other hairpins
novel_lenNOK_multiarm_DicerOK_bulgeHIGH (2 loci)
sblock9212 [novel_lenNOK_multiarm_DicerOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.089 | no | no | 0.53/0.58 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 11 13 | 1 6 | 5arm 3arm | 1 1 | nd nd | 0.26 0.47 | 4 3 | 3 | 2 | 3 | 1 |
| reads | miRBase family seed | |||
| seed | ------------GGUCUGA------------------------------------------------------ | 2 | novel | |
| seed | ------------------------------------------CCCUGCA------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| -----------GGGTCTGAAGCACCGAGAA------------------------------------------- | 19 | 2 | - | |
| -----------------------------------------ACCCTGCAGTTCACACCAT------------- | 19 | - | 1 | |
| rat | gggatgtaggaGGGTCTGAAGCACCGAGAAgagcacttcacACCCTGCAGTTCACACCATttttctacaccta | |||
| ************************************************************************* | ||||
| rat | (((.(((((((.(((.(((((((....((((....))))......)))..)))).)))....)))))))))). | 0.960 -19.70 | ||
| rat | chromosome:4:173473122:173473194:1 | intergenic |
novel_lenNOK_multiarm_DicerOK_shortStem_nonpairedHIGH (2 loci)
sblock2079 [novel_lenNOK_multiarm_DicerOK_shortStem_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.234 | no | no | 0.39/0.42 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 4 3 | 21 20 | 5arm 3arm | 1 1 | nd nd | 0.37 0.33 | 3 2 | 3 | 1 | 3 | 1 |
| reads | miRBase family seed | ||
| seed | -----CCCAGAA---------------------------------------------------------------------------------- | 2 | novel |
| seed | --------------------------------------------------------------------------UUCACAG------------- | 1 | novel |
| len | cloning frequencies | ||
| T2S1 | |||
| ----TCCCAGAACTGAAAAGGAT----------------------------------------------------------------------- | 19 | 2 | |
| -------------------------------------------------------------------------CTTCACAGTATCAGGTAA--- | 18 | 1 | |
| rat | gtgtTCCCAGAACTGAAAAGGATtgtgcacagaccctacaagcttcctctcctagctatagtctacctgtgtcCTTCACAGTATCAGGTAAgac | ||
| ********************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000055083 ENSRNOG00000014976 LOC246263 | ||
| rat | ((.((.((.((((((..((((.....((((((...(((..((((.........)))).))).....))))))))))..)))).)).)).)).)) | 0.720 -20.10 |
| rat | chromosome:1:177899644:177899737:1 | Same_strand|Boundary_non-coding|ENSRNOT00000020587|ENSRNOG00000014976 ## Same_strand|Intronic_coding|ENSRNOT00000055083|ENSRNOG00000014976 ## ENSRNOG00000014976|protein_coding|LOC246263|Acyl-coenzyme A synthetase ACSM2, mitochondrial precursor (EC 6.2.1.2) (Acyl-CoA synthetase medium-chain family member 2) (Middle-chain acyl- CoA synthetase 2) (Butyrate--CoA ligase 2) (Butyryl coenzyme A synthetase 2) (Kidney-specific protein KS). [Source:UniProtKB/Swiss-Prot;Acc:O70490] |
sblock666 [novel_lenNOK_multiarm_DicerOK_shortStem_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.809 | no | no | 0.56/0.67 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 4 0 | 15 19 | 5arm 3arm | 1 1 | nd nd | 0.33 0.35 | 3 3 | 2 | 2 | 3 | 3 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------GCCUGAG---------- | 1 | novel | |
| seed | -----GAGCCCC------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| ----TGAGCCCCTTGGAAGTGA--------------------------------------------------------- | 18 | - | 1 | |
| -------------------------------------------------------------CGCCTGAGACCCTCCTGA | 18 | 1 | - | |
| rat | ctagTGAGCCCCTTGGAAGTGAggaggtagagaagtgtccctcgattccagtcctctaccaCGCCTGAGACCCTCCTGA | |||
| ******************************************************************************* | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000014351 ENSRNOG00000010775 Arrdc4 | |||
| rat | .(((.(((...(((((..(((.(((((....(((.((.....)).)))....)))))..)))..)))))...)))))). | 0.680 -18.50 | ||
| rat | chromosome:1:123532242:123532320:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000051402|ENSRNOG00000010775 ## Same_strand|Intronic_coding|ENSRNOT00000014351|ENSRNOG00000010775 ## ENSRNOG00000010775|protein_coding|Arrdc4|Arrestin domain-containing protein 4 (Liver regeneration-related protein LRRG041/LRRGT00117). [Source:UniProtKB/Swiss-Prot;Acc:Q7TP90] |
novel_lenNOK_multiarm_Multihit_5varHIGH (2 loci)
