other hairpins
novel_lenNOK_multiarm_DicerNOK_loopOverlap_mirtron_nonpairedHIGH_bulgeHIGH (2 loci)
sblock3617 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_mirtron_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.221 | no | no | 0.45/0.55 | 19/25/0.50 | 0.0 1.0 0.0 | 0.0 1.5 0.0 | 4 2 1 | 0 0 0 | 1 1 1 | 0 0 0 | 9 24 11 | -4 -17 2 | 5arm_loop_3arm 5arm_loop_3arm 3arm | 2 2 2 | 0 15 27 | 0.44 0.40 0.50 | 4 4 5 | 10 | 1 | 0 | 3 |
| reads | miRBase family seed | ||
| seed | ----------GUCAGCC-------------------------------------------------- | 5 | novel |
| seed | -------------------CAGUCUC----------------------------------------- | 1 | novel |
| seed | ---------------------------AGAACCU--------------------------------- | 1 | novel |
| seed | ----------------CAUCAGU-------------------------------------------- | 1 | novel |
| seed | -------------------------------------GCCCACG----------------------- | 1 | novel |
| seed | -------------------------CUAGAAC----------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ---------TGTCAGCCATCAGTCTCTAGAACCT--------------------------------- | 25 | 4 | |
| ------------------------------------TGCCCACGACATTGACCTCA----------- | 20 | 1 | |
| --------------------------TAGAACCTTCTGCCCACGACA-------------------- | 21 | 1 | |
| ---------TGTCAGCCATCAGTCTCTA--------------------------------------- | 19 | 1 | |
| ------------------TCAGTCTCTAGAACCTTCTG----------------------------- | 20 | 1 | |
| ------------------------TCTAGAACCTTCTGCCCACG----------------------- | 20 | 1 | |
| ---------------CCATCAGTCTCTAGAACCTTCTG----------------------------- | 23 | 1 | |
| rat | gggacgggaTGTCAGCCATCAGTCTCTAGAACCTtctgcccacgacattgacctcattcactgtcct | ||
| ******************************************************************* | |||
| >>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000056932 ENSRNOG00000037566 RGD1560398_predicted | ||
| rat | (((((((((.(((((...((.((...((((....))))...))))..))))).....)).))))))) | 0.410 -14.50 |
| rat | chromosome:12:43046999:43047065:1 | Same_strand|Intronic_non-coding|ENSRNOT00000056932|ENSRNOG00000037566 ## Same_strand|Boundary_non-coding|ENSRNOT00000056932|ENSRNOG00000037566 ## ENSRNOG00000037566|protein_coding|RGD1560398_predicted| |
novel_lenNOK_multiarm_DicerNOK_loopOverlap_mirtron_randfoldOK (2 loci)
sblock4464 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.44/0.61 | 18/23/0.67 | 0.0 0.0 0.0 | 0.0 0.0 1.7 | 1 2 6 | 0 0 0 | 1 1 5 | 0 0 0 | 31 38 15 | 2 -10 8 | 5arm 3arm_loop 3arm | 1 1 1 | 29 21 0 | 0.25 0.56 0.13 | 2 9 1 | 9 | 5 | 0 | -12 |
| reads | miRBase family seed | ||||||
| seed | -------------------------------------------------------------------------AUUCUCU------------------------------ | 6 | novel | ||||
| seed | -------------------------------------------------------AGCCAAG------------------------------------------------ | 2 | novel | ||||
| seed | --------------------------------UGGAUGG----------------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S1 | T3S2 | T4S1 | |||
| ------------------------------------------------------AAGCCAAGAACTGAACTC-------------------------------------- | 18 | - | 2 | - | - | - | |
| ------------------------------------------------------------------------TATTCTCTCGGCCTCCTCCA------------------ | 20 | - | - | - | 1 | 1 | |
| ------------------------------------------------------------------------TATTCTCTCGGCCTCCTCCAG----------------- | 21 | - | 1 | 1 | - | - | |
| ------------------------------------------------------------------------TATTCTCTCGGCCTCCTCCAGGC--------------- | 23 | 1 | - | - | - | - | |
| -------------------------------GTGGATGGAGGAGAGGGTGT----------------------------------------------------------- | 20 | - | - | 1 | - | - | |
| ------------------------------------------------------------------------TATTCTCTCGGCCTCCTCC------------------- | 19 | 1 | - | - | - | - | |
| rat | tatgtgagtatggagtgagcttctgaggggaGTGGATGGAGGAGAGGGTGTaggAAGCCAAGAACTGAACTCTATTCTCTCGGCCTCCTCCAGGCtgagcttcatcacat | ||||||
