other hairpins
novel_5varHIGH_randfoldOK_nonpairedHIGH (1 loci)
novel_Multihit_5varHIGH_loopOverlap_bulgeHIGH (1 loci)
block843563 [novel_Multihit_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.077 | no | no | 0.50/0.52 | 18/23/0.83 | 1.2 | 1.0 | 6 | 0 | 3 | 0 | 5 | -6 | 5arm_loop_3arm | 25 | nd | 0.25 | 4 | 6 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------CACAGGA--------------------------------------- | 5 | novel | ||
| seed | ------CCACUCU---------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S2 | T5S1 | T5S2 | |||
| ------------TCACAGGACCTACACTGTTG--------------------------- | 20 | 1 | 3 | - | |
| -----TCCACTCTCACAGGACCTACACT------------------------------- | 23 | - | - | 1 | |
| ------------TCACAGGACCTACACTGT----------------------------- | 18 | - | 1 | - | |
| rat | gcaccTCCACTCTCACAGGACCTACACTGTTGtaggaactccaatgtctgagcacctgc | ||||
| *********************************************************** | |||||
| rat | (((......(((..((((((((((((....))))))...)))..)))..)))....))) | 0.890 -13.20 | |||
| rat | chromosome:1:49861828:49861886:-1 | intergenic |
novel_Multihit_shortStem_mirtron_nonpairedHIGH_bulgeHIGH (1 loci)
block960170 [novel_Multihit_shortStem_mirtron_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.343 | no | no | 0.33/0.33 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 1 | 39 | 5arm | 13 | 1 | 0.38 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --GGUAUGA--------------------------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| -AGGTATGACTAATTGGTTACT-------------------------------------------------------------------------------------------------- | 21 | 1 | |
| rat | aAGGTATGACTAATTGGTTACTttaaagcttagtcttaatgtattgttattttgaatttaattttgaaatttggattcaaaaagtagttctgtaaaagctttttgtggttactcatcttt | ||
| ************************************************************************************************************************ | |||
| >>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000044959 ENSRNOG00000023753 Af6 | ||
| >>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000042807 ENSRNOG00000023753 Af6 | ||
| rat | ((((.((((.((((....(((...(((((((....(((....((((((.((((((((((((.........))))))))))))))))))....))))))))))..))))))).)))))))) | 0.510 -19.20 |
| rat | chromosome:1:48889351:48889470:1 | Same_strand|Boundary_non-coding|ENSRNOT00000060057|ENSRNOG00000023753 ## Same_strand|Boundary_coding|ENSRNOT00000044959|ENSRNOG00000023753 ## ENSRNOG00000023753|protein_coding|Af6|Afadin (Protein Af-6). [Source:UniProtKB/Swiss-Prot;Acc:O35889] |
novel_cloningHIGH_5varHIGH_loopOverlap_bulgeHIGH (1 loci)
block1094186 [novel_cloningHIGH_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.326 | no | no | 0.37/0.62 | 18/26/0.78 | 5.8 | 5.2 | 24 | 0 | 8 | 0 | 8 | -18 | 3arm | 1 | nd | 0.30 | 6 | 68 | 8 | 2 | -2 |
| reads | miRBase family seed | |||||||||
| seed | --------------------------------AGAUGAC------------------------------------- | 20 | novel | |||||||
| seed | ---------AGGACUU------------------------------------------------------------ | 17 | novel | |||||||
| seed | -------------------------------------------AACCUGU-------------------------- | 6 | novel | |||||||
| seed | ---------------------------------GAUGACC------------------------------------ | 4 | novel | |||||||
| seed | ----------------AGUGCAC----------------------------------------------------- | 4 | novel | |||||||
| seed | ---------------------------------------------------AUUCCAG------------------ | 3 | novel | |||||||
| seed | ---------------------------GACAUAG------------------------------------------ | 3 | novel | |||||||
| seed | -----------GACUUAG---------------------------------------------------------- | 2 | novel | |||||||
| seed | ------------------------------------------------GUCAUUC--------------------- | 2 | novel | |||||||
| seed | ------------------------------------GACCUUU--------------------------------- | 2 | novel | |||||||
| seed | ------------------------GGGGACA--------------------------------------------- | 1 | novel | |||||||
| seed | ---------------------ACAGGGG------------------------------------------------ | 1 | novel | |||||||
| seed | -------GUAGGAC-------------------------------------------------------------- | 1 | novel | |||||||
| seed | --------------------------------------------------CAUUCCA------------------- | 1 | novel | |||||||
| seed | -------------CUUAGUG-------------------------------------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S2 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------------------------------TAGATGACCTTTAACCTGTCA------------------------ | 21 | - | - | 1 | - | - | - | 18 | 1 | |
| --------TAGGACTTAGTGCACAGGGGACA--------------------------------------------- | 23 | 1 | - | - | 1 | - | - | 6 | - | |
| --------------------------------AGATGACCTTTAACCTGTCA------------------------ | 20 | - | - | - | - | - | - | 4 | - | |