sblock10600 [novel_lenNOK_multiarm_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.379 | no | no | 0.26/0.53 | 19/25/0.40 | 0.0 0.0 4.3 | 0.0 0.0 4.0 | 1 1 3 | 0 0 0 | 1 1 1 | 0 0 0 | 4 27 9 | 37 4 11 | 5arm 3arm 3arm | 5 11 11 | nd nd nd | 0.63 0.26 0.25 | 8 2 3 | 5 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------------------GUCCUGG-------------------------------------- | 1 | novel |
| seed | ----------------------------------------------------------------------------ACACUUG------------------------------- | 1 | novel |
| seed | -----UCGAGUC------------------------------------------------------------------------------------------------------ | 1 | novel |
| seed | ---------------------------------------------------------------------------------UGGAGUA-------------------------- | 1 | novel |
| seed | ------------------------------------------------------------------------------------AGUACUU----------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------------------------------------------------------------TGTCCTGGACACTTGGAGT--------------------------- | 19 | 1 | |
| ---------------------------------------------------------------------------GACACTTGGAGTACTTATAAATCT--------------- | 24 | 1 | |
| -----------------------------------------------------------------------------------GAGTACTTATAAATCTCAACCA--------- | 22 | 1 | |
| ----GTCGAGTCATTAATATATA------------------------------------------------------------------------------------------- | 19 | 1 | |
| --------------------------------------------------------------------------------TTGGAGTACTTATAAATCTCAACCA--------- | 25 | 1 | |
| rat | tgctGTCGAGTCATTAATATATAtttgtgaatgctaaaggcatgttattgaagggaagggcgatccacTGTCCTGGACACTTGGAGTACTTATAAATCTCAACCAtgacaagca | ||
| ****************************************************************************************************************** | |||
| rat | .(((.....(((((........((((((((.((((..(((..((((.....(((..((((....)).))..))).)))))))..)))).)))))))).......))))).))). | 0.520 -24.26 |
| rat | chromosome:7:17110998:17111111:-1 | intergenic |
sblock10754 [novel_lenNOK_multiarm_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.785 | no | no | 0.26/0.53 | 19/25/0.40 | 0.0 0.0 4.3 | 0.0 0.0 4.0 | 1 1 3 | 0 0 0 | 1 1 1 | 0 0 0 | 4 33 15 | 37 4 11 | 5arm 3arm 3arm | 5 11 11 | nd nd nd | 0.63 0.26 0.25 | 8 2 3 | 5 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------------------------------UGGAGUA-------------------------------- | 1 | novel |
| seed | ------------------------------------------------------------------------------------AGUACUU----------------------------- | 1 | novel |
| seed | ----------------------------------------------------------------------------ACACUUG------------------------------------- | 1 | novel |
| seed | -----UCGAGUC------------------------------------------------------------------------------------------------------------ | 1 | novel |
| seed | ---------------------------------------------------------------------GUCCUGG-------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------------------------------------------------------------TGTCCTGGACACTTGGAGT--------------------------------- | 19 | 1 | |
| ----GTCGAGTCATTAATATATA------------------------------------------------------------------------------------------------- | 19 | 1 | |
| ---------------------------------------------------------------------------GACACTTGGAGTACTTATAAATCT--------------------- | 24 | 1 | |
| --------------------------------------------------------------------------------TTGGAGTACTTATAAATCTCAACCA--------------- | 25 | 1 | |
| -----------------------------------------------------------------------------------GAGTACTTATAAATCTCAACCA--------------- | 22 | 1 | |
| rat | tgctGTCGAGTCATTAATATATAtttgtgaatgctaaaggcatgttattgaagggaagggcgatccacTGTCCTGGACACTTGGAGTACTTATAAATCTCAACCAtgacaaccatgagcg | ||
| ************************************************************************************************************************ | |||
| rat | .(((.....(((((........((((((((.((((..(((..((((.....(((..((((....)).))..))).)))))))..)))).)))))))).......))))).......))). | 0.540 -23.46 |
| rat | chromosome:7:19399000:19399119:-1 | intergenic |
novel_lenNOK_multiarm_Multihit_5varHIGH_bulgeHIGH (2 loci)
sblock10705 [novel_lenNOK_multiarm_Multihit_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.259 | no | no | 0.39/0.58 | 18/23/0.60 | 1.2 0.0 | 0.8 0.0 | 4 1 | 0 0 | 2 1 | 0 0 | 10 36 | 11 -8 | 5arm 3arm_loop | 14 14 | nd nd | 0.30 0.47 | 4 7 | 5 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------CCCGUAC------------------------------------------------------------------------------------ | 3 | novel | |
