other hairpins
novel_cloningHIGH_mirtron_bulgeHIGH (1 loci)
novel_cloningHIGH_multiarm_DicerNOK_5varHIGH_loopOverlap (1 loci)
sblock3314 [novel_cloningHIGH_multiarm_DicerNOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.717 | no | no | 0.36/0.56 | 18/26/0.77 | 1.2 0.0 0.0 0.0 0.6 1.0 | 1.1 0.0 0.0 0.0 1.2 1.0 | 58 1 26 2 5 5 | 0 0 0 0 0 0 | 6 1 2 1 1 1 | 0 0 0 0 0 0 | 0 31 43 48 34 19 | 37 5 -2 -7 -10 2 | 5arm 5arm 5arm 5arm_loop 3arm_loop 3arm | 2 2 2 2 2 2 | nd nd nd nd nd nd | 0.73 0.44 0.45 0.60 0.52 0.14 | 13 3 3 8 8 2 | 142 | 6 | 0 | -26 |
| reads | miRBase family seed | |||||||
| seed | ---AGAAAGA------------------------------------------------------------------------------------------------------------- | 52 | novel | |||||
| seed | -ACAGAAA--------------------------------------------------------------------------------------------------------------- | 38 | novel | |||||
| seed | --------------------------------------------AAGCUGA-------------------------------------------------------------------- | 31 | novel | |||||
| seed | ----GAAAGAU------------------------------------------------------------------------------------------------------------ | 3 | novel | |||||
| seed | ---------------------------------------------------------------AUGACGA------------------------------------------------- | 3 | novel | |||||
| seed | ---------------------------------------------------------------------------CCCUGCU------------------------------------- | 3 | novel | |||||
| seed | ---------------------------------------------AGCUGAG------------------------------------------------------------------- | 2 | novel | |||||
| seed | -------------------------------------------------GAGUUUU--------------------------------------------------------------- | 2 | novel | |||||
| seed | -------------------------------------------------------------------------------GCUGAGU--------------------------------- | 1 | novel | |||||
| seed | --------------------------------AAGAUGA-------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | --CAGAAAG-------------------------------------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | --------------------------------------------------------------UAUGACG-------------------------------------------------- | 1 | novel | |||||
| seed | -------------------------------------------UAAGCUG--------------------------------------------------------------------- | 1 | novel | |||||
| seed | --------------------------------------------------------------------------UCCCUGC-------------------------------------- | 1 | novel | |||||
| seed | -----------------------------------------------------------------GACGAAC----------------------------------------------- | 1 | novel | |||||
| seed | -----AAAGAUA----------------------------------------------------------------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S2 | T4S1 | T4S2 | T5S1 | |||
| -------------------------------------------TAAGCTGAGTTTTGAAGGCT-------------------------------------------------------- | 20 | - | 3 | - | - | - | 26 | |
| --CAGAAAGATACACAGGGACCCC----------------------------------------------------------------------------------------------- | 22 | 3 | - | - | - | - | 18 | |
| GACAGAAAGATACACAGGGAC-------------------------------------------------------------------------------------------------- | 21 | 1 | - | - | 1 | - | 18 | |
| --CAGAAAGATACACAGGGAC-------------------------------------------------------------------------------------------------- | 19 | 1 | 1 | - | - | 1 | 10 | |
| --CAGAAAGATACACAGGGACCCCAC--------------------------------------------------------------------------------------------- | 24 | 2 | - | 1 | - | - | 4 | |
| --CAGAAAGATACACAGGGACC------------------------------------------------------------------------------------------------- | 20 | - | - | - | - | - | 6 | |
| GACAGAAAGATACACAGGGACC------------------------------------------------------------------------------------------------- | 22 | - | - | - | - | - | 6 | |
| GACAGAAAGATACACAGGGACCCC----------------------------------------------------------------------------------------------- | 24 | - | - | - | - | - | 5 | |
| --CAGAAAGATACACAGGGACCCCACT-------------------------------------------------------------------------------------------- | 25 | - | - | - | - | - | 4 | |
| --------------------------------------------------------------------------TCCCTGCTGAGTGAACCATAGTCT--------------------- | 24 | - | - | - | - | - | 3 | |
| --------------------------------------------------------------TATGACGAACCTTCCCTGCTGAG---------------------------------- | 23 | - | - | - | - | - | 3 | |