| --------TAGGACTTAGTGCACAGGG------------------------------------------------- | 19 | - | - | - | - | - | - | 4 | - | |
| --------------------------------------------------CATTCCAGCCTGGGTTGCCTG----- | 21 | - | 1 | - | - | - | - | 2 | - | |
| --------TAGGACTTAGTGCACAGGGGA----------------------------------------------- | 21 | - | - | - | - | - | - | 3 | - | |
| ---------------TAGTGCACAGGGGACATAGATGACC------------------------------------ | 25 | - | - | - | - | 1 | - | 1 | - | |
| -----------------------------------------------TGTCATTCCAGCCTGGGTTGCC------- | 22 | - | - | - | - | - | - | 2 | - | |
| --------------------------GGACATAGATGACCTTTAACCTGTCA------------------------ | 26 | - | - | - | - | - | - | 2 | - | |
| ------------------------------------------TAACCTGTCATTCCAGCCTGGGTTG--------- | 25 | - | - | - | - | - | - | 2 | - | |
| ------------------------------------------TAACCTGTCATTCCAGCCTGGGTT---------- | 24 | - | - | - | - | - | - | 2 | - | |
| --------TAGGACTTAGTGCACAGGGGAC---------------------------------------------- | 22 | - | - | - | - | - | - | 2 | - | |
| ------------ACTTAGTGCACAGGGGACA--------------------------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------TAACCTGTCATTCCAGCCTGG------------- | 21 | 1 | - | - | - | - | - | - | - | |
| -----------------------------------TGACCTTTAACCTGTCATTCCAG------------------ | 23 | - | - | - | - | - | 1 | - | - | |
| ---------------TAGTGCACAGGGGACATA------------------------------------------- | 18 | - | 1 | - | - | - | - | - | - | |
| ----------GGACTTAGTGCACAGGGGAC---------------------------------------------- | 20 | - | - | - | - | - | - | 1 | - | |
| --------------------CACAGGGGACATAGATGACCTTT--------------------------------- | 23 | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------TAACCTGTCATTCCAGCCTGGGT----------- | 23 | - | - | - | - | - | - | 1 | - | |
| ---------------TAGTGCACAGGGGACATAGA----------------------------------------- | 20 | - | - | - | - | - | - | 1 | - | |
| -----------------------AGGGGACATAGATGACCTT---------------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| ------TGTAGGACTTAGTGCACAGGGGAC---------------------------------------------- | 24 | - | - | - | - | - | - | 1 | - | |
| --------------------------GGACATAGATGACCTTTAA------------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| -----------------------------------TGACCTTTAACCTGTCATTCCA------------------- | 22 | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------------TCATTCCAGCCTGGGTTGCC------- | 20 | - | - | - | - | - | - | 1 | - | |
| ----------GGACTTAGTGCACAGGGG------------------------------------------------ | 18 | - | - | - | - | - | - | 1 | - | |
| rat | actgcctgTAGGACTTAGTGCACAGGGGACATAGATGACCTTTAACCTGTCAttccagcctgggttgcctgcccag | |||||||||
| **************************************************************************** | ||||||||||
| rat | .(((...(((((((((((.(((((((......((.....))....))))).......))))))))..))))).))) | 0.410 -18.61 | ||||||||
| rat | chromosome:20:5562508:5562583:1 | intergenic |
novel_cloningHIGH_5varHIGH_mirtron (1 loci)
block96947 [novel_cloningHIGH_5varHIGH_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.042 | no | no | 0.62/0.72 | 18/24/0.77 | 1.2 | 1.8 | 146 | 0 | 8 | 0 | 19 | 6 | 3arm | 1 | 0 | 0.17 | 1 | 289 | 8 | na | na |
| reads | miRBase family seed | |||||||||
| seed | -------------------------------------------------------CCUCUCA------------------------------------ | 127 | novel | |||||||
| seed | ----------------------------------------------------------CUCACCU--------------------------------- | 83 | novel | |||||||
| seed | -----------------------------------------------------------UCACCUC-------------------------------- | 34 | novel | |||||||
| seed | ---------------------------------------------------------UCUCACC---------------------------------- | 33 | novel | |||||||
| seed | --------------------------------------------------------CUCUCAC----------------------------------- | 11 | novel | |||||||
| seed | ------------------------------------------------------------CACCUCC------------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S2 | T4S1 | T4S2 | T5S2 | |||
| ------------------------------------------------------CCCTCTCACCTCCCGCTCTCCAC--------------------- | 23 | 32 | 19 | 1 | 1 | - | - | 1 | - | |
| ------------------------------------------------------CCCTCTCACCTCCCGCTC-------------------------- | 18 | 16 | 19 | - | - | 1 | - | - | 1 | |
| ---------------------------------------------------------TCTCACCTCCCGCTCTCCACAG------------------- | 22 | 20 | 15 | - | - | - | 1 | - | - | |
| ---------------------------------------------------------TCTCACCTCCCGCTCTCCACA-------------------- | 21 | 14 | 11 | - | - | - | - | - | - | |
