0 0 | 0 2 | 4 20 | 5arm 3arm | 73 88 | nd nd | 0.16 0.37 | 2 3 | 6 | 4 | 5 | 2 |
| reads | miRBase family seed | |||||
| seed | -------AGAUAUG------------------------------------------------------------ | 2 | novel | |||
| seed | --AUGACAG----------------------------------------------------------------- | 1 | novel | |||
| seed | -----ACAGAUA-------------------------------------------------------------- | 1 | novel | |||
| seed | -AAUGACA------------------------------------------------------------------ | 1 | novel | |||
| seed | ------------------------------------------------------UAAGUCU------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T4S2 | T5S1 | |||
| ------CAGATATGACGAGATCCGC------------------------------------------------- | 19 | 2 | - | - | - | |
| TAATGACAGATATGACGAGA------------------------------------------------------ | 20 | - | - | - | 1 | |
| -AATGACAGATATGACGAGA------------------------------------------------------ | 19 | - | 1 | - | - | |
| ----GACAGATATGACGAGATCC--------------------------------------------------- | 19 | - | - | 1 | - | |
| -----------------------------------------------------CTAAGTCTGTGGCTCGCAT-- | 19 | - | - | - | 1 | |
| rat | TAATGACAGATATGACGAGATCCGCccccactggggaggcaacatcctgggtcCTAAGTCTGTGGCTCGCATtg | |||||
| ************************************************************************** | ||||||
| ------------------------------------------------------------------------------------ | ENSRNOT00000006729 ENSRNOG00000004873 Prkch | |||||
| rat | (((((..((.((((((..(((((((((((....))).)))........)))))....))).))).))..))))) | 0.610 -19.10 | ||||
| rat | chromosome:6:96238291:96238364:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000006729|ENSRNOG00000004873 ## ENSRNOG00000004873|protein_coding|Prkch|Protein kinase C eta type (EC 2.7.11.13) (nPKC-eta) (PKC-L). [Source:UniProtKB/Swiss-Prot;Acc:Q64617] |
sblock170 [novel_lenNOK_multiarm_DicerNOK_Multihit_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.016 | no | no | 0.54/0.58 | 18/24/0.43 | 0.0 1.8 | 0.0 0.0 | 1 6 | 0 0 | 1 2 | 0 0 | 2 0 | 22 21 | 5arm 3arm | 1 27 | nd nd | 0.33 0.21 | 3 3 | 7 | 3 | -2 | 2 |
| reads | miRBase family seed | ||||
| seed | ----------------------------------------------------------------------------CUCACAG----------- | 3 | novel | ||
| seed | -----------------------------------------------------------------------CCAUUCU---------------- | 2 | novel | ||
| seed | ---------------------------------------------------------------------------UCUCACA------------ | 1 | novel | ||
| seed | ---UGGAGCU------------------------------------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S2 | T5S1 | |||
| ---------------------------------------------------------------------------TCTCACAGGACCTCCAGTG | 19 | - | - | 3 | |
| ----------------------------------------------------------------------TCCATTCTCACAGGACCTCCAGTG | 24 | 1 | - | 1 | |
| --------------------------------------------------------------------------TTCTCACAGGACCTCCAGTG | 20 | - | - | 1 | |
| --CTGGAGCTCTCCTATCAG-------------------------------------------------------------------------- | 18 | - | 1 | - | |
| rat | taCTGGAGCTCTCCTATCAGaggacatttacatttgctgtacttccagtgtcacagctgttaccagaaccTCCATTCTCACAGGACCTCCAGTG | ||||
| ********************************************************************************************** | |||||
| rat | ((((((((...((((...((((((..(((......(((((((.......)).)))))........)))..)))..)))...)))).)))))))) | 0.590 -24.34 | |||
| rat | chromosome:1:49004338:49004431:-1 | intergenic |
novel_lenNOK_multiarm_DicerNOK_loopOverlap_mirtron_bulgeHIGH (2 loci)
sblock1763 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_mirtron_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.040 | no | no | 0.58/0.74 | 19/24/0.67 | 0.0 0.0 | 0.0 1.0 | 1 2 | 0 0 | 1 2 | 0 0 | 16 27 | 10 -3 | 5arm 3arm_loop | 1 1 | 34 1 | 0.29 0.48 | 4 6 | 3 | 2 | 0 | 11 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------CCCUGGC---------------------------------------- | 2 | novel | |