| GACAGAAAGATACACAGGGACCCCAC--------------------------------------------------------------------------------------------- | 26 | - | - | - | - | - | 3 | |
| --------------------------------------------AAGCTGAGTTTTGAAGGCT-------------------------------------------------------- | 19 | - | - | - | - | - | 2 | |
| ------------------------------------------------TGAGTTTTGAAGGCTATGAC--------------------------------------------------- | 20 | - | - | - | - | - | 2 | |
| -------------------------------------------TAAGCTGAGTTTTGAAGGC--------------------------------------------------------- | 19 | - | - | - | - | - | 2 | |
| GACAGAAAGATACACAGG----------------------------------------------------------------------------------------------------- | 18 | - | - | - | - | - | 2 | |
| ---AGAAAGATACACAGGGACC------------------------------------------------------------------------------------------------- | 19 | - | - | - | - | - | 2 | |
| -------------------------------------------------------------------------TTCCCTGCTGAGTGAACCATAG------------------------ | 22 | - | - | - | - | - | 1 | |
| ------------------------------------------TTAAGCTGAGTTTTGAAGG---------------------------------------------------------- | 19 | - | - | - | - | - | 1 | |
| ----GAAAGATACACAGGGACCCCACTGG------------------------------------------------------------------------------------------ | 25 | - | - | - | - | - | 1 | |
| GACAGAAAGATACACAGGGACCC------------------------------------------------------------------------------------------------ | 23 | - | - | - | - | - | 1 | |
| ----------------------------------------------------------------TGACGAACCTTCCCTGCT------------------------------------- | 18 | - | - | - | - | - | 1 | |
| -ACAGAAAGATACACAGGGAC-------------------------------------------------------------------------------------------------- | 20 | - | - | - | - | - | 1 | |
| ---AGAAAGATACACAGGGAC-------------------------------------------------------------------------------------------------- | 18 | 1 | - | - | - | - | - | |
| GACAGAAAGATACACAGGGA--------------------------------------------------------------------------------------------------- | 20 | 1 | - | - | - | - | - | |
| -------------------------------GAAGATGACGTTTAAGCTGAGTTTT--------------------------------------------------------------- | 25 | - | - | - | - | - | 1 | |
| --CAGAAAGATACACAGGGACCCCA---------------------------------------------------------------------------------------------- | 23 | - | - | - | - | - | 1 | |
| -------------------------------------------------------------CTATGACGAACCTTCCCTGCT------------------------------------- | 21 | - | - | - | - | - | 1 | |
| ------------------------------------------------------------------------------TGCTGAGTGAACCATAGTCTCT------------------- | 22 | - | - | - | - | - | 1 | |
| rat | GACAGAAAGATACACAGGGACCCCactggaggaagatgacgttTAAGCTGAGTTTTGAAGGCTatgacgaaccttccctgctgagtgaaccatagtctctaagaagagccgtgggaacc | |||||||
| *********************************************************************************************************************** | ||||||||
| rat | ................((...(((((((((((...(((..((((..(((.(((...(((((..........)))))...))).))))))))))..)))))).........)))))..)) | 0.620 -27.40 | ||||||
| rat | chromosome:12:44282947:44283065:-1 | intergenic |
novel_cloningHIGH_multiarm_DicerNOK_5varHIGH_nonpairedHIGH (1 loci)
sblock3622 [novel_cloningHIGH_multiarm_DicerNOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.850 | no | no | 0.36/0.56 | 18/26/0.76 | 1.2 0.0 0.0 0.0 | 1.1 0.0 0.0 0.0 | 58 1 26 2 | 0 0 0 0 | 6 1 2 1 | 0 0 0 0 | 10 12 5 0 | 0 4 16 21 | 5arm_loop_3arm 3arm 3arm 3arm | 2 2 2 2 | nd nd nd nd | 0.45 0.40 0.35 0.42 | 4 4 3 5 | 132 | 6 | 16 | 11 |
| reads | miRBase family seed | |||||||
| seed | -------------AGAAAGA---------------------------------------------------------- | 52 | novel | |||||
| seed | -----------ACAGAAA------------------------------------------------------------ | 38 | novel | |||||
| seed | ------------------------------------------------------AAGCUGA----------------- | 31 | novel | |||||
| seed | --------------GAAAGAU--------------------------------------------------------- | 3 | novel | |||||
| seed | -------------------------------------------------------AGCUGAG---------------- | 2 | novel | |||||
| seed | -----------------------------------------------------------GAGUUUU------------ | 2 | novel | |||||
| seed | -----------------------------------------------------UAAGCUG------------------ | 1 | novel | |||||
| seed | ---------------AAAGAUA-------------------------------------------------------- | 1 | novel | |||||
| seed | ------------CAGAAAG----------------------------------------------------------- | 1 | novel | |||||