| ************************************************************************************************************** | |||||||
| >>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000026279 ENSRNOG00000019246 Psme2 | ||||||
| rat | .((((((...((((((.(((((..((((((.((.((..(((((.(((((.(((...........))).))))).))))))).)))))))).)))))..)))))))))))) | 0.980 -42.00 | |||||
| rat | chromosome:15:33723058:33723167:-1 | Same_strand|Intronic_coding|ENSRNOT00000026279|ENSRNOG00000019246 ## Same_strand|Boundary_coding|ENSRNOT00000026279|ENSRNOG00000019246 ## ENSRNOG00000019246|protein_coding|Psme2|Proteasome activator complex subunit 2 (Proteasome activator 28 subunit beta) (PA28beta) (PA28b) (Activator of multicatalytic protease subunit 2) (11S regulator complex subunit beta) (REG-beta). [Source:UniProtKB/Swiss-Prot;Acc:Q63798] |
sblock4853 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.50/0.54 | 19/24/0.67 | 0.7 0.0 | 2.3 0.8 | 3 6 | 0 0 | 1 2 | 0 0 | 35 22 | -5 9 | 5arm_loop_3arm 3arm | 1 2 | 32 0 | 0.26 0.32 | 2 2 | 9 | 2 | 8 | 10 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------------------CACUGCU------------------------------------- | 6 | novel | |
| seed | ------------------------------------GUGGGAU------------------------------------------------------------------------ | 2 | novel | |
| seed | --------------------------------------GGGAUAG---------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| ----------------------------------------------------------------------TCACTGCTCCTCTGTCTCTGT------------------------ | 21 | 1 | 2 | |
| -----------------------------------AGTGGGATAGAGTCAGCAG------------------------------------------------------------- | 19 | 2 | - | |
| -------------------------------------TGGGATAGAGTCAGCAGGCAGAGT------------------------------------------------------ | 24 | 1 | - | |
| ----------------------------------------------------------------------TCACTGCTCCTCTGTCTCTGTAG---------------------- | 23 | - | 1 | |
| ----------------------------------------------------------------------TCACTGCTCCTCTGTCTCT-------------------------- | 19 | 1 | - | |
| ----------------------------------------------------------------------TCACTGCTCCTCTGTCTCTGTA----------------------- | 22 | 1 | - | |
| rat | tcagagtgcctctccgcttgagtggacagtgtggcAGTGGGATAGAGTCAGCAGGCAGAGTgtgtgtgacTCACTGCTCCTCTGTCTCTGTAGgcttccggagccaggactttga | |||
| ******************************************************************************************************************* | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000022865 ENSRNOG00000016645 Sfmbt1 | |||
| rat | (((((((.((((((((...((((..((((...(((((.((..((((((((.((.((.....)).))))))))..))..)).))))).))))..)))).)))))..)))))))))) | 1.000 -48.80 | ||
| rat | chromosome:16:6210782:6210896:1 | Same_strand|Intronic_coding|ENSRNOT00000022865|ENSRNOG00000016645 ## ENSRNOG00000016645|protein_coding|Sfmbt1|Scm-like with four MBT domains protein 1. [Source:UniProtKB/Swiss-Prot;Acc:Q9JMD2] |
novel_lenNOK_multiarm_DicerOK_5varHIGH_loopOverlap (2 loci)
sblock1346 [novel_lenNOK_multiarm_DicerOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.360 | no | no | 0.39/0.53 | 18/22/0.33 | 1.5 0.0 1.0 0.0 | 1.5 0.0 0.0 0.0 | 2 1 2 1 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 7 32 54 29 | 28 3 -17 4 | 5arm 5arm 5arm_loop_3arm 3arm | 4 4 4 5 | nd nd nd nd | 0.47 0.27 0.55 0.11 | 4 3 11 2 | 6 | 1 | 1 | 2 |
| reads | miRBase family seed | ||
| seed | ---------------------------------CGAAGCC-------------------------------------------------------------------------------- | 1 | novel |
| seed | ---------------------------------------------------------GUUGUCU-------------------------------------------------------- | 1 | novel |
| seed | -------------------------------------------------------CUGUUGU---------------------------------------------------------- | 1 | novel |
| seed | -----------GACUCAA------------------------------------------------------------------------------------------------------ | 1 | novel |