| seed | -----------------UGGAUGG---------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S1 | |||
| ----------------------------------------------------TCCCTGGCTCCCCCTCCAC----------------------------- | 19 | - | 1 | |
| ----------------------------------------------------TCCCTGGCTCCCCCTCCACCA--------------------------- | 21 | 1 | - | |
| ----------------CTGGATGGTGAGTGTCTGGGGTGA------------------------------------------------------------ | 24 | 1 | - | |
| rat | tggggcggttccatccCTGGATGGTGAGTGTCTGGGGTGAtcacagtgagacTCCCTGGCTCCCCCTCCACCAggcttcaccattatcattgaacccttt | |||
| **************************************************************************************************** | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000024246 ENSRNOG00000017753 Ercc2 | |||
| rat | .((((.(((((........(((((((((.((((((((.......(((.((.....)).)))......)).)))))))))))))))......))))))))) | 0.910 -35.06 | ||
| rat | chromosome:1:78907553:78907652:1 | Same_strand|Intronic_coding|ENSRNOT00000024246|ENSRNOG00000017753 ## ENSRNOG00000017753|protein_coding|Ercc2|excision repair cross-complementing rodent repair deficiency, complementation group 2 Gene [Source:MGI (curated);Acc:Ercc2-002] |
sblock819 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_mirtron_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.424 | no | no | 0.44/0.64 | 18/22/0.33 | 0.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 12 11 | 4 -5 | 5arm 3arm_loop | 1 1 | 29 2 | 0.39 0.27 | 4 4 | 3 | 2 | 0 | 3 |
| reads | miRBase family seed | |||
| seed | -------------GGGACAU------------------------------------------------ | 2 | novel | |
| seed | ------------------------------------CACCGGG------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ------------TGGGACATCTAGGGAATT-------------------------------------- | 18 | - | 2 | |
| -----------------------------------TCACCGGGCCTCTCTGTTCCTC----------- | 22 | 1 | - | |
| rat | ggaagggcaagaTGGGACATCTAGGGAATTgttccTCACCGGGCCTCTCTGTTCCTCagctcaagcca | |||
| ******************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>> | ENSRNOT00000026867 ENSRNOG00000019730 Inppl1 | |||
| rat | ((..((((..((.(((((....(((((...((((......)))).)))))))))))).))))...)). | 0.770 -18.00 | ||
| rat | chromosome:1:159282232:159282299:-1 | Same_strand|Intronic_coding|ENSRNOT00000026867|ENSRNOG00000019730 ## ENSRNOG00000019730|protein_coding|Inppl1|Phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase 2 (EC 3.1.3.n1) (SH2 domain-containing inositol-5'-phosphatase 2) (SHIP-2) (Inositol polyphosphate phosphatase-like protein 1) (INPPL-1). [Source:UniProtKB/Swiss-Prot;Acc:Q9WVR3] |
novel_lenNOK_multiarm_DicerNOK_loopOverlap_mirtron_nonpairedHIGH (2 loci)
sblock2056 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.781 | no | no | 0.63/0.78 | 18/21/0.33 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 11 25 24 | 11 -6 -2 | 5arm 5arm_loop_3arm 3arm_loop | 1 1 1 | 17 3 14 | 0.33 0.43 0.47 | 3 4 6 | 3 | 2 | 0 | -15 |
| reads | miRBase family seed | |||
| seed | ------------CUGCGAC------------------------------------------------------------------ | 1 | novel | |
| seed | --------------------------CCGGUGA---------------------------------------------------- | 1 | novel | |
| seed | -------------------------------------------UUCCGCG----------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S1 | |||
| ------------------------------------------GTTCCGCGCCCTGTTCCAT------------------------ | 19 | - | 1 | |
| -----------CCTGCGACCCGAGTCCCG-------------------------------------------------------- | 18 | 1 | - | |
| -------------------------CCCGGTGAGTGCGGGTAGTTC--------------------------------------- | 21 | - | 1 | |
| rat | cggagaagccgCCTGCGACCCGAGTCCCGGTGAGTGCGGGTAGTTCCGCGCCCTGTTCCATgctggtcttgcaaacctgtctctg | |||
| ************************************************************************************* | ||||
| ...................>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000025906 ENSRNOG00000018993 Ilk | |||