| seed | ------------------------------------------AAGAUGA----------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S2 | T4S1 | T4S2 | T5S1 | |||
| -----------------------------------------------------TAAGCTGAGTTTTGAAGGCT----- | 20 | - | 3 | - | - | - | 26 | |
| ------------CAGAAAGATACACAGGGACCCC-------------------------------------------- | 22 | 3 | - | - | - | - | 18 | |
| ----------GACAGAAAGATACACAGGGAC----------------------------------------------- | 21 | 1 | - | - | 1 | - | 18 | |
| ------------CAGAAAGATACACAGGGAC----------------------------------------------- | 19 | 1 | 1 | - | - | 1 | 10 | |
| ------------CAGAAAGATACACAGGGACCCCAC------------------------------------------ | 24 | 2 | - | 1 | - | - | 4 | |
| ------------CAGAAAGATACACAGGGACC---------------------------------------------- | 20 | - | - | - | - | - | 6 | |
| ----------GACAGAAAGATACACAGGGACC---------------------------------------------- | 22 | - | - | - | - | - | 6 | |
| ----------GACAGAAAGATACACAGGGACCCC-------------------------------------------- | 24 | - | - | - | - | - | 5 | |
| ------------CAGAAAGATACACAGGGACCCCACT----------------------------------------- | 25 | - | - | - | - | - | 4 | |
| ----------GACAGAAAGATACACAGGGACCCCAC------------------------------------------ | 26 | - | - | - | - | - | 3 | |
| ------------------------------------------------------AAGCTGAGTTTTGAAGGCT----- | 19 | - | - | - | - | - | 2 | |
| ----------GACAGAAAGATACACAGG-------------------------------------------------- | 18 | - | - | - | - | - | 2 | |
| ----------------------------------------------------------TGAGTTTTGAAGGCTATGAC | 20 | - | - | - | - | - | 2 | |
| -------------AGAAAGATACACAGGGACC---------------------------------------------- | 19 | - | - | - | - | - | 2 | |
| -----------------------------------------------------TAAGCTGAGTTTTGAAGGC------ | 19 | - | - | - | - | - | 2 | |
| -----------------------------------------GAAGATGACGTTTAAGCTGAGTTTT------------ | 25 | - | - | - | - | - | 1 | |
| -----------ACAGAAAGATACACAGGGAC----------------------------------------------- | 20 | - | - | - | - | - | 1 | |
| -------------AGAAAGATACACAGGGAC----------------------------------------------- | 18 | 1 | - | - | - | - | - | |
| ----------------------------------------------------TTAAGCTGAGTTTTGAAGG------- | 19 | - | - | - | - | - | 1 | |
| --------------GAAAGATACACAGGGACCCCACTGG--------------------------------------- | 25 | - | - | - | - | - | 1 | |
| ------------CAGAAAGATACACAGGGACCCCA------------------------------------------- | 23 | - | - | - | - | - | 1 | |
| ----------GACAGAAAGATACACAGGGACCC--------------------------------------------- | 23 | - | - | - | - | - | 1 | |
| ----------GACAGAAAGATACACAGGGA------------------------------------------------ | 20 | 1 | - | - | - | - | - | |
| rat | ggctcagaatGACAGAAAGATACACAGGGACCCCactggaggaagatgacgttTAAGCTGAGTTTTGAAGGCTatgac | |||||||
| ****************************************************************************** | ||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000056932 ENSRNOG00000037566 RGD1560398_predicted | |||||||
| rat | ((((((((((..(((..((((...((....((((...)).))....))..))))...))).)))))))..)))..... | 0.440 -12.50 | ||||||
| rat | chromosome:12:43049011:43049088:1 | Same_strand|Intronic_non-coding|ENSRNOT00000056932|ENSRNOG00000037566 ## ENSRNOG00000037566|protein_coding|RGD1560398_predicted| |
novel_cloningHIGH_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH (1 loci)
sblock467 [novel_cloningHIGH_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.567 | no | no | 0.43/0.58 | 18/24/0.82 | 0.3 0.0 1.7 | 1.8 0.0 2.7 | 6 57 3 | 0 0 0 | 2 6 2 | 0 0 0 | 34 38 15 | -19 -17 2 | 5arm_loop_3arm 3arm_loop 3arm | 36 36 36 | nd nd nd | 0.74 0.80 0.32 | 17 16 4 | 96 | 6 | 0 | 9 |
| reads | miRBase family seed | |||||||
| seed | ---------------------------------------GCACUUU-------------------------------------------------- | 74 | novel | |||||
| seed | -------------------------------------------------AACCCCU---------------------------------------- | 7 | novel | |||||
| seed | -----------------------------------GCAUGCA------------------------------------------------------ | 4 | novel | |||||
| seed | ----------------------------------------------GAUAACC------------------------------------------- | 2 | novel | |||||
| seed | ----------------------------------------------------------AGCAGAA------------------------------- | 2 | novel | |||||
| seed | ------------------------------------CAUGCAC----------------------------------------------------- | 2 | novel | |||||
| seed | -----------------------------------------ACUUUGA------------------------------------------------ | 1 | novel | |||||