| --------------------------------------------------------CTCTCACCTCCCGCTCTCCACA-------------------- | 22 | 9 | 5 | - | - | - | - | - | - | |
| ----------------------------------------------------------CTCACCTCCCGCTCTCCACAG------------------- | 21 | 7 | 6 | - | - | - | - | - | - | |
| ------------------------------------------------------CCCTCTCACCTCCCGCTCTCC----------------------- | 21 | 8 | 5 | - | - | - | - | - | - | |
| ------------------------------------------------------CCCTCTCACCTCCCGCTCTC------------------------ | 20 | 5 | 6 | - | - | - | - | - | 1 | |
| ---------------------------------------------------------TCTCACCTCCCGCTCTCC----------------------- | 18 | 8 | 1 | - | - | - | - | 1 | - | |
| ----------------------------------------------------------CTCACCTCCCGCTCTCCACA-------------------- | 20 | 8 | 2 | - | - | - | - | - | - | |
| --------------------------------------------------------CTCTCACCTCCCGCTCTCCAC--------------------- | 21 | 4 | 4 | - | - | - | - | - | - | |
| ---------------------------------------------------------TCTCACCTCCCGCTCTCCAC--------------------- | 20 | 5 | 3 | - | - | - | - | - | - | |
| -------------------------------------------------------CCTCTCACCTCCCGCTCTCCAC--------------------- | 22 | 3 | 3 | - | - | - | - | - | - | |
| ------------------------------------------------------CCCTCTCACCTCCCGCTCTCCACA-------------------- | 24 | 3 | 3 | - | - | - | - | - | - | |
| ----------------------------------------------------------CTCACCTCCCGCTCTCCA---------------------- | 18 | 2 | 3 | - | - | - | - | - | - | |
| --------------------------------------------------------CTCTCACCTCCCGCTCTCCA---------------------- | 20 | 4 | 1 | - | - | - | - | - | - | |
| ----------------------------------------------------------CTCACCTCCCGCTCTCCAC--------------------- | 19 | 3 | 1 | - | - | - | - | - | - | |
| --------------------------------------------------------CTCTCACCTCCCGCTCTC------------------------ | 18 | 1 | 3 | - | - | - | - | - | - | |
| ---------------------------------------------------------TCTCACCTCCCGCTCTCCA---------------------- | 19 | 2 | 1 | - | - | - | - | - | - | |
| -------------------------------------------------------CCTCTCACCTCCCGCTCTCCACA-------------------- | 23 | 3 | - | - | - | - | - | - | - | |
| ------------------------------------------------------CCCTCTCACCTCCCGCTCTCCA---------------------- | 22 | - | 2 | - | 1 | - | - | - | - | |
| ------------------------------------------------------CCCTCTCACCTCCCGCTCT------------------------- | 19 | 2 | - | - | - | - | - | - | - | |
| ----------------------------------------------------------CTCACCTCCCGCTCTCCACAGG------------------ | 22 | 1 | 1 | - | - | - | - | - | - | |
| ---------------------------------------------------------TCTCACCTCCCGCTCTCCACAGG------------------ | 23 | 1 | - | - | - | - | - | - | - | |
| -------------------------------------------------------CCTCTCACCTCCCGCTCTCCA---------------------- | 21 | 1 | - | - | - | - | - | - | - | |
| --------------------------------------------------------CTCTCACCTCCCGCTCTCC----------------------- | 19 | - | - | - | - | 1 | - | - | - | |
| -------------------------------------------------------CCTCTCACCTCCCGCTCTC------------------------ | 19 | 1 | - | - | - | - | - | - | - | |
| -----------------------------------------------------------TCACCTCCCGCTCTCCACAG------------------- | 20 | - | 1 | - | - | - | - | - | - | |
| --------------------------------------------------------CTCTCACCTCCCGCTCTCCACAG------------------- | 23 | - | 1 | - | - | - | - | - | - | |
| rat | ggatgcagggaaccaggtaagagaggggaagggggcggggctggacagctaggcCCCTCTCACCTCCCGCTCTCCACAGgctgcctgtttgcagtccc | |||||||||
| ************************************************************************************************** | ||||||||||
| >>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000003758 ENSRNOG00000002753 NP_001101770.1 | |||||||||
| rat | (((((((((....((((((.((((((((.((((((.((((((((....)))).)))).))).)))))).))))).......)))))))))))).))). | 0.740 -46.00 | ||||||||
| rat | chromosome:10:91890974:91891071:1 | Same_strand|Boundary_coding|ENSRNOT00000003758|ENSRNOG00000002753 ## ENSRNOG00000002753|protein_coding|NP_001101770.1|a disintegrin and metallopeptidase domain 11 [Source:RefSeq_peptide;Acc:NP_001101770] |
novel_cloningHIGH_5varHIGH_mirtron_bulgeHIGH (1 loci)
block2122753 [novel_cloningHIGH_5varHIGH_mirtron_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.642 | no | no | 0.57/0.68 | 18/25/0.70 | 1.8 | 3.8 | 41 | 0 | 7 | 0 | 5 | 19 | 5arm | 1 | 0 | 0.27 | 4 | 70 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | ------CCCUGAC------------------------------------------------------------------------------------------ | 35 | novel | ||||||
| seed | ---------UGACCGU--------------------------------------------------------------------------------------- | 33 | novel | ||||||
