other hairpins
novel_lenNOK_multiarm_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (2 loci)
block2090868 [novel_lenNOK_multiarm_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.690 | no | no | 0.32/0.53 | 19/25/0.50 | 0.0 4.3 | 0.0 4.0 | 1 3 | 0 0 | 1 1 | 0 0 | 25 32 | 0 -18 | 5arm 5arm_loop_3arm | 11 11 | nd nd | 0.42 0.52 | 4 8 | 4 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------GUCCUGG---------------------------------------------------------------- | 1 | novel |
| seed | -----------------------------------------AGUACUU------------------------------------------------- | 1 | novel |
| seed | ---------------------------------ACACUUG--------------------------------------------------------- | 1 | novel |
| seed | --------------------------------------UGGAGUA---------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----------------------------------------GAGTACTTATAAATCTCAACCA----------------------------------- | 22 | 1 | |
| -------------------------TGTCCTGGACACTTGGAGT----------------------------------------------------- | 19 | 1 | |
| --------------------------------GACACTTGGAGTACTTATAAATCT----------------------------------------- | 24 | 1 | |
| -------------------------------------TTGGAGTACTTATAAATCTCAACCA----------------------------------- | 25 | 1 | |
| rat | gttattgaagggaagggcgatccacTGTCCTGGACACTTGGAGTACTTATAAATCTCAACCAtgacaaccatgagtggttatcctgctatcagaggc | ||
| ************************************************************************************************* | |||
| rat | ((..((((.((..(((..((.((((((((.(((....(((..((........))..)))))).)))).......))))))..))).)).))))..)) | 0.730 -20.91 |
| rat | chromosome:7:18804002:18804098:-1 | intergenic |
novel_lenNOK_multiarm_loopOverlap_mirtron_nonpairedHIGH (2 loci)
block1582647 [novel_lenNOK_multiarm_loopOverlap_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.011 | no | no | 0.52/0.63 | 18/21/0.20 | 0.0 0.0 | 1.0 0.0 | 3 2 | 0 0 | 3 1 | 0 0 | 30 18 | -17 -2 | 5arm_loop_3arm 3arm_loop | 1 1 | 2 7 | 0.43 0.32 | 7 3 | 5 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -------------------------------CCGUAAG-------------------------------------- | 3 | novel | |||
| seed | ----------------------------------------UCGGGGU----------------------------- | 2 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T3S1 | T3S2 | |||
| ---------------------------------------ATCGGGGTTTTGCCGGAGC------------------ | 19 | 2 | - | - | - | |
| ------------------------------GCCGTAAGTATCGGGGTT---------------------------- | 18 | - | 1 | 1 | - | |
| ------------------------------GCCGTAAGTATCGGGGTTTTG------------------------- | 21 | - | - | - | 1 | |
| rat | ggcggggaacaatatggcggatggcgaggaGCCGTAAGTATCGGGGTTTTGCCGGAGCgccgagttgggctgggtt | |||||
| **************************************************************************** | ||||||
| .....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000008893 ENSRNOG00000006221 Ube1c | |||||
| ........................>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000046782 ENSRNOG00000006221 Ube1c | |||||
| rat | .((..((..((((.(((((..((((((((..(((.......)))..))))))))...))))).))))..))..)). | 1.000 -29.40 | ||||
| rat | chromosome:4:131924544:131924619:-1 | Same_strand|Boundary_coding|ENSRNOT00000008893|ENSRNOG00000006221 ## ENSRNOG00000006221|protein_coding|Ube1c|NEDD8-activating enzyme E1 catalytic subunit (EC 6.3.2.-) (Ubiquitin- like modifier-activating enzyme 3) (Ubiquitin-activating enzyme 3) (NEDD8-activating enzyme E1C) (Ubiquitin-activating enzyme E1C). [Source:UniProtKB/Swiss-Prot;Acc:Q99MI7] |