| seed | ---------------------------------------------UGAUAAC-------------------------------------------- | 1 | novel | |||||
| seed | ---------------------------------------------------------------AACUUCC-------------------------- | 1 | novel | |||||
| seed | --------------------------------------------UUGAUAA--------------------------------------------- | 1 | novel | |||||
| seed | ----------------------------------------CACUUUG------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --------------------------------------TGCACTTTGATAACCCCTGT-------------------------------------- | 20 | 2 | 4 | 1 | 4 | 57 | 1 | |
| ------------------------------------------------TAACCCCTGTAGCAGAACT----------------------------- | 19 | - | 1 | 2 | 1 | 3 | - | |
| ---------------------------------------------TGATAACCCCTGTAGCAGA-------------------------------- | 19 | - | - | - | - | 1 | 1 | |
| --------------------------------------TGCACTTTGATAACCCCTG--------------------------------------- | 19 | - | - | - | - | 2 | - | |
| -----------------------------------GCATGCACTTTGATAACC------------------------------------------- | 18 | - | - | - | - | 2 | - | |
| ----------------------------------TGCATGCACTTTGATAACCCCTG--------------------------------------- | 23 | - | - | - | - | 2 | - | |
| --------------------------------------TGCACTTTGATAACCCCTGTAG------------------------------------ | 22 | - | - | - | - | 1 | - | |
| ---------------------------------------GCACTTTGATAACCCCTGT-------------------------------------- | 19 | - | - | - | - | 1 | - | |
| ----------------------------------------CACTTTGATAACCCCTGTAG------------------------------------ | 20 | - | - | - | - | - | 1 | |
| --------------------------------------TGCACTTTGATAACCCCT---------------------------------------- | 18 | - | - | - | - | 1 | - | |
| --------------------------------------------TTGATAACCCCTGTAGCAGA-------------------------------- | 20 | - | - | - | - | 1 | - | |
| ---------------------------------------------------------TAGCAGAACTTCCACTGTC-------------------- | 19 | - | - | - | - | 1 | - | |
| ----------------------------------TGCATGCACTTTGATAACCCC----------------------------------------- | 21 | - | - | - | - | 1 | - | |
| --------------------------------------------------------------GAACTTCCACTGTCCCAGC--------------- | 19 | - | - | - | - | 1 | - | |
| ----------------------------------TGCATGCACTTTGATAACCCCT---------------------------------------- | 22 | - | - | - | - | - | 1 | |
| --------------------------------------TGCACTTTGATAACCCCTGTAGCA---------------------------------- | 24 | - | - | - | - | 1 | - | |
| -------------------------------------------TTTGATAACCCCTGTAGCAGA-------------------------------- | 21 | - | - | - | - | 1 | - | |
| ---------------------------------------------------------TAGCAGAACTTCCACTGTCCCA----------------- | 22 | - | - | 1 | - | - | - | |
| rat | tggtcatgtttggctggcaacattgcttcttcgttgcaTGCACTTTGATAACCCCTGTagcagaacttccactgtcccagcacctgaacgatccca | |||||||
| ************************************************************************************************ | ||||||||
| ---------------------------------------------------------------------------------------------------------- | ENSRNOT00000041486 ENSRNOG00000033456 LOC308198 | |||||||
| rat | .((...(((((.(((((..(((.((....(((((((((.................)))))).)))....)).))).)))))....)))))...)). | 0.750 -18.63 | ||||||
| rat | chromosome:1:52394552:52394647:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000044415|ENSRNOG00000033456 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000041486|ENSRNOG00000033456 ## ENSRNOG00000033456|protein_coding|LOC308198| |
novel_cloningHIGH_multiarm_DicerNOK_bulgeHIGH (1 loci)
sblock5899 [novel_cloningHIGH_multiarm_DicerNOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.075 | no | no | 0.39/0.61 | 18/26/0.79 | 0.0 3.6 0.5 0.0 | 0.0 4.4 3.0 1.5 | 48 7 2 10 | 0 0 0 0 | 10 1 2 3 | 0 0 0 0 | 13 19 48 7 | 24 1 -15 22 | 5arm 5arm 5arm_loop_3arm 3arm | 1 2 2 2 | nd nd nd nd | 0.45 0.42 0.35 0.23 | 4 7 5 4 | 138 | 10 | 1 | 6 |
| reads | miRBase family seed | |||||||||||
| seed | --------------CUCCUUC-------------------------------------------------------------------------------------------- | 94 | novel | |||||||||
| seed | -------------------------------------------------------------------------------------AGUGACU--------------------- | 16 | novel | |||||||||
| seed | ---------------UCCUUCC------------------------------------------------------------------------------------------- | 15 | novel | |||||||||
| seed | -------------GCUCCUU--------------------------------------------------------------------------------------------- | 3 | novel | |||||||||