| seed | ------------------------------------------------GCCUUGU----------------------------------------------- | 1 | novel | |
| seed | ----------------ACUUGCC------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ----------TCCCGTACTTGCCTAGAAACTCA--------------------------------------------------------------------- | 23 | - | 2 | |
| ----------TCCCGTACTTGCCTAGAAAC------------------------------------------------------------------------ | 20 | - | 1 | |
| -----------------------------------------------TGCCTTGTCAGAGGACCCA------------------------------------ | 19 | - | 1 | |
| ---------------TACTTGCCTAGAAACTCA--------------------------------------------------------------------- | 18 | 1 | - | |
| rat | tgatgcaccaTCCCGTACTTGCCTAGAAACTCAtgggttctgtgtccTGCCTTGTCAGAGGACCCAtattcttgagacatatgtagtagggttttgtcctca | |||
| ****************************************************************************************************** | ||||
| rat | .((.(((....(((.(((.(((.((....((((((((((((.((...........)).))))))))......))))...)).)))))))))...)))..)). | 0.930 -24.80 | ||
| rat | chromosome:7:18801986:18802087:-1 | intergenic |
sblock10748 [novel_lenNOK_multiarm_Multihit_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.259 | no | no | 0.39/0.58 | 18/23/0.60 | 1.2 0.0 | 0.8 0.0 | 4 1 | 0 0 | 2 1 | 0 0 | 10 36 | 11 -8 | 5arm 3arm_loop | 14 14 | nd nd | 0.30 0.47 | 4 7 | 5 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------CCCGUAC------------------------------------------------------------------------------------ | 3 | novel | |
| seed | ------------------------------------------------GCCUUGU----------------------------------------------- | 1 | novel | |
| seed | ----------------ACUUGCC------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ----------TCCCGTACTTGCCTAGAAACTCA--------------------------------------------------------------------- | 23 | - | 2 | |
| ----------TCCCGTACTTGCCTAGAAAC------------------------------------------------------------------------ | 20 | - | 1 | |
| -----------------------------------------------TGCCTTGTCAGAGGACCCA------------------------------------ | 19 | - | 1 | |
| ---------------TACTTGCCTAGAAACTCA--------------------------------------------------------------------- | 18 | 1 | - | |
| rat | tgatgcaccaTCCCGTACTTGCCTAGAAACTCAtgggttctgtgtccTGCCTTGTCAGAGGACCCAtattcttgagacatatgtagtagggttttgtcctca | |||
| ****************************************************************************************************** | ||||
| rat | .((.(((....(((.(((.(((.((....((((((((((((.((...........)).))))))))......))))...)).)))))))))...)))..)). | 0.930 -24.80 | ||
| rat | chromosome:7:19396968:19397069:-1 | intergenic |
novel_lenNOK_multiarm_Multihit_5varHIGH_loopOverlap (2 loci)
sblock413 [novel_lenNOK_multiarm_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.130 | no | no | 0.32/0.53 | 19/22/0.29 | 0.0 0.0 0.0 2.0 | 0.0 0.0 0.0 0.5 | 1 1 3 2 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 18 32 41 11 | 19 2 -4 18 | 5arm 5arm 5arm_loop 3arm | 22 22 22 22 | nd nd nd nd | 0.37 0.45 0.58 0.23 | 6 10 6 3 | 7 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------AUCUGCA---------------------------------------------------------------- | 3 | novel |
| seed | --------------------------------------------------------------------------------GUAGCCA-------------------------- | 1 | novel |
| seed | ---------------------------------GCUGCUA------------------------------------------------------------------------- | 1 | novel |
| seed | -------------------GACAGUA--------------------------------------------------------------------------------------- | 1 | novel |
| seed | ------------------------------------------------------------------------------------CCAUACU---------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -----------------------------------------TATCTGCATAAGTATTTCC----------------------------------------------------- | 19 | 3 | |
| ------------------TGACAGTAGATCCAGGCTG---------------------------------------------------------------------------- | 19 | 1 | |
| --------------------------------GGCTGCTAATATCTGCATAAGT----------------------------------------------------------- | 22 | 1 | |
| -----------------------------------------------------------------------------------GCCATACTTTCAGATACAT----------- | 19 | 1 | |
| -------------------------------------------------------------------------------TGTAGCCATACTTTCAGATACA------------ | 22 | 1 | |