| seed | -------------------------------------------------------------------------GCUAAAG---------------------------------------- | 1 | novel |
| seed | --------GAAGACU--------------------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------------------------------------------------------TCTGTTGTCTTTTGGGAATG---------------------------------------------- | 20 | 1 | |
| -------GGAAGACTCAATGAGCCGA---------------------------------------------------------------------------------------------- | 19 | 1 | |
| --------------------------------TCGAAGCCTCACTTTGTGGTGT------------------------------------------------------------------ | 22 | 1 | |
| ----------AGACTCAATGAGCCGATAG------------------------------------------------------------------------------------------- | 19 | 1 | |
| --------------------------------------------------------TGTTGTCTTTTGGGAATG---------------------------------------------- | 18 | 1 | |
| ------------------------------------------------------------------------TGCTAAAGTCCAGGTGAAG----------------------------- | 19 | 1 | |
| rat | agcgcctGGAAGACTCAATGAGCCGATAGcctTCGAAGCCTCACTTTGTGGTGTTCTGTTGTCTTTTGGGAATGCTAAAGTCCAGGTGAAGgcatgcggtcagaaggataactctagtgt | ||
| ************************************************************************************************************************ | |||
| rat | .(((.(((((....((..(((.(((...((((((...((((.((((..(((((((((...........)))))))))))))..))))))))))...))))))....))....)))))))) | 0.990 -34.40 |
| rat | chromosome:1:47971407:47971526:1 | intergenic |
sblock6563 [novel_lenNOK_multiarm_DicerOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.226 | no | no | 0.32/0.65 | 18/20/0.50 | 1.3 0.0 0.0 | 1.0 0.0 1.0 | 3 1 2 | 0 0 0 | 1 1 2 | 0 0 0 | 37 33 6 | -2 2 28 | 5arm_loop 3arm 3arm | 1 1 1 | nd nd nd | 0.40 0.37 0.28 | 4 5 2 | 6 | 2 | 2 | 1 |
| reads | miRBase family seed | |||
| seed | --------------------------------------AGCUUGG--------------------------------------------------------------------------- | 2 | novel | |
| seed | -----------------------------------------------------------------------------------------------CGGCCUC------------------ | 2 | novel | |
| seed | ------------------------------------------UGGUUAU----------------------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------------------------------AAGUGUC-------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S2 | |||
| -------------------------------------GAGCTTGGTTATAAAATGTG--------------------------------------------------------------- | 20 | 2 | - | |
| ----------------------------------------------------------------------------------------------GCGGCCTCTCTTTCACCT-------- | 18 | 1 | - | |
| -----------------------------------------TTGGTTATAAAATGTGGTC------------------------------------------------------------ | 19 | 1 | - | |
| ----------------------------------------------------------------------------------------------GCGGCCTCTCTTTCACCTGG------ | 20 | - | 1 | |
| --------------------------------------------------------------------CAAGTGTCCGTGTAACTCC--------------------------------- | 19 | - | 1 | |
| rat | ttggggcaggtccatgggagggcaacaaattgcttagGAGCTTGGTTATAAAATGTGGTCtcgaatccCAAGTGTCCGTGTAACTCCtgattttGCGGCCTCTCTTTCACCTGGtttgaa | |||
| ************************************************************************************************************************ | ||||
| rat | (((((.(((((....((((((((..((((....(((((((..(((.(((....((.((........)))).))).))).....))))))).))))..))).)))))..))))).))))). | 0.990 -33.80 | ||
| rat | chromosome:2:191941696:191941815:1 | intergenic |
novel_lenNOK_multiarm_DicerOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (2 loci)
sblock11373 [novel_lenNOK_multiarm_DicerOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.584 | no | no | 0.50/0.67 | 18/25/0.56 | 0.0 1.5 1.5 | 0.0 1.5 0.5 | 1 4 4 | 0 0 0 | 1 2 1 | 0 0 0 | 4 26 6 | 10 -14 15 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.36 0.33 0.52 | 3 5 6 | 9 | 3 | 2 | 1 |