| seed | -----------------------------CUGAUUU----------------------------------------------------------------------------- | 2 | miR-29a* | |||||||||
| seed | --------------------CCCAAUG-------------------------------------------------------------------------------------- | 2 | novel | |||||||||
| seed | -------------------------------GAUUUCA--------------------------------------------------------------------------- | 2 | novel | |||||||||
| seed | --------------------------------------------------AGUGACG-------------------------------------------------------- | 1 | novel | |||||||||
| seed | -------------------------------------------------UAGUGAC--------------------------------------------------------- | 1 | novel | |||||||||
| seed | ------------GGCUCCU---------------------------------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | --------------------------GAUCUGA-------------------------------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------------GCTCCTTCCCAATGATCTGA-------------------------------------------------------------------------------- | 20 | 7 | 9 | 3 | 5 | - | 7 | 4 | 6 | 48 | - | |
| --------------CTCCTTCCCAATGATCTGA-------------------------------------------------------------------------------- | 19 | 3 | - | - | - | - | 1 | 1 | - | 9 | - | |
| ------------------------------------------------------------------------------------TAGTGACTCATGAAACCAG---------- | 19 | 1 | - | - | - | - | - | - | - | 5 | - | |
| ------------------------------------------------------------------------------------TAGTGACTCATGAAACCAGGGG------- | 22 | - | - | - | - | - | - | - | - | 5 | - | |
| -------------GCTCCTTCCCAATGATCTG--------------------------------------------------------------------------------- | 19 | 1 | - | 1 | - | - | - | - | - | 1 | - | |
| ------------GGCTCCTTCCCAATGATCTGA-------------------------------------------------------------------------------- | 21 | - | - | - | - | - | - | - | 1 | - | 2 | |
| ------------------------------------------------------------------------------------TAGTGACTCATGAAACCA----------- | 18 | 1 | 1 | - | - | - | - | - | - | 1 | - | |
| -------------GCTCCTTCCCAATGATCTGATTT----------------------------------------------------------------------------- | 23 | - | - | - | - | 1 | - | - | - | 1 | - | |
| ----------------------------TCTGATTTCACCTTCTGCCT----------------------------------------------------------------- | 20 | - | - | - | - | - | - | - | - | 2 | - | |
| ------------------------------TGATTTCACCTTCTGCCTTTAGTGAC--------------------------------------------------------- | 26 | - | - | - | - | - | - | - | - | 2 | - | |
| -------------------------TGATCTGATTTCACCTTCTG-------------------------------------------------------------------- | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| -------------------TCCCAATGATCTGATTTCACCT------------------------------------------------------------------------ | 22 | - | - | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------------TAGTGACGCCTCCCGTCATCTGA----------------------------------------- | 23 | - | 1 | - | - | - | - | - | - | - | - | |
| --------------CTCCTTCCCAATGATCTGAT------------------------------------------------------------------------------- | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------------TTAGTGACGCCTCCCGTC----------------------------------------------- | 18 | - | - | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------------------------------------TAGTGACTCATGAAACCAGG--------- | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------TGGCTCCTTCCCAATGATCTGA-------------------------------------------------------------------------------- | 22 | - | - | - | - | 1 | - | - | - | - | - | |
| ------------------------------------------------------------------------------------TAGTGACTCATGAAACCAGGG-------- | 21 | - | - | - | - | - | - | - | - | 1 | - | |
| -------------------TCCCAATGATCTGATTTCACCTTC---------------------------------------------------------------------- | 24 | - | - | - | - | - | - | - | - | 1 | - | |
| rat | cctgtggctcttgGCTCCTTCCCAATGATCTGAtttcaccttctgcctttagtgacgcctcccgtcatctgaggaacttgactttagtgactcatgaaaccaggggctgaagg | |||||||||||
| ***************************************************************************************************************** | ||||||||||||
| rat | (((.((((((((((....(((...((((.((((..(((.......((((..((((((.....))))))..))))....)))..))))....))))))).)))))))))).))) | 0.960 -33.10 | ||||||||||
| rat | chromosome:19:40008064:40008176:1 | intergenic |
novel_cloningHIGH_multiarm_DicerNOK_loopOverlap_bulgeHIGH (1 loci)