| seed | --------CUGACCG---------------------------------------------------------------------------------------- | 2 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T4S1 | T4S2 | |||
| --------CTGACCGTGTGACCCCACTTAG------------------------------------------------------------------------- | 22 | 6 | 7 | 3 | 1 | - | - | - | |
| -----TCCCTGACCGTGTGACCCC------------------------------------------------------------------------------- | 19 | 9 | - | - | 1 | - | 1 | - | |
| --------CTGACCGTGTGACCCCACTTAGA------------------------------------------------------------------------ | 23 | 2 | - | 4 | 1 | - | - | - | |
| -----TCCCTGACCGTGTGACCCCACT---------------------------------------------------------------------------- | 22 | 2 | 3 | 1 | - | - | 1 | - | |
| -----TCCCTGACCGTGTGACCCCAC----------------------------------------------------------------------------- | 21 | 5 | 1 | - | - | - | - | - | |
| --------CTGACCGTGTGACCCCACT---------------------------------------------------------------------------- | 19 | 1 | - | - | 4 | - | - | - | |
| -----TCCCTGACCGTGTGACCCCACTT--------------------------------------------------------------------------- | 23 | 1 | 1 | - | - | 2 | - | - | |
| -----TCCCTGACCGTGTGACCCCA------------------------------------------------------------------------------ | 20 | 1 | - | - | 2 | - | - | - | |
| --------CTGACCGTGTGACCCCACTT--------------------------------------------------------------------------- | 20 | - | - | 1 | 1 | - | - | - | |
| -----TCCCTGACCGTGTGACCC-------------------------------------------------------------------------------- | 18 | - | - | - | - | 1 | - | 1 | |
| -----TCCCTGACCGTGTGACCCCACTTAG------------------------------------------------------------------------- | 25 | - | - | 1 | - | - | - | - | |
| --------CTGACCGTGTGACCCCAC----------------------------------------------------------------------------- | 18 | - | 1 | - | - | - | - | - | |
| -----TCCCTGACCGTGTGACCCCACTTA-------------------------------------------------------------------------- | 24 | - | - | 1 | - | - | - | - | |
| --------CTGACCGTGTGACCCCACTTA-------------------------------------------------------------------------- | 21 | - | - | - | - | 1 | - | - | |
| -------CCTGACCGTGTGACCCCACTTAG------------------------------------------------------------------------- | 23 | 1 | - | - | - | - | - | - | |
| -------CCTGACCGTGTGACCCCAC----------------------------------------------------------------------------- | 19 | - | 1 | - | - | - | - | - | |
| rat | ggcagTCCCTGACCGTGTGACCCCACTTAGAtttcagggctgaagatgccgaggggcattgccatcgactgggtggctgggaatgtgtactggaccgactccg | ||||||||
| ******************************************************************************************************* | |||||||||
| +++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000031005 ENSRNOG00000025053 Lrp1 | ||||||||
| rat | ((.((((((..(((((....((((((((((...((..(((....((((((....)))))))))...))))))))))..))..))).))...))...)))))). | 0.700 -33.30 | |||||||
| rat | chromosome:7:67525428:67525530:-1 | Same_strand|Boundary_coding|ENSRNOT00000031005|ENSRNOG00000025053 ## ENSRNOG00000025053|protein_coding|Lrp1|Lrp1 protein (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q5I0H1] |
novel_cloningHIGH_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH (1 loci)
sblock6725 [novel_cloningHIGH_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.150 | no | no | 0.32/0.55 | 18/26/0.88 | 0.0 0.0 | 0.0 1.2 | 187 22 | 0 0 | 7 6 | 0 0 | 43 26 | -17 -5 | 3arm_loop 3arm_loop | 1 1 | nd nd | 0.80 0.40 | 16 4 | 269 | 9 | 0 | 0 |
| reads | miRBase family seed | ||||||||||
| seed | ---------------------------------------------CCAACAA------------------------------------------------------- | 219 | novel | ||||||||
| seed | ---------------------------------------------------------CAGAUUC------------------------------------------- | 29 | novel | ||||||||
| seed | -----------------------------GUGCUCU----------------------------------------------------------------------- | 5 | novel | ||||||||
| seed | ------------------------AGGCUGU---------------------------------------------------------------------------- | 4 | novel | ||||||||
| seed | ----------------------------------------------CAACAAA------------------------------------------------------ | 3 | miR-7a* | ||||||||
| seed | -------------------------------------------AUCCAAC--------------------------------------------------------- | 2 | novel | ||||||||
| seed | ------------------------------------CGAAAGU---------------------------------------------------------------- | 1 | novel | ||||||||
| seed | ------------------------------------------------------AAUCAGA---------------------------------------------- | 1 | novel | ||||||||
| seed | ----------------------------------------------------------AGAUUCG------------------------------------------ | 1 | novel | ||||||||
