other hairpins
novel_multiarm_DicerNOK_Multihit_randfoldOK_bulgeHIGH (2 loci)
sblock10541 [novel_multiarm_DicerNOK_Multihit_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.52/0.71 | 21/23/1.00 | 0.0 0.0 | 0.0 0.0 | 3 1 | 0 0 | 1 1 | 0 0 | 23 18 | 8 16 | 5arm 3arm | 24 24 | nd nd | 0.29 0.30 | 4 3 | 4 | 1 | 10 | 11 |
| reads | miRBase family seed | ||
| seed | ------------------------GACCUGG--------------------------------------------------------------------------------- | 3 | novel |
| seed | ------------------------------------------------------------------------UCUCUGG--------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| -----------------------GGACCTGGTCTGGTGCAGCCC-------------------------------------------------------------------- | 21 | 3 | |
| -----------------------------------------------------------------------GTCTCTGGGTTCTCACTAAGCAG------------------ | 23 | 1 | |
| rat | cccaggtacagctgaaggagtcaGGACCTGGTCTGGTGCAGCCCtcacagaccctgtctctcacctgcactGTCTCTGGGTTCTCACTAAGCAGctatggtgtaatctgggt | ||
| **************************************************************************************************************** | |||
| rat | ((((((((((((((....(((.(((((((((..((((((((.......((((...)))).....))))))))...))))))))).)))...))))).....))).)))))). | 1.000 -42.90 |
| rat | chromosome:6:139522567:139522678:1 | intergenic |
novel_multiarm_DicerNOK_Multihit_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH (2 loci)
sblock9918 [novel_multiarm_DicerNOK_Multihit_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.157 | no | no | 0.62/0.70 | 20/21/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 4 0 | -2 16 | 5arm_loop 3arm | 32 32 | nd nd | 0.50 0.65 | 4 6 | 2 | 1 | 10 | 4 |
| reads | miRBase family seed | ||
| seed | -------------------------------------------CAGCACA------------- | 1 | novel |
| seed | -----CACGGCA--------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S2 | |||
| ----TCACGGCACACCTAGGCCCC--------------------------------------- | 20 | 1 | |
| ------------------------------------------TCAGCACACTAGGCCCTCAGC | 21 | 1 | |
| rat | ggccTCACGGCACACCTAGGCCCCacggcacacctaggccccTCAGCACACTAGGCCCTCAGC | ||
| *************************************************************** | |||
| rat | (((((....((...((((((((....)))....))))).......)).....)))))...... | 0.720 -16.50 |
| rat | chromosome:6:10702774:10702836:-1 | intergenic ## {Repeats: trf 3581 3601 0 class=trf,trf 3457 3477 0 class=trf,trf 3545 3565 0 class=trf,trf 3506 3527 0 class=trf} |
sblock9919 [novel_multiarm_DicerNOK_Multihit_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.122 | no | no | 0.62/0.70 | 20/21/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 4 0 | -2 16 | 5arm_loop 3arm | 32 32 | nd nd | 0.50 0.65 | 4 6 | 2 | 1 | 10 | 4 |
| reads | miRBase family seed | ||
| seed | -------------------------------------------CAGCACA------------- | 1 | novel |
| seed | -----CACGGCA--------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S2 | |||
| ----TCACGGCACACCTAGGCCCC--------------------------------------- | 20 | 1 | |
| ------------------------------------------TCAGCACACTAGGCCCTCAGC | 21 | 1 | |
| rat | ggccTCACGGCACACCTAGGCCCCacggaaaacctaggccccTCAGCACACTAGGCCCTCAGC | ||
| *************************************************************** | |||
| rat | (((((....((...((((((((....))....)))))).......)).....)))))...... | 0.760 -16.40 |
| rat | chromosome:6:10721932:10721994:-1 | intergenic ## {Repeats: trf 1421 1442 0 class=trf,trf 1460 1480 0 class=trf} |
novel_multiarm_DicerNOK_Multihit_shortStem_randfoldOK (2 loci)
sblock4060 [novel_multiarm_DicerNOK_Multihit_shortStem_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.52/0.57 | 21/21/1.00 | 0.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 2 2 | 34 34 | 5arm 3arm | 110 110 | nd nd | 0.29 0.29 | 2 2 | 3 | 1 | 0 | 0 |
| reads | miRBase family seed | ||
| seed | ---UUCAGUC------------------------------------------------------------------------------------------------------------ | 1 | novel |
| seed | ----------------------------------UUCAGUC----------------------------------------------------------------------------- | 1 | novel |
| seed | ------------------------------------------------------------------------------------------------UUCAGUC--------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| --CTTCAGTCAGGCTCACTGGCT----------------------------------------------------------------------------------------------- | 21 | 1 | |
| -----------------------------------------------------------------------------------------------CTTCAGTCAGGCTCACTGGTT-- | 21 | 1 | |
| ---------------------------------CTTCAGTCAGGCTCACTGGCT---------------------------------------------------------------- | 21 | 1 | |
| rat | ctCTTCAGTCAGGCTCACTGGCTagcctctgctCTTCAGTCAGGCTCACTGGCTagcctctgctcttcagttaggctctctgactagcctctgctCTTCAGTCAGGCTCACTGGTTag | ||