sblock159 [novel_cloningHIGH_multiarm_DicerNOK_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.025 | no | no | 0.35/0.45 | 18/25/0.93 | 1.7 0.4 0.0 1.0 | 0.0 0.0 0.0 0.5 | 3 35 4 2 | 0 0 0 0 | 1 3 2 2 | 0 0 0 0 | 2 33 18 9 | 10 -20 4 15 | 5arm 5arm_loop_3arm 3arm 3arm | 1 5 5 5 | nd nd nd nd | 0.28 0.54 0.46 0.48 | 4 9 4 8 | 54 | 4 | -9 | -6 |
| reads | miRBase family seed | |||||
| seed | ----------------------------------UGGAAGA--------------------------------------------------- | 25 | novel | |||
| seed | -----------------------------------GGAAGAU-------------------------------------------------- | 18 | novel | |||
| seed | ---------------------------------------------------GUGUCUA---------------------------------- | 5 | novel | |||
| seed | --------AAGAUCA----------------------------------------------------------------------------- | 2 | novel | |||
| seed | ----------------------------------------------------------------ACUCACU--------------------- | 1 | novel | |||
| seed | -----------------------------------------------------GUCUACA-------------------------------- | 1 | novel | |||
| seed | ---GGCUUAA---------------------------------------------------------------------------------- | 1 | novel | |||
| seed | --------------------------------------------------------------GUACUCA----------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T3S1 | T5S1 | |||
| ---------------------------------TTGGAAGATGAGACCAATGTGTCT----------------------------------- | 24 | - | 1 | 1 | 21 | |
| ----------------------------------TGGAAGATGAGACCAATGTGTCT----------------------------------- | 23 | - | - | - | 14 | |
| --------------------------------------------------TGTGTCTACAGTGTACTCACTTCT------------------ | 24 | - | - | - | 4 | |
| -------TAAGATCATAGTCAGACACT----------------------------------------------------------------- | 20 | - | - | - | 2 | |
| ----------------------------------TGGAAGATGAGACCAATGT--------------------------------------- | 19 | - | - | - | 2 | |
| ---------------------------------------------------------------TACTCACTTCTATTCCTCTT--------- | 20 | 1 | - | - | - | |
| ----------------------------------------------------TGTCTACAGTGTACTCACTTCT------------------ | 22 | 1 | - | - | - | |
| -------------------------------------------------------------TGTACTCACTTCTATTCCTCT---------- | 21 | - | 1 | - | - | |
| ----------------------------------TGGAAGATGAGACCAATGTGTC------------------------------------ | 22 | - | - | - | 1 | |
| --AGGCTTAAGATCATAGTCAGACACT----------------------------------------------------------------- | 25 | - | - | - | 1 | |
| ---------------------------------TTGGAAGATGAGACCAATGTG-------------------------------------- | 21 | - | - | - | 1 | |
| ----------------------------------TGGAAGATGAGACCAATGTG-------------------------------------- | 20 | - | - | - | 1 | |
| ---------------------------------TTGGAAGATGAGACCAAT----------------------------------------- | 18 | - | - | - | 1 | |
| --------------------------------------------------TGTGTCTACAGTGTACTCACT--------------------- | 21 | - | - | - | 1 | |
| rat | ctaggcttaagatcatagtcagacacttaaccaTTGGAAGATGAGACCAATGTGTCTacagtgtactcacttctattcctctttagtcctag | |||||
| ******************************************************************************************** | ||||||
| rat | (((((((.((((....(((.(((((((..((((((((.........)))))).))....))))).)).)))........)))).)).))))) | 0.560 -22.10 | ||||
| rat | chromosome:1:48366516:48366607:-1 | intergenic |
novel_cloningHIGH_multiarm_DicerNOK_loopOverlap_randfoldOK (1 loci)
sblock1281 [novel_cloningHIGH_multiarm_DicerNOK_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.35/0.48 | 18/25/0.91 | 0.0 0.4 1.3 1.0 | 0.0 0.0 0.0 0.5 | 2 35 7 2 | 0 0 0 0 | 1 3 2 2 | 0 0 0 0 | 28 42 21 12 | -7 -20 4 15 | 5arm_loop 5arm_loop_3arm 3arm 3arm | 2 5 5 5 | nd nd nd nd | 0.36 0.50 0.23 0.24 | 8 9 3 3 | 54 | 4 | 0 | 6 |
| reads | miRBase family seed | |||||
| seed | -------------------------------------------UGGAAGA------------------------------------------------------ | 25 | novel | |||
| seed | --------------------------------------------GGAAGAU----------------------------------------------------- | 18 | novel | |||
| seed | ------------------------------------------------------------GUGUCUA------------------------------------- | 4 | novel | |||
| seed | -----------------------------AGACACU-------------------------------------------------------------------- | 2 | novel | |||
| seed | --------------------------------------------------------------GUCUACG----------------------------------- | 1 | novel | |||
| seed | ---------------------------------------------------------------UCUACGG---------------------------------- | 1 | novel | |||
| seed | ----------------------------------------------------------------CUACGGU--------------------------------- | 1 | novel | |||