| reads | miRBase family seed | ||||
| seed | ---------------------------GAGUAUA----------------------------------------------------- | 3 | novel | ||
| seed | ---------------------------------------------------------GCUGCGU----------------------- | 2 | novel | ||
| seed | ------------------------------------------------------------GCGUGUU-------------------- | 2 | novel | ||
| seed | -----CAGAGCC--------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------AGGCAUC----------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T3S1 | T5S1 | |||
| -----------------------------------------------------------TGCGTGTTTTCCCAGGGCAGA------- | 21 | - | - | 2 | |
| --------------------------------------------------------TGCTGCGTGTTTTCCCAGGGCAGAC------ | 25 | - | - | 2 | |
| --------------------------TGAGTATAGGCATCCCCTGGAGG-------------------------------------- | 23 | - | - | 2 | |
| --------------------------TGAGTATAGGCATCCCCT------------------------------------------- | 18 | 1 | - | - | |
| --------------------------------TAGGCATCCCCTGGAGGC------------------------------------- | 18 | - | - | 1 | |
| ----TCAGAGCCAATGGGGGACCAGC------------------------------------------------------------- | 22 | - | 1 | - | |
| rat | ccccTCAGAGCCAATGGGGGACCAGCTGAGTATAGGCATCCCCTGGAGGCttcagcTGCTGCGTGTTTTCCCAGGGCAGACggatgg | ||||
| *************************************************************************************** | |||||
| rat | .((.((...(((...((..((((((((((((.((((.....))))...))).))))))......)))..))...))).)).)).... | 0.850 -29.60 | |||
| rat | chromosome:7:112746224:112746310:1 | intergenic |
sblock8564 [novel_lenNOK_multiarm_DicerOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.106 | no | no | 0.47/0.71 | 19/21/0.45 | 0.0 0.0 1.5 0.0 | 0.0 0.0 1.2 0.8 | 1 1 4 5 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 2 20 18 0 | 3 -15 -8 12 | 5arm 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 1 | nd nd nd nd | 0.32 0.47 0.50 0.47 | 5 9 6 4 | 11 | 1 | 3 | 2 |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------CCUCCGU------------- | 5 | novel |
| seed | -----------------------------CCUAGGA------------------------------ | 2 | novel |
| seed | --------------------------CUUCCUA--------------------------------- | 2 | novel |
| seed | ---GAGAACC-------------------------------------------------------- | 1 | novel |
| seed | ---------------------UCUAUCU-------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ---------------------------------------------TCCTCCGTGGCCCAAGACC-- | 19 | 3 | |
| -------------------------TCTTCCTAGGAGCTGGACCA--------------------- | 20 | 2 | |
| ---------------------------------------------TCCTCCGTGGCCCAAGACCGC | 21 | 2 | |
| --------------------CTCTATCTTCCTAGGAGCT--------------------------- | 19 | 1 | |
| --TGAGAACCAGGGAGGCAGC--------------------------------------------- | 19 | 1 | |
| ----------------------------TCCTAGGAGCTGGACCATC------------------- | 19 | 1 | |
| ----------------------------TCCTAGGAGCTGGACCATCC------------------ | 20 | 1 | |
| rat | ccTGAGAACCAGGGAGGCAGCTCTATCTTCCTAGGAGCTGGACCATCCTCCGTGGCCCAAGACCGC | ||
| ****************************************************************** | |||
| rat | .((.....(((.((((((((((((.........)))))))......))))).)))....))..... | 1.000 -22.40 |
| rat | chromosome:4:122194907:122194972:-1 | intergenic |
novel_lenNOK_multiarm_DicerOK_5varHIGH_nonpairedHIGH (2 loci)
sblock1993 [novel_lenNOK_multiarm_DicerOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.649 | no | no | 0.37/0.42 | 19/24/0.29 | 2.0 0.0 | 0.5 0.0 | 4 3 | 0 0 | 1 2 | 0 0 | 10 7 | 9 11 | 5arm 3arm | 1 1 | nd nd | 0.32 0.32 | 3 4 | 7 | 2 | 2 | 1 |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------CCAGGAU------------------ | 3 | novel | |
| seed | -----------ACCUGCU---------------------------------------------------------------------- | 2 | novel | |