| seed | ---------------------------CUGUGCU------------------------------------------------------------------------- | 1 | novel | ||||||||
| seed | ----------------------------------CUCGAAA------------------------------------------------------------------ | 1 | novel | ||||||||
| seed | -------------------------GGCUGUG--------------------------------------------------------------------------- | 1 | novel | ||||||||
| seed | -------------------------------------------------------AUCAGAU--------------------------------------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --------------------------------------------TCCAACAAAGAATCAGATTC------------------------------------------- | 20 | 13 | 3 | - | - | - | 1 | - | 187 | 1 | |
| --------------------------------------------TCCAACAAAGAATCAGATT-------------------------------------------- | 19 | - | 1 | - | - | - | - | - | 12 | - | |
| --------------------------------------------------------TCAGATTCGATAGACCCCAGAG----------------------------- | 22 | 2 | - | - | - | - | - | - | 6 | - | |
| --------------------------------------------------------TCAGATTCGATAGACCCCAGAGCCT-------------------------- | 25 | - | 1 | - | 1 | - | - | - | 4 | - | |
| --------------------------------------------------------TCAGATTCGATAGACCCCAGA------------------------------ | 21 | - | - | - | - | - | - | - | 4 | 2 | |
| --------------------------------------------------------TCAGATTCGATAGACCCCAGAGCC--------------------------- | 24 | 2 | - | - | - | 1 | - | - | 2 | - | |
| -----------------------CAGGCTGTGCTCTCGAAAGT---------------------------------------------------------------- | 20 | - | 1 | - | - | - | 1 | - | 2 | - | |
| ---------------------------------------------CCAACAAAGAATCAGATTC------------------------------------------- | 19 | - | - | - | - | - | - | - | 3 | - | |
| ------------------------------------------TATCCAACAAAGAATCAGA---------------------------------------------- | 19 | - | - | - | - | - | - | - | 2 | - | |
| ----------------------------TGTGCTCTCGAAAGTATCCAACA-------------------------------------------------------- | 23 | - | - | - | - | - | - | - | 2 | - | |
| --------------------------------------------------------TCAGATTCGATAGACCCC--------------------------------- | 18 | 1 | - | - | - | - | - | - | 1 | - | |
| ----------------------------TGTGCTCTCGAAAGTATCC------------------------------------------------------------ | 19 | - | 1 | 1 | - | - | - | - | - | - | |
| ------------------------AGGCTGTGCTCTCGAAAGT---------------------------------------------------------------- | 19 | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------------------TCAGATTCGATAGACCCCA-------------------------------- | 19 | - | - | - | - | - | - | - | 1 | - | |
| ----------------------------TGTGCTCTCGAAAGTATCCA----------------------------------------------------------- | 20 | - | - | - | - | - | - | 1 | - | - | |
| -----------------------------------TCGAAAGTATCCAACAAAGAATCAGA---------------------------------------------- | 26 | - | - | - | - | - | - | - | 1 | - | |
| --------------------------GCTGTGCTCTCGAAAGTATC------------------------------------------------------------- | 20 | - | 1 | - | - | - | - | - | - | - | |
| --------------------------------------------TCCAACAAAGAATCAGAT--------------------------------------------- | 18 | - | - | - | - | - | - | - | 1 | - | |
| ---------------------------------------------------------CAGATTCGATAGACCCCAGAG----------------------------- | 21 | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------GAATCAGATTCGATAGACCCCAGA------------------------------ | 24 | - | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------AATCAGATTCGATAGACCCCAGAG----------------------------- | 24 | - | - | - | - | - | - | - | 1 | - | |
| ---------------------------------TCTCGAAAGTATCCAACAAAGAA--------------------------------------------------- | 23 | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------------------TCAGATTCGATAGACCCCAG------------------------------- | 20 | - | - | - | - | - | - | - | - | 1 | |
| rat | cagtgaaaatgccatgcttggggcaggctgtgctctcgaaagtaTCCAACAAAGAATCAGATTCgatagaccccagagcctgacccagggccaaggggcagcctctg | ||||||||||
| *********************************************************************************************************** | |||||||||||
| rat | (((......((((..(((..(((((((((.((((.(((((.....................))))).))....)).)))))).)))..))).....))))....))) | 0.900 -33.10 | |||||||||
| rat | chromosome:20:5514210:5514316:-1 | intergenic |
novel_cloningHIGH_Multihit_loopOverlap (1 loci)
block963279 [novel_cloningHIGH_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.356 | no | no | 0.35/0.39 | 18/23/0.98 | 0.0 0.0 | 0.0 0.0 | 45 1 | 0 0 | 3 1 | 0 0 | 27 16 | -2 9 | 3arm_loop 3arm | 19 22 | nd nd | 0.35 0.26 | 6 3 | 52 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -----------------------------------------------------------AGCACGU------------------------------------------ | 51 | novel | ||