| ********************************************************************************************************************** | |||
| rat | ((..(((((.((.((.(((((..(((....(((..((((..((.((.(((((..(((....)))..))))).)).))..))))..)))....)))..))))).)).)).)))))..)) | 0.910 -40.20 |
| rat | chromosome:14:49021527:49021644:-1 | intergenic ## {Repeats: trf 465 486 0 class=trf,trf 372 393 0 class=trf,trf 434 455 0 class=trf} |
sblock4082 [novel_multiarm_DicerNOK_Multihit_shortStem_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.52/0.57 | 21/21/1.00 | 0.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 2 2 | 34 34 | 5arm 3arm | 110 110 | nd nd | 0.29 0.29 | 2 2 | 3 | 1 | 0 | 0 |
| reads | miRBase family seed | ||
| seed | ---UUCAGUC------------------------------------------------------------------------------------------------------------ | 1 | novel |
| seed | ----------------------------------UUCAGUC----------------------------------------------------------------------------- | 1 | novel |
| seed | ------------------------------------------------------------------------------------------------UUCAGUC--------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| --CTTCAGTCAGGCTCACTGGCT----------------------------------------------------------------------------------------------- | 21 | 1 | |
| -----------------------------------------------------------------------------------------------CTTCAGTCAGGCTCACTGGTT-- | 21 | 1 | |
| ---------------------------------CTTCAGTCAGGCTCACTGGCT---------------------------------------------------------------- | 21 | 1 | |
| rat | ctCTTCAGTCAGGCTCACTGGCTagcctctgctCTTCAGTCAGGCTCACTGGCTagcctctgctcttcagttaggctcactgactagcctctgctCTTCAGTCAGGCTCACTGGTTag | ||
| ********************************************************************************************************************** | |||
| -------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000048005 ENSRNOG00000033205 LOC501255 | ||
| rat | ((..(((((.((.((.(((((..(((....(((..(((((.((.((.(((((..(((....)))..))))).)).)).)))))..)))....)))..))))).)).)).)))))..)) | 0.940 -41.80 |
| rat | chromosome:14:49366432:49366549:-1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000048005|ENSRNOG00000033205 ## ENSRNOG00000033205|protein_coding|LOC501255| ## {Repeats: trf 465 486 0 class=trf,trf 372 393 0 class=trf,trf 434 455 0 class=trf} |
novel_multiarm_DicerNOK_loopOverlap_randfoldOK_nonpairedHIGH (2 loci)
sblock11799 [novel_multiarm_DicerNOK_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.41/0.55 | 20/22/1.00 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 6 32 0 | 11 -1 30 | 5arm 3arm 3arm | 1 1 1 | nd nd nd | 0.45 0.52 0.62 | 3 11 8 | 3 | 3 | -17 | -16 |
| reads | miRBase family seed | ||||
| seed | -----------------------------------------GAGAUCU--------------------------------------------- | 1 | novel | ||
| seed | -------UCUUGUC------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ------------------------------------------------------------------------CAUGUUU-------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T3S2 | T5S1 | |||
| ------TTCTTGTCTCTACCGGCTCC------------------------------------------------------------------- | 20 | 1 | - | - | |
| -----------------------------------------------------------------------TCATGTTTAGCTCTTCCTCTCT | 22 | - | 1 | - | |
| ----------------------------------------TGAGATCTCCATCACCTTGAG-------------------------------- | 21 | - | - | 1 | |
| rat | ggagttTTCTTGTCTCTACCGGCTCCactatgatctctttTGAGATCTCCATCACCTTGAGcccagggtctTCATGTTTAGCTCTTCCTCTCT | ||||
| ********************************************************************************************* | |||||
| rat | ((((((....((.((((...(((((......((((((....))))))...........))))).))))....)).....))))))........ | 0.830 -22.03 | |||
| rat | chromosome:8:72072085:72072177:-1 | intergenic |
sblock622 [novel_multiarm_DicerNOK_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.50/0.50 | 20/22/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 37 12 | -6 20 | 5arm_loop 3arm | 1 1 | nd nd | 0.59 0.35 | 7 3 | 2 | 1 | 0 | 0 |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------------------------------GCUUCAU------------------------ | 1 | novel |
| seed | --------------------------------------ACCAGUU------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -------------------------------------TACCAGTTTCTGCAGCCTCCTT----------------------------------------------------- | 22 | 1 | |
| --------------------------------------------------------------------------------TGCTTCATCACAGGCTTCCT------------ | 20 | 1 | |
| rat | ttgtccaagtcagaaatctgtggtgactcaaacttgaTACCAGTTTCTGCAGCCTCCTTagctgatgctgatgttgggggTGCTTCATCACAGGCTTCCTttcctgaagaca | ||
| **************************************************************************************************************** | |||
