other hairpins
miRNAunknown_lenNOK_multiarm_DicerNOK_Multihit_randfoldOK_nonpairedHIGH (1 loci)
miRNAunknown_lenNOK_multiarm_DicerOK_Multihit_loopOverlap_mirtron_nonpairedHIGH_bulgeHIGH (1 loci)
sblock10005 (miRNA) [miRNAunknown_lenNOK_multiarm_DicerOK_Multihit_loopOverlap_mirtron_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.466 | no | no | 0.50/0.63 | 18/23/0.40 | 0.0 0.5 0.0 0.0 | 0.0 2.0 0.0 0.0 | 1 2 1 1 | 0 0 0 0 | 1 2 1 1 | 0 0 0 0 | 14 30 15 11 | 0 -22 3 7 | 5arm 5arm_loop_3arm 3arm 3arm | 18 18 18 18 | 0 16 28 32 | 0.33 0.57 0.42 0.42 | 4 7 4 4 | 5 | 3 | 2 | 2 |
| reads | miRBase family seed | ||||
| seed | --------------------------------CGCCUCA------------------------------------- | 1 | novel | ||
| seed | -------------------------------GCGCCUC-------------------------------------- | 1 | novel | ||
| seed | ---------------GCGAGUA------------------------------------------------------ | 1 | novel | ||
| seed | -----------------------------------------------CACGACU---------------------- | 1 | novel | ||
| seed | -------------------------------------------GAAGCAC-------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T2S2 | T3S2 | |||
| --------------GGCGAGTATCTCTTTGAG-------------------------------------------- | 18 | 1 | - | - | |
| ------------------------------AGCGCCTCACTCTGAAGCAC-------------------------- | 20 | 1 | - | - | |
| -------------------------------GCGCCTCACTCTGAAGCACGACT---------------------- | 23 | - | 1 | - | |
| ------------------------------------------TGAAGCACGACTAGGCCTC--------------- | 19 | - | 1 | - | |
| ----------------------------------------------GCACGACTAGGCCTCTGTG----------- | 19 | - | - | 1 | |
| rat | cccaggcatctctgGGCGAGTATCTCTTTGAGCGCCTCACTCTGAAGCACGACTAGGCCTCTGTGccttccaaggg | ||||
| **************************************************************************** | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000010824 ENSRNOG00000008008 Garnl1 | ||||
| >>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000010684 ENSRNOG00000008008 Garnl1 | ||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.......... | ENSRNOT00000054612 ENSRNOG00000036504 | ||||
| rat | (((((((((....((((.(((....(((((((.......))).))))....)))..))))..)))))).....))) | 0.550 -21.20 | |||
| rat | chromosome:6:76153136:76153211:-1 | Same_strand|Exonic_non-coding|ENSRNOT00000054612|ENSRNOG00000036504 ## Same_strand|Boundary_non-coding|ENSRNOT00000010684|ENSRNOG00000008008 ## Same_strand|Intronic_non-coding|ENSRNOT00000010684|ENSRNOG00000008008 ## Same_strand|Intronic_coding|ENSRNOT00000010824|ENSRNOG00000008008 ## ENSRNOG00000008008|protein_coding|Garnl1|GTPase-activating RapGAP domain-like 1 (GAP-related-interacting partner to E12) (GRIPE) (Tuberin-like protein 1). [Source:UniProtKB/Swiss-Prot;Acc:O55007] ## ENSRNOG00000036504|miRNA|| |
miRNAunknown_lenNOK_multiarm_Multihit_5varHIGH (1 loci)
sblock9653 (miRNA) [miRNAunknown_lenNOK_multiarm_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.293 | no | no | 0.44/0.53 | 18/21/0.56 | 0.0 1.2 | 0.7 1.0 | 3 6 | 0 0 | 3 1 | 0 0 | 23 0 | 5 31 | 5arm 3arm | 11 11 | nd nd | 0.25 0.35 | 2 6 | 9 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ------------------------UGGCUCU--------------------------------------------------------------------------------- | 3 | novel | |||
| seed | ------------------------------------------------------------------------------------------UCUUCCU--------------- | 2 | novel | |||
| seed | -----------------------------------------------------------------------------------------GUCUUCC---------------- | 2 | novel | |||
