miR-Intess: classification

other hairpins

novel_multiarm_DicerNOK_5varHIGH_mirtron_randfoldOK (2 loci)

sblock8122 [novel_multiarm_DicerNOK_5varHIGH_mirtron_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.004	no	no	0.55/0.62	18/23/0.75	0.0 1.3	1.5 1.2	2 6	0 0	2 4	0 0	9 5	7 2	5arm 3arm	1 1	37 0	0.21 0.14	2 1	8	6	-1	1

		reads	miRBase family seed
seed	------------------------------------------------CGCUGGG------------------	4	novel
seed	----------GUGGGAA--------------------------------------------------------	2	novel
seed	----------------------------------------------UACGCUG--------------------	2	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T3S1	T4S2	T5S2
	-----------------------------------------------ACGCTGGGCTCTTTCCCTCA------	20	1	-	-	1	-	-
	-----------------------------------------------ACGCTGGGCTCTTTCCCT--------	18	-	-	-	-	1	-
	---------TGTGGGAAAGACTCCCAGCATC------------------------------------------	22	-	-	-	-	-	1
	---------TGTGGGAAAGACTCCCAGC---------------------------------------------	19	-	-	1	-	-	-
	---------------------------------------------TTACGCTGGGCTCTTTCCCTCAG-----	23	-	-	-	-	1	-
	-----------------------------------------------ACGCTGGGCTCTTTCCCTCAG-----	21	-	-	-	-	1	-
	---------------------------------------------TTACGCTGGGCTCTTTCCCTC-------	21	-	1	-	-	-	-
rat	tgggcgacaTGTGGGAAAGACTCCCAGCATCaggaagctgtgggcTTACGCTGGGCTCTTTCCCTCAGccaca
	*************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>	ENSRNOT00000009945 ENSRNOG00000007447 NP_001101234.1
rat	..(((....((.((((((((..((((((......((((.....))))..)))))).)))))))).)))))...	1.000 -31.90

rat

chromosome:3:106545754:106545826:1

novel_multiarm_DicerNOK_5varHIGH_randfoldOK (2 loci)

sblock7196 [novel_multiarm_DicerNOK_5varHIGH_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.002	no	no	0.45/0.58	19/24/0.75	0.0 2.0 0.0	0.0 1.5 0.0	1 2 1	0 0 0	1 1 1	0 0 0	0 16 15	29 6 4	5arm 5arm 3arm	2 2 2	nd nd nd	0.35 0.38 0.21	6 8 3	4	3	-1	2

		reads	miRBase family seed
seed	-----------------UCAUGUC-------------------------------------------------------------------	1	novel
seed	----------------------------------------------------------AAGCCAG--------------------------	1	novel
seed	-CAGCGAC-----------------------------------------------------------------------------------	1	novel
seed	---------------------GUCAAAA---------------------------------------------------------------	1	novel
		len	cloning frequencies
			T2S1	T3S1	T5S1
	----------------TTCATGTCAAAATGTGCCACCTGG---------------------------------------------------	24	-	-	1
	TCAGCGACAGTCACTTTTCA-----------------------------------------------------------------------	20	1	-	-
	--------------------TGTCAAAATGTGCCACCTGGAAG------------------------------------------------	23	-	-	1
	---------------------------------------------------------AAAGCCAGGTGGAGACGTG---------------	19	-	1	-
rat	TCAGCGACAGTCACTTTTCATGTCAAAATGTGCCACCTGGAAGcaagtccagggaccAAAGCCAGGTGGAGACGTGagaggtgtcattctg
	*******************************************************************************************
rat	.......(((.(((((((((((((........((((((((......(((....))).....)))))))).))))))))))))).....)))	0.990 -36.90

rat

chromosome:20:5555257:5555347:1

intergenic

sblock7639 [novel_multiarm_DicerNOK_5varHIGH_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.30/0.50	18/21/0.75	2.5 0.0 0.0	2.0 0.0 0.0	2 1 1	0 0 0	2 1 1	0 0 0	2 15 33	21 12 9	5arm 5arm 3arm	4 4 4	nd nd nd	0.10 0.14 0.28	1 2 3	4	2	-5	-8