sblock2426 [novel_lenNOK_multiarm_loopOverlap_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.368 | no | no | 0.63/0.83 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 40 44 | -4 -4 | 5arm_loop_3arm 3arm_loop | 1 1 | 0 15 | 0.42 0.39 | 4 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------GGUGGAG------------------------------------------------------ | 1 | novel | |
| seed | -----------------------------------------GUGCGGU--------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T3S2 | |||
| ----------------------------------------GGTGCGGTGGATTTCGGGT---------------------------------------------------------- | 19 | - | 1 | |
| -------------------------------------------------------GGGTGGAGGGCGCAGCCC-------------------------------------------- | 18 | 1 | - | |
| rat | agggagcatggcgaccgcgggagctgcggccacagacctaGGTGCGGTGGATTTCGGGTGGAGGGCGCAGCCCggaggtctggcgggcggaatgtgtgggtggggcgcgagaagccc | |||
| ********************************************************************************************************************* | ||||
| ......>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000015207 ENSRNOG00000011366 Pigs | |||
| ............>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000056222 ENSRNOG00000011366 Pigs | |||
| rat | .(((......(((.((((....((..((.((.(((((((.((.((.(((..((((....))))..))).))))..)))))))..)).))....))....))))..)))......))) | 0.490 -44.40 | ||
| rat | chromosome:10:64307166:64307282:-1 | Same_strand|Boundary_coding|ENSRNOT00000056222|ENSRNOG00000011366 ## Same_strand|Intronic_coding|ENSRNOT00000056222|ENSRNOG00000011366 ## ENSRNOG00000011366|protein_coding|Pigs|GPI transamidase component PIG-S (Phosphatidylinositol-glycan biosynthesis class S protein). [Source:UniProtKB/Swiss-Prot;Acc:Q5XI31] |
novel_lenNOK_multiarm_mirtron (2 loci)
sblock11732 [novel_lenNOK_multiarm_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.026 | no | no | 0.61/0.67 | 18/21/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 14 33 | 20 0 | 5arm 3arm | 1 1 | 3 47 | 0.43 0.06 | 5 1 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------UGGGGCU------------------------------------------- | 1 | novel |
| seed | ---------------AGCAGUG--------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| ----------------------------------------------------------GTGGGGCTGTGGGATATG--------------------------------- | 18 | 1 | |
| --------------GAGCAGTGGAAGGGGCGGGAA-------------------------------------------------------------------------- | 21 | 1 | |
| rat | atcctgcagctggtGAGCAGTGGAAGGGGCGGGAAggctgtgtctctggtcccacgggGTGGGGCTGTGGGATATGcttctctggctgctgtgggtccgcgtgagggtt | ||
| ************************************************************************************************************* | |||
| .>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000025293 ENSRNOG00000018711 NP_001102233.1 | ||
| rat | (((((.((((.((...(((((.....((.(((..((((.((((((((((((((((...))))))))).)))))))))))..))).)))))))....)))).))))))). | 0.440 -46.40 |
| rat | chromosome:8:61181575:61181683:-1 | Same_strand|Intronic_non-coding|ENSRNOT00000025293|ENSRNOG00000018711 ## ENSRNOG00000018711|protein_coding|NP_001102233.1|phosphopantothenoylcysteine decarboxylase [Source:RefSeq_peptide;Acc:NP_001102233] |
sblock7542 [novel_lenNOK_multiarm_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.496 | no | no | 0.36/0.39 | 18/22/0.33 | 0.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 1 30 | 31 8 | 5arm 3arm | 1 1 | 75 4 | 0.28 0.45 | 3 3 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --UUCUGUG--------------------------------------------------------------------------------------------------------------- | 2 | novel | |
| seed | ---------------------------------------------------------------------UAACUCU-------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T2S1 | |||