| seed | --------------------------------------------------------------------------------------------UUCCUGU------------- | 1 | novel | |||
| seed | -------------------------------------------------------------------------------------------CUUCCUG-------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S2 | T3S1 | T5S2 | |||
| ----------------------------------------------------------------------------------------TGTCTTCCTGTGGTTTGTTG---- | 20 | 2 | - | - | - | |
| -----------------------------------------------------------------------------------------GTCTTCCTGTGGTTTGTT----- | 18 | 2 | - | - | - | |
| -----------------------ATGGCTCTCACTGAAGACCA--------------------------------------------------------------------- | 20 | - | 1 | - | 1 | |
| -----------------------ATGGCTCTCACTGAAGACC---------------------------------------------------------------------- | 19 | - | - | 1 | - | |
| ------------------------------------------------------------------------------------------TCTTCCTGTGGTTTGTTG---- | 18 | 1 | - | - | - | |
| -------------------------------------------------------------------------------------------CTTCCTGTGGTTTGTTGGCTC | 21 | 1 | - | - | - | |
| rat | gttattaaataaggctactttgcATGGCTCTCACTGAAGACCAgcagtcgtactgtagctgttggtttcaagcagacgcctaaagaacTGTCTTCCTGTGGTTTGTTGGCTC | |||||
| **************************************************************************************************************** | ||||||
| ........................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>................... | ENSRNOT00000063385 ENSRNOG00000041632 | |||||
| rat | ((((.((((((((((..(((((...((((((..((..(((((((((((.........)))))))))))..)).))).))))))))....)))))......))))).)))).. | 0.480 -28.60 | ||||
| rat | chromosome:5:6354124:6354235:1 | Same_strand|Boundary_non-coding|ENSRNOT00000063385|ENSRNOG00000041632 ## Same_strand|Exonic_non-coding|ENSRNOT00000063385|ENSRNOG00000041632 ## ENSRNOG00000041632|miRNA|| |
miRNAunknown_lenNOK_multiarm_Multihit_loopOverlap_mirtron_nonpairedHIGH_bulgeHIGH (1 loci)
sblock2652 (miRNA) [miRNAunknown_lenNOK_multiarm_Multihit_loopOverlap_mirtron_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.323 | no | no | 0.50/0.68 | 18/23/0.33 | 0.0 0.5 0.0 0.0 0.0 | 0.0 2.0 0.0 0.0 0.0 | 1 2 1 1 1 | 0 0 0 0 0 | 1 2 1 1 1 | 0 0 0 0 0 | 11 27 39 43 4 | 19 -3 -10 -14 22 | 5arm 5arm_loop 5arm_loop_3arm 5arm_loop_3arm 3arm | 18 18 18 18 18 | 31 14 3 1 38 | 0.39 0.35 0.53 0.53 0.37 | 7 6 10 10 3 | 6 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------------------------------------------------CUCUGCU--------------- | 1 | novel | |||
| seed | ------------GCGAGUA------------------------------------------------------------------------------------ | 1 | novel | |||
| seed | ----------------------------GCGCCUC-------------------------------------------------------------------- | 1 | novel | |||
| seed | ----------------------------------------GAAGCAC-------------------------------------------------------- | 1 | novel | |||
| seed | --------------------------------------------CACGACU---------------------------------------------------- | 1 | novel | |||
| seed | -----------------------------CGCCUCA------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S1 | T2S2 | T3S1 | T3S2 | |||
| ---------------------------AGCGCCTCACTCTGAAGCAC-------------------------------------------------------- | 20 | 1 | - | - | - | |
| --------------------------------------------------------------------------------CCTCTGCTCTGCACCGACC---- | 19 | - | - | 1 | - | |
| -----------GGCGAGTATCTCTTTGAG-------------------------------------------------------------------------- | 18 | 1 | - | - | - | |