| seed | ----------------------------------------------------------------------UGUUACA------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T3S1 | T5S1 | |||
| ----------------------------------------------------------TAGCACGTCTATTGTTACAAAGT--------------------------- | 23 | 4 | 1 | 45 | |
| ----------------------------------------------------------TAGCACGTCTATTGTTAC-------------------------------- | 18 | - | - | 1 | |
| ---------------------------------------------------------------------TTGTTACAAAGTAGTCCACTGTC---------------- | 23 | - | - | 1 | |
| rat | actgttggagtacctcaactataaaaaggacctctactattgtacaacccccttgtcaTAGCACGTCTATTGTTACAAAGTagtccactgtcaaaggacctccagggt | ||||
| ************************************************************************************************************ | |||||
| ---------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000040973 ENSRNOG00000033340 RGD1561446_predicted | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000046337 ENSRNOG00000033340 RGD1561446_predicted | ||||
| rat | ....((((((..(((..((........((((...((((.((((((((......(((....)))......)))).))))))))))))...))...)))..))))))... | 0.720 -19.60 | |||
| rat | chromosome:1:51653623:51653730:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Same_strand|Boundary_non-coding|ENSRNOT00000048434|ENSRNOG00000033340 ## Same_strand|Intronic_non-coding|ENSRNOT00000046337|ENSRNOG00000033340 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| ## ENSRNOG00000033340|protein_coding|RGD1561446_predicted| |
novel_cloningHIGH_loopOverlap_bulgeHIGH (1 loci)
block1600582 [novel_cloningHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.584 | no | no | 0.37/0.42 | 18/23/0.87 | 0.0 | 0.0 | 64 | 0 | 4 | 0 | 46 | -17 | 5arm_loop_3arm | 1 | nd | 0.25 | 4 | 83 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -----------------------------------------------GACUAAU-------------------------------------------- | 73 | novel | |||
| seed | --------------------------------------------CCUGACU----------------------------------------------- | 5 | novel | |||
| seed | ---------------------------------------------------AAUCAAG---------------------------------------- | 2 | novel | |||
| seed | ------------------------------------------------ACUAAUC------------------------------------------- | 2 | novel | |||
| seed | ---------------------------------------AUGGUCC---------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T3S2 | T4S1 | T5S1 | |||
| ----------------------------------------------TGACTAATCAAGACTGCTTG-------------------------------- | 20 | 4 | - | 1 | 64 | |
| -------------------------------------------TCCTGACTAATCAAGACTG------------------------------------ | 19 | - | - | 1 | 3 | |
| ----------------------------------------------TGACTAATCAAGACTGCT---------------------------------- | 18 | - | - | - | 3 | |
| --------------------------------------------------TAATCAAGACTGCTTGCTGAACT------------------------- | 23 | - | - | - | 2 | |
| -----------------------------------------------GACTAATCAAGACTGCTTG-------------------------------- | 19 | 2 | - | - | - | |
| --------------------------------------TATGGTCCTGACTAATCAAGACT------------------------------------- | 23 | - | - | - | 1 | |
| -------------------------------------------TCCTGACTAATCAAGACT------------------------------------- | 18 | - | 1 | - | - | |
| ----------------------------------------------TGACTAATCAAGACTGCTT--------------------------------- | 19 | - | - | - | 1 | |
| rat | ggatggcctttaatgttgccttatgctgtctgtgggcttatggtccTGACTAATCAAGACTGCTTGctgaactaacatggcaggtctgacggactccc | |||||
| ************************************************************************************************** | ||||||
| rat | (((...((.(((...(((((........((.((((((....((((.(((....))).)))))))))).))........)))))...))).))..))). | 0.430 -23.89 | ||||
| rat | chromosome:4:164243406:164243503:-1 | intergenic |
novel_cloningHIGH_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH (1 loci)
block770082 [novel_cloningHIGH_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.48/0.57 | 18/25/0.92 | 0.0 3.8 | 0.0 3.6 | 104 13 | 0 0 | 10 4 | 0 0 | 31 14 | -1 6 | 3arm 3arm | 1 1 | nd nd | 0.45 0.40 | 5 5 | 172 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | -------------------------------------------------------CACACAC------------------------------------------- | 136 | novel | |||||||||
| seed | ----------------------------------------------------CCUCACA---------------------------------------------- | 7 | novel | |||||||||
| seed | ----------------------------------------------------------ACACAGG---------------------------------------- | 7 | novel | |||||||||
| seed | ---------------------------------------------------------CACACAG----------------------------------------- | 4 | novel | |||||||||