| -TTTCTGTGTCACTATCCT----------------------------------------------------------------------------------------------------- | 18 | - | 2 | |
| --------------------------------------------------------------------GTAACTCTGACTGTTTTTTCTC------------------------------ | 22 | 1 | - | |
| rat | cTTTCTGTGTCACTATCCTctctgttctctgaaatactgtgtttgagagctcgatgatatgctgcctaGTAACTCTGACTGTTTTTTCTCctagagcaaagattctggtggactgaaggc | |||
| ************************************************************************************************************************ | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000007018 ENSRNOG00000005191 Trim44 | |||
| rat | (((((.((.((((((...(((.((((((..((((.((...(((.((((((..........))).........))).))).))..))))....)))))).)))...)))))))).))))). | 0.570 -25.70 | ||
| rat | chromosome:3:87576736:87576855:-1 | Same_strand|Intronic_coding|ENSRNOT00000007018|ENSRNOG00000005191 ## ENSRNOG00000005191|protein_coding|Trim44|Tripartite motif-containing protein 44 (Protein DIPB). [Source:UniProtKB/Swiss-Prot;Acc:Q6QA27] |
novel_lenNOK_multiarm_randfoldOK_nonpairedHIGH (2 loci)
sblock2252 [novel_lenNOK_multiarm_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.53/0.61 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 3 35 | 31 3 | 5arm 3arm | 1 1 | nd nd | 0.32 0.39 | 2 5 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------------GGACACA--------------------------------------------- | 1 | novel | |
| seed | ----GUGGUUU--------------------------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T5S2 | |||
| ---------------------------------------------------------------TGGACACACTGGCGGGTT----------------------------------- | 18 | 1 | - | |
| ---CGTGGTTTGGGAAACTTGG---------------------------------------------------------------------------------------------- | 19 | - | 1 | |
| rat | gagCGTGGTTTGGGAAACTTGGgctcctccccgtccggcctcgagtctcaggaaacaaagtccTGGACACACTGGCGGGTTggggagggattctggaggttcggaagcctggctct | |||
| ******************************************************************************************************************** | ||||
| rat | ((((..(((((..(((.(((.((.(((((((((.((.(((....(((.(((((.......)))))))).....))).)).)))))))))...)).))).)))..)))))..)))). | 0.990 -55.90 | ||
| rat | chromosome:1:266014120:266014235:1 | intergenic |
sblock2719 [novel_lenNOK_multiarm_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.47/0.50 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 5 23 | 34 14 | 5arm 3arm | 1 1 | nd nd | 0.61 0.32 | 11 3 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------GGCUUCC--------------------------------------------------------------------------------------------------------- | 2 | novel |
| seed | -----------------------------------------------------------------------------AGCUCUU---------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| -----AGGCTTCCCTTGACAGAA----------------------------------------------------------------------------------------------- | 18 | 2 | |
| ----------------------------------------------------------------------------AAGCTCTTGCCTCAAGACT----------------------- | 19 | 1 | |
| rat | tccagAGGCTTCCCTTGACAGAAgctccagtcccaggtaagtactccttcaaatggctattagcctgcccagacggAAGCTCTTGCCTCAAGACTtagcttctgcctataactctgga | ||
| ********************************************************************************************************************** | |||
| rat | (((((((...........((((((((..((((..(((((((..((((.((....(((.....)))......)).)).))..)))))))...)))).)))))))).......))))))) | 0.830 -41.97 |
| rat | chromosome:10:64129047:64129164:1 | intergenic |
novel_lenNOK_multiarm_shortStem_5varHIGH_loopOverlap (2 loci)