| ----------------------------GCGCCTCACTCTGAAGCACGACT---------------------------------------------------- | 23 | - | 1 | - | - | |
| -------------------------------------------GCACGACTAGGCCTCTGTG----------------------------------------- | 19 | - | - | - | 1 | |
| ---------------------------------------TGAAGCACGACTAGGCCTC--------------------------------------------- | 19 | - | 1 | - | - | |
| rat | aggcatctctgGGCGAGTATCTCTTTGAGCGCCTCACTCTGAAGCACGACTAGGCCTCTGTGccttccaaggggctccctCCTCTGCTCTGCACCGACCgcct | |||||
| ******************************************************************************************************* | ||||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000038803 ENSRNOG00000032593 | |||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>........................................ | ENSRNOT00000054440 ENSRNOG00000036318 | |||||
| rat | ((((...((.(((((((((.......((((.(((......((((((((..........))))).)))..))).)))).......))))).)).))))..)))) | 0.860 -30.24 | ||||
| rat | chromosome:10:45778256:45778358:1 | Same_strand|Exonic_coding|ENSRNOT00000038803|ENSRNOG00000032593 ## Same_strand|Boundary_coding|ENSRNOT00000038803|ENSRNOG00000032593 ## Same_strand|Exonic_non-coding|ENSRNOT00000054440|ENSRNOG00000036318 ## Same_strand|Intronic_coding|ENSRNOT00000038803|ENSRNOG00000032593 ## ENSRNOG00000036318|miRNA|| ## ENSRNOG00000032593|protein_coding|| |
miRNAunknown_lenNOK_multiarm_Multihit_loopOverlap_nonpairedHIGH (1 loci)
sblock5647 (miRNA) [miRNAunknown_lenNOK_multiarm_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.102 | no | no | 0.67/0.74 | 18/21/0.29 | 0.0 0.0 0.0 | 1.0 0.0 0.0 | 4 2 1 | 0 0 0 | 1 1 1 | 0 0 0 | 22 33 20 | -6 -14 0 | 5arm_loop_3arm 5arm_loop_3arm 3arm | 10 13 71 | nd nd nd | 0.48 0.44 0.37 | 4 4 2 | 7 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------GGUCGGU-------------------------- | 2 | novel | |
| seed | -----------------------GGUCGGU-------------------------------------------------- | 2 | novel | |
| seed | ------------------------------------------CGGUCGG------------------------------- | 1 | novel | |
| seed | ----------------------------------------------------------CGGUCAG--------------- | 1 | novel | |
| seed | ----------------------------------CGGUCAG--------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| ----------------------CGGTCGGTCGGTCGGTCAG--------------------------------------- | 19 | - | 1 | |
| -----------------------------------------TCGGTCGGTCGGTCGGTCG-------------------- | 19 | 1 | - | |
| ----------------------------------------------CGGTCGGTCGGTCGGTCAGTC------------- | 21 | - | 1 | |
| ---------------------------------------------------------TCGGTCAGTCGGTCGGTC----- | 18 | 1 | - | |
| ----------------------CGGTCGGTCGGTCGGTCAGTC------------------------------------- | 21 | - | 1 | |
| ----------------------------------------------CGGTCGGTCGGTCGGTCAG--------------- | 19 | - | 1 | |
| ---------------------------------TCGGTCAGTCGGTCGGTC----------------------------- | 18 | 1 | - | |
| rat | gcgcacgcatctgtctgtctgtCGGTCGGTCGGTCGGTCAGTCGGTCGGTCGGTCGGTCGGTCAGTCGGTCGGTCggtcg | |||
| ******************************************************************************** | ||||
| ....................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000062169 ENSRNOG00000040416 | |||
| rat | .((..((...(((.(((.((((((..((..((..(((....)))..))..))..))).))).))).))).))..)).... | 0.890 -35.00 | ||