| rat | .((((..((...(((..(((((((((..((..((..(((.((((.....((((.......))))..)))).)))..))..))..)))))))))..))).....))...)))) | 0.970 -38.00 |
| rat | chromosome:1:102926677:102926788:-1 | intergenic |
novel_multiarm_DicerNOK_randfoldOK_bulgeHIGH (2 loci)
sblock5865 [novel_multiarm_DicerNOK_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.50/0.60 | 20/20/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 32 12 | 4 18 | 5arm 3arm | 1 1 | nd nd | 0.35 0.30 | 3 6 | 2 | 2 | 12 | 12 |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------------------------UGCCCAU------------------------ | 1 | novel | |
| seed | ---------------------------------UGAGCAU------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T4S1 | |||
| --------------------------------------------------------------------------------ATGCCCATGCCCCACAAAGC------------ | 20 | - | 1 | |
| --------------------------------TTGAGCATGGCAGCCAAAGA------------------------------------------------------------ | 20 | 1 | - | |
| rat | gcaggagggctggcggtggcatggatataagcTTGAGCATGGCAGCCAAAGAggcccaccaaggcctcgatggccttcccATGCCCATGCCCCACAAAGCagccaagaagca | |||
| **************************************************************************************************************** | ||||
| rat | ((.....(((((..((.(((((((............((((((..((((..((((((......))))))..))))....)))))))))))))))......))))).....)). | 0.860 -50.20 | ||
| rat | chromosome:19:26256286:26256397:1 | intergenic |
sblock7956 [novel_multiarm_DicerNOK_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.35/0.48 | 19/24/0.83 | 0.0 0.0 0.7 | 2.0 0.0 1.0 | 2 1 3 | 0 0 0 | 1 1 2 | 0 0 0 | 15 22 10 | 3 4 10 | 5arm 3arm 3arm | 1 1 1 | nd nd nd | 0.29 0.42 0.50 | 4 6 6 | 6 | 3 | 1 | -7 |
| reads | miRBase family seed | ||||
| seed | ----------------CAAAGUG-------------------------------------------------------------------- | 2 | novel | ||
| seed | ----------------------------------------------------------CCAAGUU-------------------------- | 2 | novel | ||
| seed | ---------------------------------------------------GCCCUUU--------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------------UCCAAGU--------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S2 | T3S1 | T5S1 | |||
| --------------------------------------------------------TTCCAAGTTTGTCTGCTCCTCA------------- | 22 | - | 1 | - | |
| ---------------------------------------------------------TCCAAGTTTGTCTGCTCCTCA------------- | 21 | - | - | 1 | |
| ---------------------------------------------------------TCCAAGTTTGTCTGCTCCTCAACT---------- | 24 | - | - | 1 | |
| ---------------TCAAAGTGACAACAGAAAAGGGAG---------------------------------------------------- | 24 | - | - | 1 | |
| --------------------------------------------------TGCCCTTTCCAAGTTTGTC---------------------- | 19 | 1 | - | - | |
| ---------------TCAAAGTGACAACAGAAAAG-------------------------------------------------------- | 20 | - | - | 1 | |
| rat | gagcctttcaacagtTCAAAGTGACAACAGAAAAGGGAGctgcacacagcTGCCCTTTCCAAGTTTGTCTGCTCCTCAACTatggggctca | ||||
| ******************************************************************************************* | |||||
| rat | (((((((.....((((...((((((((....(((((((((((....))))).))))))......))))).)))....))))..))))))). | 0.990 -31.40 | |||
| rat | chromosome:3:76937648:76937738:1 | intergenic |
novel_multiarm_DicerNOK_shortStem_nonpairedHIGH_bulgeHIGH (2 loci)
sblock7325 [novel_multiarm_DicerNOK_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.063 | no | no | 0.38/0.40 | 20/24/1.00 | 0.0 0.0 | 1.5 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 0 0 | 6 10 | 5arm 3arm | 1 1 | nd nd | 0.38 0.42 | 4 5 | 3 | 1 | 7 | 0 |
| reads | miRBase family seed | ||
| seed | -GAUGUUU--------------------------------------------------------- | 2 | novel |
| seed | ----------------------------------------------ACCUGUG------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ---------------------------------------------TACCTGTGAGAACTCTTTGA | 20 | 1 | |
| TGATGTTTCAGAGTGTGAAGT-------------------------------------------- | 21 | 1 | |
| TGATGTTTCAGAGTGTGAAGTAGT----------------------------------------- | 24 | 1 | |
| rat | TGATGTTTCAGAGTGTGAAGTAGTgttctctctcggagaaaacgtTACCTGTGAGAACTCTTTGA | ||
| ***************************************************************** | |||
| --------------------------------------------------------------------------- | ENSRNOT00000035355 ENSRNOG00000023712 Stox1_predicted | ||
| rat | .((..(((((.((.((((....((.(((((.....))))).)).)))))).)))))..))..... | 1.000 -17.00 |
| rat | chromosome:20:29935441:29935505:1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000035355|ENSRNOG00000023712 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000057578|ENSRNOG00000023712 ## ENSRNOG00000023712|protein_coding|Stox1_predicted| |
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