| rat | ((((((.......(((((((..(((...((...(((((((....)))))))......))..)))))))..)))......)))))) | 0.400 -25.82 | ||
| rat | chromosome:1:163481285:163481369:1 | Same_strand|Boundary_non-coding|ENSRNOT00000025906|ENSRNOG00000018993 ## Same_strand|Intronic_non-coding|ENSRNOT00000025906|ENSRNOG00000018993 ## ENSRNOG00000018993|protein_coding|Ilk|Integrin-linked protein kinase (EC 2.7.11.1). [Source:UniProtKB/Swiss-Prot;Acc:Q99J82] |
sblock3266 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.724 | no | no | 0.58/0.64 | 19/22/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 14 19 | 0 -6 | 5arm 3arm_loop | 1 1 | 24 0 | 0.32 0.50 | 2 5 | 2 | 2 | 0 | -6 |
| reads | miRBase family seed | |||
| seed | ---------------UUUUGGU------------------------------------------------------ | 1 | novel | |
| seed | ------------------------------------CGUUCCG--------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T3S2 | |||
| -----------------------------------TCGTTCCGGGCGGCTGAAACAG------------------- | 22 | - | 1 | |
| --------------CTTTTGGTTGGTGCTCCCG------------------------------------------- | 19 | 1 | - | |
| rat | cggaagcggaagtcCTTTTGGTTGGTGCTCCCGcgTCGTTCCGGGCGGCTGAAACAGcggagacttcttgcgcgcc | |||
| **************************************************************************** | ||||
| -------------------------------------------------------------------------------------- | ENSRNOT00000057959 ENSRNOG00000001061 MGC94142 | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000001387 ENSRNOG00000001043 Ddx55 | |||
| .................................................................................>>>>> | ENSRNOT00000036022 ENSRNOG00000001043 Ddx55 | |||
| rat | .((..(((((((((...((.((((..(((((((........)))).))).....)))).))))))))).))...)) | 0.940 -25.80 | ||
| rat | chromosome:12:33162926:33163001:-1 | Same_strand|Intronic_coding|ENSRNOT00000001387|ENSRNOG00000001043 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000001403|ENSRNOG00000001061 ## Opposite_strand|Intronic_coding|ENSRNOT00000057959|ENSRNOG00000001061 ## Same_strand|Boundary_non-coding|ENSRNOT00000036022|ENSRNOG00000001043 ## ENSRNOG00000001043|protein_coding|Ddx55|DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 Gene [Source:MGI (curated);Acc:Ddx55-002] ## ENSRNOG00000001061|protein_coding|MGC94142|similar to cDNA sequence BC003324 (MGC94142), mRNA [Source:RefSeq_dna;Acc:NM_001004205] |
novel_lenNOK_multiarm_DicerNOK_loopOverlap_mirtron_nonpairedHIGH_bulgeHIGH (2 loci)
sblock2130 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_mirtron_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.336 | no | no | 0.58/0.67 | 19/21/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 12 18 | 0 -2 | 5arm 3arm_loop | 1 1 | 24 0 | 0.32 0.38 | 4 5 | 2 | 1 | -2 | -2 |
| reads | miRBase family seed | ||
| seed | -----------------------------------UGUGCCU------------------------------- | 1 | novel |
| seed | -------------UCCCAGG----------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| ----------------------------------CTGTGCCTCTCCCTCCTGCAG------------------ | 21 | 1 | |
| ------------TTCCCAGGGTCTTAGGTGC------------------------------------------ | 19 | 1 | |
| rat | cagaaagcatccTTCCCAGGGTCTTAGGTGCtgaCTGTGCCTCTCCCTCCTGCAGatcttcgagatgattctg | ||
| ************************************************************************* | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000027760 ENSRNOG00000020451 Cd81 | ||
| rat | (((((..((((..((.(((((....((((((.....)))))).....)))))..)).......)))).))))) | 0.480 -17.20 |
| rat | chromosome:1:203342415:203342487:1 | Same_strand|Intronic_coding|ENSRNOT00000027760|ENSRNOG00000020451 ## ENSRNOG00000020451|protein_coding|Cd81|CD81 antigen (26 kDa cell surface protein TAPA-1) (Target of the antiproliferative antibody 1). [Source:UniProtKB/Swiss-Prot;Acc:Q62745] |
| Back to summary page | other hairpins: | Page 1 | Jump 10 pages back | Previous page | Page 31156 | Next page | Jump 10 pages forward | Page 31204 |
©2008 InteRNA Genomics B.V.