		reads	miRBase family seed
seed	-----------------------------------------------------------------GCAAAGC-------------------------------------------	1	novel
seed	--------UCUAAUC----------------------------------------------------------------------------------------------------	1	novel
seed	---CCCUUUC---------------------------------------------------------------------------------------------------------	1	novel
seed	----------------ACUGAGA--------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T5S1
	----------------------------------------------------------------TGCAAAGCTATGGAAGCC---------------------------------	18	-	1
	---------------TACTGAGATGTTTTCATGGTC-------------------------------------------------------------------------------	21	-	1
	-------TTCTAATCTACTGAGATGTT----------------------------------------------------------------------------------------	20	-	1
	--GCCCTTTCTAATCTACTGAGA--------------------------------------------------------------------------------------------	21	1	-
rat	gaGCCCTTTCTAATCTACTGAGATGTTTTCATGGTCagtatgtcaccgggcaatatggtggctaTGCAAAGCTATGGAAGCCaaagtaatttctgtaaagataggatgggtcttt
	*******************************************************************************************************************
rat	((((((.((((.((((((.((((((((((((((((..(((((((((((.......))))))).))))...))))))))))).......))))).))..)))))))).))).))).	0.930 -37.91

rat

chromosome:3:140482337:140482451:-1

intergenic

novel_multiarm_DicerNOK_Multihit_loopOverlap_bulgeHIGH (2 loci)

sblock2984 [novel_multiarm_DicerNOK_Multihit_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.153	no	no	0.45/0.57	20/22/1.00	0.0 0.5 0.5	0.0 0.0 0.0	1 2 2	0 0 0	1 2 2	0 0 0	2 27 7	13 -13 1	5arm 5arm_loop_3arm 3arm	11 11 11	nd nd nd	0.35 0.20 0.32	4 4 6	5	3	-7	-1

		reads	miRBase family seed
seed	-----------------------------------------AGCUCUG---------------------	1	novel
seed	-----------------------------AGCUUUG---------------------------------	1	novel
seed	---GUCAAGU-----------------------------------------------------------	1	novel
seed	------------------------------------------GCUCUGC--------------------	1	novel
seed	----------------------------AAGCUUU----------------------------------	1	novel
		len	cloning frequencies
			T2S1	T2S2	T3S2
	-----------------------------------------AGCTCTGCCTGGGGACAATGT-------	21	1	-	-
	----------------------------AAGCTTTGAGTGAAGCTCTG---------------------	20	-	1	-
	--AGTCAAGTCTGTGGAAATGC-----------------------------------------------	20	-	-	1
	----------------------------------------AAGCTCTGCCTGGGGACAATGT-------	22	-	-	1
	---------------------------GAAGCTTTGAGTGAAGCTCTG---------------------	21	1	-	-
rat	gaAGTCAAGTCTGTGGAAATGCagcatGAAGCTTTGAGTGAAGCTCTGCCTGGGGACAATGTgggcttc
	*********************************************************************
rat	((((((..((((.(((....((((.....((((((....))))))))))))).))))......))))))	0.540 -19.50

rat

chromosome:11:75632794:75632862:-1

intergenic

sblock308 [novel_multiarm_DicerNOK_Multihit_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.174	no	no	0.42/0.50	19/24/0.75	0.0 0.0 0.0 0.0	0.0 0.0 0.0 0.0	1 1 1 1	0 0 0 0	1 1 1 1	0 0 0 0	2 21 33 28	22 -2 1 7	5arm 5arm_loop 3arm 3arm	22 22 24 24	nd nd nd nd	0.21 0.25 0.38 0.50	4 3 6 6	4	2	3	-7

		reads	miRBase family seed
seed	---CAGUUGC---------------------------------------------------------------------------------------------	1	novel
seed	--------------------------------------------------------GCAUCAU----------------------------------------	1	novel
seed	----------------------GGGAACU--------------------------------------------------------------------------	1	novel
seed	--------------------------------------------------AGGGUUG----------------------------------------------	1	miR-296
		len	cloning frequencies
			T1S2	T5S1
	-------------------------------------------------TAGGGTTGCATCATGACCACA---------------------------------	21	-	1
	--TCAGTTGCTCATAGGGATT----------------------------------------------------------------------------------	19	-	1
	---------------------TGGGAACTGCGTCTAGCCTTAGTT----------------------------------------------------------	24	1	-
	-------------------------------------------------------TGCATCATGACCACAGTGAC----------------------------	20	-	1
rat	gaTCAGTTGCTCATAGGGATTTGGGAACTGCGTCTAGCCTTAGTTgaacTAGGGTTGCATCATGACCACAGTGACtattggcctatatctagggttgactgtc
	*******************************************************************************************************
rat	((.((((((((((((((....(((..((((.((((((((((((.....)))))))))......)))..))))..)))....))))).....)))).)))))))	0.920 -29.20