| seed | ----------------------------------------------------------------------CUGAUGG---------------------------- | 4 | novel | |||||||||
| seed | ----------------------------------------------------------------GAACCAC---------------------------------- | 3 | novel | |||||||||
| seed | --------------------------------------------------------ACACACA------------------------------------------ | 3 | novel | |||||||||
| seed | ------------------------------------------------------UCACACA-------------------------------------------- | 2 | miR-377 | |||||||||
| seed | ------------------------------------------------------------------ACCACUG-------------------------------- | 2 | novel | |||||||||
| seed | -------------------------------------------------------------------CCACUGA------------------------------- | 1 | novel | |||||||||
| seed | --------------------------------------------------------------AGGAACC------------------------------------ | 1 | novel | |||||||||
| seed | -----------------------------------------------------------------AACCACU--------------------------------- | 1 | novel | |||||||||
| seed | ---------------------------------------------------------------GGAACCA----------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------------------------------------------------TCACACACAGGAACCACTGA------------------------------- | 20 | 6 | 5 | 5 | 3 | 1 | 1 | 3 | 5 | 104 | 2 | |
| ---------------------------------------------------------CACACAGGAACCACTGATG----------------------------- | 19 | - | - | - | 1 | - | - | - | - | 6 | - | |
| ---------------------------------------------------TCCTCACACACAGGAACCACTGA------------------------------- | 23 | 1 | 1 | - | - | - | - | - | - | 4 | - | |
| --------------------------------------------------------ACACACAGGAACCACTGATG----------------------------- | 20 | - | - | - | - | - | - | - | - | 3 | - | |
| -------------------------------------------------------CACACACAGGAACCACTGA------------------------------- | 19 | - | - | - | - | - | - | - | - | 3 | - | |
| ---------------------------------------------------------------GGAACCACTGATGGAACCCACAG------------------- | 23 | - | - | 1 | - | - | - | - | 1 | 1 | - | |
| ---------------------------------------------------------------------ACTGATGGAACCCACAGCCTCA-------------- | 22 | - | - | - | - | - | - | - | - | 3 | - | |
| -----------------------------------------------------CTCACACACAGGAACCACTGA------------------------------- | 21 | - | - | - | - | - | - | - | - | 2 | - | |
| -------------------------------------------------------------CAGGAACCACTGATGGAACC------------------------ | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------------------------AGGAACCACTGATGGAACCCACAG------------------- | 24 | - | - | - | - | - | - | - | - | 1 | - | |
| ---------------------------------------------------TCCTCACACACAGGAACCA----------------------------------- | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------------------AACCACTGATGGAACCCACAGCCTC--------------- | 25 | - | 1 | - | - | - | - | - | - | - | - | |
| ------------------------------------------------------------------ACCACTGATGGAACCCACAG------------------- | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------TCACACACAGGAACCACT--------------------------------- | 18 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------------------AACCACTGATGGAACCCACAG------------------- | 21 | - | - | 1 | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------GAACCACTGATGGAACCCACAG------------------- | 22 | - | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------------------ACACACAGGAACCACTGATGGAA-------------------------- | 23 | - | - | - | - | - | - | 1 | - | - | - | |
| ---------------------------------------------------------------------ACTGATGGAACCCACAGCCTC--------------- | 21 | - | - | - | - | - | - | - | - | 1 | - | |
| rat | ttcttcttcctctttgtgacatgggttccttgccttgcctcccgtgcgtgctccTCACACACAGGAACCACTGAtggaacccacagcctcattccttgaagagaa | |||||||||||
| ********************************************************************************************************* | ||||||||||||
| rat | .((.(((((......((((..((((((((......((..(((.(((.(((.....))).))).)))..)).....)))))))).....)))).....))))))). | 0.930 -30.70 | ||||||||||
| rat | chromosome:19:15929712:15929816:-1 | intergenic |
novel_cloningHIGH_mirtron_bulgeHIGH (1 loci)
block2082989 [novel_cloningHIGH_mirtron_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.040 | no | no | 0.57/0.67 | 18/25/0.74 | 0.0 | 0.1 | 45 | 0 | 10 | 0 | 28 | 7 | 3arm | 1 | 0 | 0.29 | 4 | 140 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | --------------------------------------------------------------------CUGACCC------------------------------------------ | 104 | novel | |||||||||