| rat | chromosome:18:28141931:28142010:1 | Same_strand|Exonic_non-coding|ENSRNOT00000062169|ENSRNOG00000040416 ## Same_strand|Boundary_non-coding|ENSRNOT00000062169|ENSRNOG00000040416 ## ENSRNOG00000040416|miRNA|| ## {Repeats: dust 28142017 28142035 0 class=dust,(CGGT)n 47 65 1 class=Simple_repeat,dust 28142061 28142079 0 class=dust,(CGGT)n 56 77 1 class=Simple_repeat,(CGGT)n 23 41 1 class=Simple_repeat,dust 28142045 28142071 0 class=dust,trf 80 101 0 class=trf,trf 56 82 0 class=trf,dust 28142004 28142027 0 class=dust,(CGGT)n 3 112 1 class=Simple_repeat,trf 48 66 0 class=trf,dust 28142025 28142046 0 class=dust,(CGGT)n 67 85 1 class=Simple_repeat,(CGGT)n 31 57 1 class=Simple_repeat,trf 72 90 0 class=trf,trf 15 38 0 class=trf,(CGGT)n 75 98 1 class=Simple_repeat,(CGGT)n 12 33 1 class=Simple_repeat,dust 28142037 28142055 0 class=dust,trf 28 46 0 class=trf,dust 28142069 28142090 0 class=dust,trf 36 57 0 class=trf} |
miRNAunknown_lenNOK_multiarm_Multihit_loopOverlap_randfoldOK (1 loci)
sblock11968 (miRNA) [miRNAunknown_lenNOK_multiarm_Multihit_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.001 | no | no | 0.26/0.35 | 19/20/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 22 6 | -4 10 | 5arm_loop_3arm 3arm | 261 261 | nd nd | 0.32 0.00 | 4 0 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------CAUACAU------------------ | 1 | novel |
| seed | -----------------------GUGUGUG----------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ---------------------------------------------------GCATACATACATACATACAC------ | 20 | 1 | |
| ----------------------TGTGTGTGTATACATATAT------------------------------------ | 19 | 1 | |
| rat | tgtgtgtgtgtgtgtgtgtgtgTGTGTGTGTATACATATATgtgcgtgcatGCATACATACATACATACACacacat | ||
| ***************************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000012846 ENSRNOG00000009772 Kirrel3_predicted | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000013036 ENSRNOG00000009772 Kirrel3_predicted | ||
| <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.... | ENSRNOT00000062974 ENSRNOG00000041221 | ||
| rat | .(((((((((((((((((((((((((((((((..(((....)))..))))))))))))))))))))))))))))))) | 1.000 -51.00 |
| rat | chromosome:8:34735036:34735112:1 | Same_strand|Intronic_coding|ENSRNOT00000013036|ENSRNOG00000009772 ## Opposite_strand|Exonic_non-coding|ENSRNOT00000062974|ENSRNOG00000041221 ## ENSRNOG00000041221|miRNA|| ## ENSRNOG00000009772|protein_coding|Kirrel3_predicted|kin of IRRE like 3 [Source:RefSeq_peptide;Acc:NP_001041680] ## {Repeats: (TG)n 45 64 1 class=Simple_repeat,dust 34734960 34734969 0 class=dust,trf 1 10 0 class=trf,(CATA)n 3 23 1 class=Simple_repeat,(TG)n 1 72 1 class=Simple_repeat,(CATA)n 1 26 1 class=Simple_repeat} |
miRNAunknown_lenNOK_multiarm_Multihit_randfoldOK (1 loci)
sblock11286 (miRNA) [miRNAunknown_lenNOK_multiarm_Multihit_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.001 | no | no | 0.21/0.26 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 21 | 34 13 | 5arm 3arm | 278 278 | nd nd | 0.00 0.11 | 0 1 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -GUGUGUA------------------------------------------------------------------------------------------------------ | 1 | novel | |
| seed | -----------------------------------------------------------------------AUAUAUA-------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T5S2 | |||
| ----------------------------------------------------------------------TATATATACACACACACAT--------------------- | 19 | - | 1 | |
| TGTGTGTATATATATGTAT------------------------------------------------------------------------------------------- | 19 | 1 | - | |
| rat | TGTGTGTATATATATGTATgtatgtatgtatgtatatatatatatatatatatatatatatatatatataTATATATACACACACACATatatatatatatatatatatt | |||
| ************************************************************************************************************** | ||||