| seed | ---------------GCUGAUA------------------------------------------------------------------ | 2 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| --------------------------------------------------------------TCCAGGATTCAGTATCTAG------- | 19 | 1 | 2 | |
| ----------TACCTGCTGATATTCTTGATCAGG------------------------------------------------------ | 24 | - | 2 | |
| --------------TGCTGATATTCTTGATCAG------------------------------------------------------- | 19 | - | 2 | |
| rat | gtggcgggcgTACCTGCTGATATTCTTGATCAGGcattccaggaaattaagtctgccccaccTCCAGGATTCAGTATCTAGcttgacg | |||
| **************************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000016427 ENSRNOG00000012031 St8sia2 | |||
| rat | ....(((((.....((((((...(((((...(((.....((((........)))).....))).))))).))))))....)))))... | 0.860 -20.70 | ||
| rat | chromosome:1:129045764:129045851:1 | Same_strand|Intronic_coding|ENSRNOT00000016427|ENSRNOG00000012031 ## ENSRNOG00000012031|protein_coding|St8sia2|Alpha-2,8-sialyltransferase 8B (EC 2.4.99.-) (ST8Sia II) (Sialyltransferase X) (STX). [Source:UniProtKB/Swiss-Prot;Acc:Q07977] |
sblock760 [novel_lenNOK_multiarm_DicerOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.651 | no | no | 0.26/0.48 | 19/23/0.25 | 2.0 0.0 | 0.7 0.0 | 3 1 | 0 0 | 1 1 | 0 0 | 4 10 | 4 10 | 5arm 3arm | 1 1 | nd nd | 0.35 0.42 | 3 3 | 4 | 1 | 1 | 1 |
| reads | miRBase family seed | ||
| seed | -----------GGUCUCA---------------------------------------------------------- | 2 | novel |
| seed | -----GGGAAAG---------------------------------------------------------------- | 1 | novel |
| seed | ------------------------------------------------CCAAGAA--------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----------AGGTCTCATTTGCTCAGAT----------------------------------------------- | 19 | 2 | |
| ----TGGGAAAGGTCTCATTTGCTCAG------------------------------------------------- | 23 | 1 | |
| -----------------------------------------------TCCAAGAAAGTGTTATATA---------- | 19 | 1 | |
| rat | tgttTGGGAAAGGTCTCATTTGCTCAGATtacccacaggttacttgtTCCAAGAAAGTGTTATATAtttcaaatac | ||
| **************************************************************************** | |||
| -------------------------------------------------------------------------------------- | ENSRNOT00000016427 ENSRNOG00000012031 St8sia2 | ||
| rat | (((((((((...((..(((((.((..((..(((....))).......))..)).)))))..))...))))))))). | 0.760 -10.80 |
| rat | chromosome:1:129016794:129016869:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000016427|ENSRNOG00000012031 ## ENSRNOG00000012031|protein_coding|St8sia2|Alpha-2,8-sialyltransferase 8B (EC 2.4.99.-) (ST8Sia II) (Sialyltransferase X) (STX). [Source:UniProtKB/Swiss-Prot;Acc:Q07977] |
novel_lenNOK_multiarm_DicerOK_bulgeHIGH (2 loci)
sblock2204 [novel_lenNOK_multiarm_DicerOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.582 | no | no | 0.53/0.75 | 19/20/0.67 | 0.0 0.0 | 0.0 0.0 | 1 2 | 0 0 | 1 2 | 0 0 | 13 8 | 20 33 | 5arm 3arm | 1 2 | nd nd | 0.21 0.30 | 4 3 | 3 | 3 | 1 | 3 |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------------------------------------------------------------GGGGGUU-------------------- | 2 | novel | ||
| seed | --------------UCCACAA--------------------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S1 | T4S2 | |||
| --------------------------------------------------------------------------------------------TGGGGGTTGGGGTGGAGGGG-------- | 20 | 1 | 1 | - | |
| -------------TTCCACAAGAAGCCTCGAC---------------------------------------------------------------------------------------- | 19 | - | - | 1 | |
| rat | tactgtggccagtTTCCACAAGAAGCCTCGACttgaccaaagacagtaagcatttgggctgcttttctatctgctcaaggcaagtttcctgaTGGGGGTTGGGGTGGAGGGGatggagta | ||||
| ************************************************************************************************************************ | |||||
| rat | ((((.((.((...((((((....((((((((((((.((..(((.((.(((((.......)))))..)).)))......))))))))........))))))...)))))).)).)).)))) | 0.470 -32.70 | |||
| rat | chromosome:1:240563888:240564007:1 | intergenic |
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