rat

chromosome:1:50349746:50349848:-1

intergenic

novel_multiarm_DicerNOK_Multihit_loopOverlap_randfoldOK_bulgeHIGH (2 loci)

sblock1296 [novel_multiarm_DicerNOK_Multihit_loopOverlap_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.006	no	no	0.41/0.50	18/22/0.80	0.0 1.0 0.0	0.0 1.0 0.0	2 2 1	0 0 0	1 1 1	0 0 0	0 15 6	10 -1 12	5arm 3arm 3arm	2 11 11	nd nd nd	0.23 0.45 0.22	4 5 4	5	1	-11	-11

		reads	miRBase family seed
seed	-AGGUUGU----------------------------------------------------------------------	2	novel
seed	------------------------------------------GAGGCUG-----------------------------	1	miR-485
seed	--------------------------------------------GGCUGCU---------------------------	1	novel
seed	-------------------------------------------------------GACUGAA----------------	1	novel
		len	cloning frequencies
			T5S1
	TAGGTTGTCTTCTGTGGTTTCA--------------------------------------------------------	22	2
	------------------------------------------------------TGACTGAAGGCAGAAGAC------	18	1
	-----------------------------------------TGAGGCTGCTTGTTGACTGA-----------------	20	1
	-------------------------------------------AGGCTGCTTGTTGACTGAAG---------------	20	1
rat	TAGGTTGTCTTCTGTGGTTTCAttgctgctttcgttctcccTGAGGCTGCTTGTTGACTGAAGGCAGAAGACaccctg
	******************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000043702 ENSRNOG00000034080 RGD1563490_predicted
rat	((((.((((((((((((((.....((.(((((..........))))).)).....))))....)))))))))).))))	1.000 -26.70

rat

chromosome:1:47849321:47849398:1

sblock1347 [novel_multiarm_DicerNOK_Multihit_loopOverlap_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.006	no	no	0.41/0.50	18/22/0.80	0.0 1.0 0.0	0.0 1.0 0.0	2 2 1	0 0 0	1 1 1	0 0 0	0 15 6	10 -1 12	5arm 3arm 3arm	2 11 11	nd nd nd	0.23 0.45 0.22	4 5 4	5	1	-11	-11

		reads	miRBase family seed
seed	-AGGUUGU----------------------------------------------------------------------	2	novel
seed	------------------------------------------GAGGCUG-----------------------------	1	miR-485
seed	--------------------------------------------GGCUGCU---------------------------	1	novel
seed	-------------------------------------------------------GACUGAA----------------	1	novel
		len	cloning frequencies
			T5S1
	TAGGTTGTCTTCTGTGGTTTCA--------------------------------------------------------	22	2
	------------------------------------------------------TGACTGAAGGCAGAAGAC------	18	1
	-----------------------------------------TGAGGCTGCTTGTTGACTGA-----------------	20	1
	-------------------------------------------AGGCTGCTTGTTGACTGAAG---------------	20	1
rat	TAGGTTGTCTTCTGTGGTTTCAttgctgctttcgttctcccTGAGGCTGCTTGTTGACTGAAGGCAGAAGACaccctg
	******************************************************************************
rat	((((.((((((((((((((.....((.(((((..........))))).)).....))))....)))))))))).))))	1.000 -26.70

rat

chromosome:1:47971937:47972014:1

intergenic

novel_multiarm_DicerNOK_Multihit_randfoldOK (2 loci)

sblock8693 [novel_multiarm_DicerNOK_Multihit_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.002	no	no	0.50/0.65	20/20/1.00	0.0 0.0	0.0 0.0	1 1	0 0	1 1	0 0	31 16	4 9	5arm 3arm	26 29	nd nd	0.40 0.30	4 3	2	1	9	11