| ------------------------------------------------------------------------------------------------------------------------ | ENSRNOT00000039475 ENSRNOG00000026634 Glipr1l1 | |||
| ------------------------------------------------------------------------------------------------------------------------ | ENSRNOT00000048015 ENSRNOG00000026634 Glipr1l1 | |||
| ....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000063393 ENSRNOG00000041640 | |||
| rat | .((((((((((((((((((((((((.(((.(((((((((((((((((((((((....))))))))))))))))))))))).))).)))))))))))))))))))))))). | 0.920 -53.60 | ||
| rat | chromosome:7:51153914:51154023:1 | Opposite_strand|Intronic_coding|ENSRNOT00000039475|ENSRNOG00000026634 ## Same_strand|Exonic_non-coding|ENSRNOT00000063393|ENSRNOG00000041640 ## ENSRNOG00000041640|miRNA|| ## ENSRNOG00000026634|protein_coding|Glipr1l1|GLI pathogenesis-related 1 like 1 Gene [Source:MGI Symbol;Acc:MGI:1916536] ## {Repeats: dust 51153937 51153956 0 class=dust,(TA)n 129 148 1 class=Simple_repeat,(TA)n 1 180 1 class=Simple_repeat,trf 105 124 0 class=trf,trf 35 54 0 class=trf,dust 51153867 51153886 0 class=dust,(TA)n 59 78 1 class=Simple_repeat} |
miRNAunknown_lenNOK_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH (1 loci)
block987819 (miRNA) [miRNAunknown_lenNOK_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.393 | no | no | 0.58/0.63 | 19/23/0.50 | 0.5 0.0 0.0 | 2.0 0.0 0.0 | 2 1 1 | 0 0 0 | 2 1 1 | 0 0 0 | 30 15 11 | -22 3 7 | 5arm_loop_3arm 3arm 3arm | 9 9 9 | nd nd nd | 0.57 0.42 0.42 | 7 4 4 | 4 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | --------------------------------CGCCUCA------------------------------------- | 1 | novel | ||
| seed | -------------------------------GCGCCUC-------------------------------------- | 1 | novel | ||
| seed | -----------------------------------------------CACGACU---------------------- | 1 | novel | ||
| seed | -------------------------------------------GAAGCAC-------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T2S2 | T3S2 | |||
| ------------------------------AGCGCCTCACTCTGAAGCAC-------------------------- | 20 | 1 | - | - | |
| -------------------------------GCGCCTCACTCTGAAGCACGACT---------------------- | 23 | - | 1 | - | |
| ------------------------------------------TGAAGCACGACTAGGCCTC--------------- | 19 | - | 1 | - | |
| ----------------------------------------------GCACGACTAGGCCTCTGTG----------- | 19 | - | - | 1 | |
| rat | cccaggcatctctgggcaagtatctctttgAGCGCCTCACTCTGAAGCACGACTAGGCCTCTGTGccttccaaggg | ||||
| **************************************************************************** | |||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.......... | ENSRNOT00000054421 ENSRNOG00000036300 | ||||
| rat | (((((((((....((((.(((....(((((((.......))).))))....)))..))))..)))))).....))) | 0.690 -20.40 | |||
| rat | chromosome:1:101125881:101125956:1 | Same_strand|Exonic_non-coding|ENSRNOT00000054421|ENSRNOG00000036300 ## ENSRNOG00000036300|miRNA|| |
miRNAunknown_lenNOK_shortStem (1 loci)
block1021844 (miRNA) [miRNAunknown_lenNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.216 | no | no | 0.83/0.83 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | 32 | 5arm | 1 | nd | 0.28 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----CGGGGCU---------------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| ----GCGGGGCTAGGGCCGGGA------------------------------------------------------------------------------------------ | 18 | 1 | |
| rat | gctgGCGGGGCTAGGGCCGGGAcagagcccgtggtggggcggcctgcggtccggcgatctcaggctgcgcgccaggccccggcgccgctctttcggcctgccgtccctccgg | ||