block1167250 [novel_lenNOK_multiarm_shortStem_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.072 | no | no | 0.25/0.35 | 19/23/0.67 | 0.0 2.1 | 0.0 2.4 | 1 8 | 0 0 | 1 1 | 0 0 | 18 2 | -12 -4 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.26 0.25 | 4 3 | 9 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------AGAAAUA----------------- | 3 | novel | |
| seed | -----------------------------ACUAGAA-------------------- | 2 | novel | |
| seed | --------------------------UGUACUA----------------------- | 2 | novel | |
| seed | -------------------UUCAGUU------------------------------ | 1 | novel | |
| seed | ---------------------------GUACUAG---------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -------------------------------TAGAAATATTGCTTCATAC------ | 19 | - | 2 | |
| ----------------------------TACTAGAAATATTGCTTCATACC----- | 23 | - | 2 | |
| --------------------------TGTACTAGAAATATTGCTTCA--------- | 21 | - | 1 | |
| -------------------------TTGTACTAGAAATATTGCTTCA--------- | 22 | - | 1 | |
| -------------------------------TAGAAATATTGCTTCATACCGTC-- | 23 | - | 1 | |
| -------------------------TTGTACTAGAAATATTGCTT----------- | 20 | - | 1 | |
| ------------------TTTCAGTTTGTACTAGAAA------------------- | 19 | 1 | - | |
| rat | gggaacagagtaattgtaTTTCAGTTTGTACTAGAAATATTGCTTCATACCGTCcc | |||
| ******************************************************** | ||||
| rat | ((((...(((((...((((((((((....))).)))))))))))).......)))) | 1.000 -12.70 | ||
| rat | chromosome:2:105717986:105718041:-1 | intergenic |
sblock8231 [novel_lenNOK_multiarm_shortStem_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.129 | no | no | 0.24/0.63 | 19/25/0.50 | 0.0 3.0 | 2.0 0.5 | 2 2 | 0 0 | 2 1 | 0 0 | 0 0 | 13 -18 | 5arm 3arm_loop | 1 1 | nd nd | 0.88 0.25 | 22 3 | 4 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -AGGUUUU------------------------------------------------- | 2 | novel | |
| seed | ---------------------------------UGUUGCC----------------- | 1 | novel | |
| seed | ---------------------------------------CCCAGCA----------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S2 | T5S1 | |||
| --------------------------------------CCCCAGCATCAGCTTTGGC | 19 | - | 1 | |
| TAGGTTTTTATTGAGTTTTCT------------------------------------ | 21 | 1 | - | |
| --------------------------------TTGTTGCCCCAGCATCAGCTTTGG- | 24 | - | 1 | |
| TAGGTTTTTATTGAGTTTTCTTCCC-------------------------------- | 25 | - | 1 | |
| rat | TAGGTTTTTATTGAGTTTTCTTCCCagggttaTTGTTGCCCCAGCATCAGCTTTGGC | |||
| ********************************************************* | ||||
| rat | .......................((((((((..(((((...)))))..)))))))). | 0.630 -12.30 | ||
| rat | chromosome:3:141757509:141757565:1 | intergenic |
novel_lenNOK_shortStem_5varHIGH_loopOverlap_bulgeHIGH (2 loci)
block140358 [novel_lenNOK_shortStem_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.012 | no | no | 0.58/0.65 | 19/24/0.67 | 2.3 | 4.3 | 3 | 0 | 1 | 0 | 3 | -3 | 3arm | 1 | nd | 0.30 | 4 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------AUCUUGG------------------------ | 1 | novel |
| seed | ----------------------------------CUUGGAG---------------------- | 1 | novel |
| seed | -------------------------------------GGAGCCA------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -------------------------------TATCTTGGAGCCAGAGCCG------------- | 19 | 1 | |
| ------------------------------------TGGAGCCAGAGCCGCGTAAGAGAC--- | 24 | 1 | |
| ---------------------------------TCTTGGAGCCAGAGCCGCGT---------- | 20 | 1 | |
| rat | tgagtaagtacaggggcagatgctccaagagTATCTTGGAGCCAGAGCCGCGTAAGAGACctc | ||
| *************************************************************** | |||
| rat | .(((....(((...(((....((((((((.....))))))))....)))..)))......))) | 0.960 -19.80 |
| rat | chromosome:11:84949222:84949284:-1 | intergenic |
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