| seed | -------------------------------------------------------------------------ACUCACU------------------------ | 1 | novel | |||
| seed | -----------------------------------------------------------------------GUACUCA-------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T3S1 | T5S1 | |||
| ------------------------------------------TTGGAAGATGAGACCAATGTGTCT-------------------------------------- | 24 | - | 1 | 1 | 21 | |
| -------------------------------------------TGGAAGATGAGACCAATGTGTCT-------------------------------------- | 23 | - | - | - | 14 | |
| -----------------------------------------------------------TGTGTCTACGGTGTACTCACTTCT--------------------- | 24 | - | 1 | - | 3 | |
| -------------------------------------------TGGAAGATGAGACCAATGT------------------------------------------ | 19 | - | - | - | 2 | |
| ----------------------------CAGACACTCGACCATTGGAAGATGA--------------------------------------------------- | 25 | 2 | - | - | - | |
| -------------------------------------------TGGAAGATGAGACCAATGTG----------------------------------------- | 20 | - | - | - | 1 | |
| ------------------------------------------TTGGAAGATGAGACCAATGTG----------------------------------------- | 21 | - | - | - | 1 | |
| -------------------------------------------TGGAAGATGAGACCAATGTGTC--------------------------------------- | 22 | - | - | - | 1 | |
| ------------------------------------------TTGGAAGATGAGACCAAT-------------------------------------------- | 18 | - | - | - | 1 | |
| ---------------------------------------------------------------TCTACGGTGTACTCACTTCT--------------------- | 20 | - | 1 | - | - | |
| -------------------------------------------------------------TGTCTACGGTGTACTCACTTCT--------------------- | 22 | - | - | - | 1 | |
| ----------------------------------------------------------------------TGTACTCACTTCTATTCCTCT------------- | 21 | - | 1 | - | - | |
| --------------------------------------------------------------GTCTACGGTGTACTCACTTCT--------------------- | 21 | - | - | - | 1 | |
| ------------------------------------------------------------------------TACTCACTTCTATTCCTCTT------------ | 20 | 1 | - | - | - | |
| rat | cctctttgactaggagtatgatctaagtcagacactcgaccaTTGGAAGATGAGACCAATGTGTCTacggtgtactcacttctattcctctttagtcctagagg | |||||
| ******************************************************************************************************** | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000043702 ENSRNOG00000034080 RGD1563490_predicted | |||||
| rat | (((((..(((((((((((.((....(((.(((((((.(((((((((.........)))))).)))...))))).)).))))))))))))....))))..))))) | 0.990 -34.80 | ||||
| rat | chromosome:1:47838254:47838357:1 | Same_strand|Intronic_non-coding|ENSRNOT00000043702|ENSRNOG00000034080 ## ENSRNOG00000034080|protein_coding|RGD1563490_predicted| |
novel_cloningHIGH_multiarm_DicerNOK_mirtron (1 loci)
sblock11402 [novel_cloningHIGH_multiarm_DicerNOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.018 | no | no | 0.58/0.70 | 18/25/0.83 | 0.0 0.0 | 0.0 0.7 | 1 92 | 0 0 | 1 10 | 0 0 | 24 25 | 10 8 | 5arm 3arm | 1 1 | 18 0 | 0.26 0.21 | 2 2 | 235 | 10 | -1 | 0 |
| reads | miRBase family seed | |||||||||||
| seed | -------------------------------------------------------------------ACCCAGC--------------------------------------- | 215 | novel | |||||||||
| seed | -----------------------------------------------------------------UGACCCA----------------------------------------- | 11 | novel | |||||||||
| seed | ------------------------------------------------------------------GACCCAG---------------------------------------- | 8 | novel | |||||||||
| seed | -------------------------AGGGGCA--------------------------------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------------------------------------------------------------GACCCAGCCTCTCTGTCCCCA-------------------------- | 21 | 27 | 14 | 4 | 1 | 1 | 5 | 3 | 5 | 8 | 7 | |
| ------------------------------------------------------------------GACCCAGCCTCTCTGTCCCCAG------------------------- | 22 | 24 | 6 | - | 1 | 3 | - | 2 | - | 8 | 3 | |
| ------------------------------------------------------------------GACCCAGCCTCTCTGTCCCC--------------------------- | 20 | 17 | 7 | - | - | 5 | 1 | 1 | 1 | 5 | 7 | |
| ------------------------------------------------------------------GACCCAGCCTCTCTGTCCC---------------------------- | 19 | 10 | 5 | 1 | - | - | - | 1 | 1 | 4 | 2 | |
| ------------------------------------------------------------------GACCCAGCCTCTCTGTCC----------------------------- | 18 | 6 | 1 | - | - | 1 | - | 2 | - | 2 | - | |
| ------------------------------------------------------------------GACCCAGCCTCTCTGTCCCCAGC------------------------ | 23 | - | 5 | - | - | - | 2 | - | - | - | 5 | |