| seed | ---------------------------------------------------------------------UGACCCU----------------------------------------- | 16 | novel | |||||||||
| seed | ----------------------------------------------------------------------GACCCUA---------------------------------------- | 12 | novel | |||||||||
| seed | -------------------------------------------------------------------UCUGACC------------------------------------------- | 4 | novel | |||||||||
| seed | -----------------------------------------------------------------------ACCCUAU--------------------------------------- | 2 | novel | |||||||||
| seed | -----------------------------------------------------------CCCCGAG--------------------------------------------------- | 1 | novel | |||||||||
| seed | --------------------------------------------------------------CGAGCUC------------------------------------------------ | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------------------------------------------------------------------TCTGACCCTATGTCCCCCACAG---------------------------- | 22 | 15 | 7 | 3 | 1 | 7 | 5 | 4 | 2 | 5 | - | |
| -------------------------------------------------------------------TCTGACCCTATGTCCCCCACA----------------------------- | 21 | 6 | - | - | 2 | - | - | 2 | 1 | 2 | 2 | |
| -------------------------------------------------------------------TCTGACCCTATGTCCCCC-------------------------------- | 18 | 3 | 3 | - | 2 | 2 | - | 1 | 1 | 1 | 2 | |
| -------------------------------------------------------------------TCTGACCCTATGTCCCCCA------------------------------- | 19 | 3 | 2 | - | - | 1 | - | 4 | 1 | - | - | |
| ---------------------------------------------------------------------TGACCCTATGTCCCCCACAG---------------------------- | 20 | 2 | 3 | - | - | 1 | - | 1 | 1 | - | 2 | |
| --------------------------------------------------------------------CTGACCCTATGTCCCCCACAG---------------------------- | 21 | 3 | 2 | - | - | - | 3 | - | - | - | - | |
| -------------------------------------------------------------------TCTGACCCTATGTCCCCCAC------------------------------ | 20 | 2 | 3 | - | 1 | 1 | - | - | - | - | - | |
| -------------------------------------------------------------------TCTGACCCTATGTCCCCCACAGCC-------------------------- | 24 | - | 3 | - | - | 1 | - | 1 | - | - | - | |
| --------------------------------------------------------------------CTGACCCTATGTCCCCCAC------------------------------ | 19 | - | 3 | - | - | - | - | - | - | - | - | |
| ------------------------------------------------------------------CTCTGACCCTATGTCCCCCAC------------------------------ | 21 | 1 | 1 | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------------------------------CTGACCCTATGTCCCCCA------------------------------- | 18 | 1 | - | - | 1 | - | - | - | - | 1 | - | |
| ----------------------------------------------------------------------GACCCTATGTCCCCCACAG---------------------------- | 19 | - | - | - | 2 | - | - | - | - | - | - | |
| --------------------------------------------------------------------CTGACCCTATGTCCCCCACAGCC-------------------------- | 23 | 2 | - | - | - | - | - | - | - | - | - | |
| -------------------------------------------------------------------TCTGACCCTATGTCCCCCACAGC--------------------------- | 23 | - | - | - | - | 1 | - | - | - | 1 | - | |
| ---------------------------------------------------------------------TGACCCTATGTCCCCCACA----------------------------- | 19 | - | - | - | - | - | - | - | 1 | - | - | |
| ---------------------------------------------------------------------TGACCCTATGTCCCCCAC------------------------------ | 18 | - | - | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------------------CTCTGACCCTATGTCCCCCACA----------------------------- | 22 | - | 1 | - | - | - | - | - | - | - | - | |
| -------------------------------------------------------------CCGAGCTCTGACCCTATGTCCCCC-------------------------------- | 24 | - | - | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------------ACCCCGAGCTCTGACCCTATGTCCC---------------------------------- | 25 | - | - | - | - | - | - | - | - | 1 | - | |
| rat | agaaccgtgaggacagaggtgggtattactgtggggtcctggggagggaagttctggcaccccgagcTCTGACCCTATGTCCCCCACAGccgccctactccgaaccttcagctttct | |||||||||||
| ********************************************************************************************************************* | ||||||||||||
| >>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000026341 ENSRNOG00000019459 Oaz1 | |||||||||||
| rat | ((((...(((((...(((..((((....((((((((...(((((..((.(((((.((...)).)))))))..)))))....))))))))..))))..))).....)))))...)))) | 0.590 -43.50 | ||||||||||
| rat | chromosome:7:10394885:10395001:-1 | Same_strand|Boundary_coding|ENSRNOT00000026341|ENSRNOG00000019459 ## ENSRNOG00000019459|protein_coding|Oaz1|Ornithine decarboxylase antizyme (ODC-Az). [Source:UniProtKB/Swiss-Prot;Acc:P54370] |
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