| **************************************************************************************************************** | |||
| <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< | ENSRNOT00000025618 ENSRNOG00000018916 NP_001099768.1 | ||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>................................................................................... | ENSRNOT00000062140 ENSRNOG00000040387 | ||
| rat | .((((.(((((..((((((((..(((((..(((.(((((((((.(((((((.((.....)).))))))).)))..)))))).))).)))))))))))))...))))).)))) | 0.990 -66.30 |
| rat | chromosome:1:186997225:186997336:1 | Same_strand|Exonic_non-coding|ENSRNOT00000062140|ENSRNOG00000040387 ## Opposite_strand|Exonic_non-coding|ENSRNOT00000025618|ENSRNOG00000018916 ## ENSRNOG00000040387|miRNA|| ## ENSRNOG00000018916|protein_coding|NP_001099768.1|B-cell CLL/lymphoma 7C [Source:RefSeq_peptide;Acc:NP_001099768] |
miRNAunknown_lenNOK_shortStem_randfoldOK_nonpairedHIGH (1 loci)
block387131 (miRNA) [miRNAunknown_lenNOK_shortStem_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.009 | no | no | 0.56/0.56 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | 11 | 3arm | 8 | nd | 0.33 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------UGUGUGU-------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| --------------------------------------------------------GTGTGTGTGTGCTCACTC---- | 18 | 1 | |
| rat | catgatcccttctagcatgtacctgcacatatatgcaggtgtgtgtgtgtgtgtgtGTGTGTGTGTGCTCACTCatgc | ||
| ****************************************************************************** | |||
| ......................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000062930 ENSRNOG00000041177 | ||
| rat | (((((........((((..(((.((((((((((((((........)))))))))))))).)))..))))...))))). | 0.780 -27.10 |
| rat | chromosome:14:18091575:18091652:1 | Same_strand|Exonic_non-coding|ENSRNOT00000062930|ENSRNOG00000041177 ## ENSRNOG00000041177|miRNA|| ## {Repeats: (TG)n 18 29 1 class=Simple_repeat,(TG)n 1 29 1 class=Simple_repeat,dust 18091613 18091624 0 class=dust,trf 1 12 0 class=trf} |
miRNAunknown_multiarm_5varHIGH_loopOverlap (1 loci)
block1131275 (miRNA) [miRNAunknown_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.026 | no | no | 0.48/0.57 | 20/21/1.00 | 0.0 1.5 | 0.0 1.0 | 1 2 | 0 0 | 1 2 | 0 0 | 24 12 | -16 -2 | 5arm_loop_3arm 3arm | 2 7 | nd nd | 0.33 0.25 | 6 3 | 3 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ----------------------------------CUCCUUC--------------------------- | 1 | novel | ||
| seed | -------------------------------------CUUCAAG------------------------ | 1 | novel | ||
| seed | -------------------------GGGAAAA------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S1 | T5S2 | |||
| ---------------------------------GCTCCTTCAAGTATGCCTGGG-------------- | 21 | 1 | - | - | |
| ------------------------------------CCTTCAAGTATGCCTGGGTC------------ | 20 | - | 1 | - | |
| ------------------------TGGGAAAAGGCTCCTTCAAGT----------------------- | 21 | - | - | 1 | |
| rat | agtttgaaaaggaggctgctgagaTGGGAAAAGGCTCCTTCAAGTATGCCTGGGTCttgggcaaactg | ||||
| ******************************************************************** | |||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>............................................ | ENSRNOT00000063218 ENSRNOG00000041465 | ||||
| rat | ((((((..((((((((((((..((.((((......)))))).)))).))))...))))...)))))). | 0.860 -20.90 | |||
| rat | chromosome:2:19568117:19568184:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000063218|ENSRNOG00000041465 ## ENSRNOG00000041465|miRNA|| |
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