| rat | gtatttattctgtgccccTGACAGTAGATCCAGGCTGCTAATATCTGCATAAGTATTTCCcatgcattgtctttcactaTGTAGCCATACTTTCAGATACATttatgaagaca | ||
| ***************************************************************************************************************** | |||
| rat | ((.(((((...(((...((((.((((......((((((..........((((((((.....)))).))))..........)))))).)))).))))...)))..))))).)). | 0.520 -21.65 |
| rat | chromosome:1:51007194:51007306:-1 | intergenic |
sblock11206 [novel_lenNOK_multiarm_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.784 | no | no | 0.42/0.61 | 19/23/0.44 | 0.0 1.5 0.0 | 0.0 2.8 0.5 | 1 6 2 | 0 0 0 | 1 2 1 | 0 0 0 | 25 33 5 | 10 -4 28 | 5arm 5arm 3arm | 16 16 16 | nd nd nd | 0.26 0.32 0.37 | 2 2 4 | 9 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------------GCACACU----------------------------------------------------------------------- | 3 | novel | |
| seed | ----------------------------------------CACUCAG-------------------------------------------------------------------- | 2 | novel | |
| seed | -------------------------------------------------------------------------------------------CUAAUGA----------------- | 2 | novel | |
| seed | ----------------------------------GGAGCAC-------------------------------------------------------------------------- | 1 | novel | |
| seed | --------------------------CCCCUGC---------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| ------------------------------------AGCACACTCAGTATCTACA------------------------------------------------------------ | 19 | - | 3 | |
| ---------------------------------------ACACTCAGTATCTACATGGACCC----------------------------------------------------- | 23 | - | 2 | |
| ------------------------------------------------------------------------------------------GCTAATGACTGTAGCATGG------ | 19 | - | 1 | |
| ---------------------------------TGGAGCACACTCAGTATCT--------------------------------------------------------------- | 19 | 1 | - | |
| -------------------------TCCCCTGCTGGAGCACACTCAGT------------------------------------------------------------------- | 23 | - | 1 | |
| ------------------------------------------------------------------------------------------GCTAATGACTGTAGCATGGT----- | 20 | - | 1 | |
| rat | actcctccattattagttcaagaagTCCCCTGCTGGAGCACACTCAGTATCTACATGGACCCcctttgatgttagtaggccctagaagagGCTAATGACTGTAGCATGGTatagt | |||
| ******************************************************************************************************************* | ||||
| rat | (((...((((...(((.(((...((.((.((.((((.((..(((.((((((.....((....))...)))))))))..)).)))).)).))))..))))))....))))...))) | 0.900 -23.10 | ||
| rat | chromosome:7:18370233:18370347:1 | intergenic |
novel_lenNOK_multiarm_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (2 loci)
block959501 [novel_lenNOK_multiarm_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.442 | no | no | 0.47/0.61 | 19/23/0.50 | 1.7 1.7 | 2.7 0.3 | 3 3 | 0 0 | 2 3 | 0 0 | 30 8 | -18 -4 | 5arm_loop_3arm 3arm | 25 25 | nd nd | 0.50 0.42 | 8 4 | 6 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -------------------------------AGCAGAA---------------------------------- | 2 | novel | |||
| seed | -----------------------------------------CCACUGU------------------------ | 2 | novel | |||
| seed | ------------------------------------AACUUCC----------------------------- | 1 | novel | |||
| seed | ----------------------------------------------GUCCCAG------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T4S1 | T5S1 | |||
| ----------------------------------------TCCACTGTCCCAGCACCTGCACT--------- | 23 | - | 1 | - | 1 | |
| ---------------------------------------------TGTCCCAGCACCTGCACTA-------- | 19 | 1 | - | - | - | |
| -----------------------------------GAACTTCCACTGTCCCAGC------------------ | 19 | - | - | - | 1 | |
| ------------------------------TAGCAGAACTTCCACTGTC----------------------- | 19 | - | - | - | 1 | |
| ------------------------------TAGCAGAACTTCCACTGTCCCA-------------------- | 22 | - | - | 1 | - | |
| rat | tcttctttgcatgcactttgataacccctgTAGCAGAACTTCCACTGTCCCAGCACCTGCACTAtcccaaga | |||||
| ************************************************************************ | ||||||
| rat | ((((.......((((...((.......(((..((((........))))..)))))..)))).......)))) | 0.620 -8.05 | ||||
| rat | chromosome:1:47969372:47969443:1 | intergenic |
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