		reads	miRBase family seed
seed	-------------------------------------------------------------------------CUGGACG----------------------------	1	novel
seed	--------------------------------CACCCCC---------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T2S1
	------------------------------------------------------------------------CCTGGACGTACTGAATCTTG----------------	20	1
	-------------------------------ACACCCCCAGGGAGACACTG---------------------------------------------------------	20	1
rat	ggggctctatgttgccagaggtgccttctgtACACCCCCAGGGAGACACTGtcccgagaaaaagggacgttcCCTGGACGTACTGAATCTTGcctttggacacctcca
	************************************************************************************************************
rat	((((.....(((..(((((((((..(((.((((....((((((((....((((((........))))))))))))))..)))).)))...)))))))))))).)))).	0.960 -43.40

rat

chromosome:4:150778603:150778710:-1

intergenic

sblock8905 [novel_multiarm_DicerNOK_Multihit_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.003	no	no	0.52/0.57	21/21/1.00	0.0 0.0	0.0 0.0	1 1	0 0	1 1	0 0	27 23	3 3	5arm 3arm	3 110	nd nd	0.38 0.19	3 1	2	1	0	0

		reads	miRBase family seed
seed	----------------------------UUCAGUC-------------------------------------------------------------------	1	novel
seed	-----------------------------------------------------------UUCAGUC------------------------------------	1	novel
		len	cloning frequencies
			T3S1
	---------------------------CTTCAGTCAGGCTCACTGGTT------------------------------------------------------	21	1
	----------------------------------------------------------CTTCAGTCAGGCTCACTGGCT-----------------------	21	1
rat	agcctggctcactggctagcctctgctCTTCAGTCAGGCTCACTGGTTagcctctgctCTTCAGTCAGGCTCACTGGCTagcctctgctcttcattcaggct
	******************************************************************************************************
	----------------------------------------------------------------------------------------------------------------	ENSRNOT00000051405 ENSRNOG00000032252 LOC681850
	----------------------------------------------------------------------------------------------------------------	ENSRNOT00000047545 ENSRNOG00000032252 LOC681850
rat	((((((((.....((((((((..........(((.((.((.(((((..(((....)))..))))).)).)).)))))))))))...))........))))))	0.420 -37.20

rat

chromosome:4:57738579:57738680:1

Opposite_strand|Boundary_non-coding|ENSRNOT00000038063|ENSRNOG00000032252 ## Opposite_strand|Intronic_coding|ENSRNOT00000047545|ENSRNOG00000032252 ## ENSRNOG00000032252|protein_coding|LOC681850|LOC501224 protein. [Source:UniProtKB/TrEMBL;Acc:Q0P5Q7] ## {Repeats: trf 248 269 0 class=trf,trf 279 300 0 class=trf,trf 341 362 0 class=trf}

novel_multiarm_DicerNOK_Multihit_randfoldOK_bulgeHIGH (2 loci)

sblock10213 [novel_multiarm_DicerNOK_Multihit_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.010	no	no	0.52/0.71	21/23/1.00	0.0 0.0	0.0 0.0	3 1	0 0	1 1	0 0	23 18	8 16	5arm 3arm	24 24	nd nd	0.29 0.30	4 3	4	1	10	11

		reads	miRBase family seed
seed	------------------------GACCUGG---------------------------------------------------------------------------------	3	novel
seed	------------------------------------------------------------------------UCUCUGG---------------------------------	1	novel
		len	cloning frequencies
			T3S2
	-----------------------GGACCTGGTCTGGTGCAGCCC--------------------------------------------------------------------	21	3
	-----------------------------------------------------------------------GTCTCTGGGTTCTCACTAAGCAG------------------	23	1
rat	cccaggtacagctgaaggagtcaGGACCTGGTCTGGTGCAGCCCtcacagaccctgtctctcacctgcactGTCTCTGGGTTCTCACTAAGCAGctatggtgtaatctgggt
	****************************************************************************************************************
rat	((((((((((((((....(((.(((((((((..((((((((.......((((...)))).....))))))))...))))))))).)))...))))).....))).)))))).	1.000 -42.90