| ----------------------------------------------------------------TTGACCCAGCCTCTCTGTCCCCA-------------------------- | 23 | 4 | 1 | - | 2 | - | - | - | - | - | 1 | |
| -----------------------------------------------------------------TGACCCAGCCTCTCTGTCCCCA-------------------------- | 22 | 2 | 1 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------TGACCCAGCCTCTCTGTCCCC--------------------------- | 21 | 1 | - | - | - | 1 | - | - | - | - | - | |
| -----------------------------------------------------------------TGACCCAGCCTCTCTGTCCCCAG------------------------- | 23 | - | - | - | - | - | 1 | - | - | - | - | |
| ------------------------TAGGGGCAGGGGCAAGGGA---------------------------------------------------------------------- | 19 | - | 1 | - | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------TTGACCCAGCCTCTCTGTCCCCAG------------------------- | 24 | 1 | - | - | - | - | - | - | - | - | - | |
| ------------------------------------------------------------------GACCCAGCCTCTCTGTCCCCAGCAC---------------------- | 25 | - | 1 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------TGACCCAGCCTCTCTGTCC----------------------------- | 19 | - | - | - | - | 1 | - | - | - | - | - | |
| -----------------------------------------------------------------TGACCCAGCCTCTCTGTCCC---------------------------- | 20 | 1 | - | - | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------TTGACCCAGCCTCTCTGTC------------------------------ | 19 | - | - | - | - | - | 1 | - | - | - | - | |
| ----------------------------------------------------------------TTGACCCAGCCTCTCTGTCCCC--------------------------- | 22 | - | - | - | - | - | - | - | - | - | 1 | |
| rat | cctggctgtaagtgtagggaaaggtaggggcaggggcaagggattcaagtgccttcaaggaacattGACCCAGCCTCTCTGTCCCCAGcacctcagcatgggaactaccagga | |||||||||||
| ***************************************************************************************************************** | ||||||||||||
| >>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000042610 ENSRNOG00000029941 Grina | |||||||||||
| rat | (((((..((..((((.(((....((.(((((((((((..(((..((((((.((.....)).)).))))))).))))..))).)))).))..))).))))....))..))))). | 0.970 -42.80 | ||||||||||
| rat | chromosome:7:114278598:114278710:1 | Same_strand|Boundary_coding|ENSRNOT00000042610|ENSRNOG00000029941 ## Same_strand|Intronic_coding|ENSRNOT00000042610|ENSRNOG00000029941 ## ENSRNOG00000029941|protein_coding|Grina|glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 (glutamate binding) [Source:RefSeq_peptide;Acc:NP_695220] |
novel_cloningHIGH_multiarm_DicerNOK_mirtron_randfoldOK_nonpairedHIGH_bulgeHIGH (1 loci)
sblock5257 [novel_cloningHIGH_multiarm_DicerNOK_mirtron_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.42/0.70 | 18/24/0.78 | 0.0 0.0 | 0.0 1.7 | 4 98 | 0 0 | 1 10 | 0 0 | 19 5 | 27 21 | 5arm 3arm | 1 1 | 1 0 | 0.45 0.35 | 5 4 | 126 | 10 | 10 | 13 |
| reads | miRBase family seed | |||||||||||
| seed | ---------------------------------------------------------------------------------------------AACUCUU-------------------- | 116 | novel | |||||||||
| seed | --------------------UGAGAGC--------------------------------------------------------------------------------------------- | 4 | novel | |||||||||
| seed | -------------------------------------------------------------------------------------------CUAACUC---------------------- | 3 | novel | |||||||||
| seed | --------------------------------------------------------------------------------------------UAACUCU--------------------- | 1 | novel | |||||||||
| seed | -----------------------------------------------------------------------------------------CUCUAAC------------------------ | 1 | novel | |||||||||
| seed | ----------------------------------------------------------------------------------------------ACUCUUC------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --------------------------------------------------------------------------------------------TAACTCTTCCCTTGTGCCCTCAG----- | 23 | 19 | 13 | - | - | - | 1 | 1 | - | - | - | |
| --------------------------------------------------------------------------------------------TAACTCTTCCCTTGTGCCCTCA------ | 22 | 11 | 8 | - | 1 | - | 1 | 1 | 1 | - | 1 | |
| --------------------------------------------------------------------------------------------TAACTCTTCCCTTGTGCCC--------- | 19 | 7 | 11 | 1 | - | - | - | 1 | - | 1 | - | |
| --------------------------------------------------------------------------------------------TAACTCTTCCCTTGTGCCCTC------- | 21 | 7 | 8 | - | - | - | - | 1 | - | - | - | |
| --------------------------------------------------------------------------------------------TAACTCTTCCCTTGTGCCCT-------- | 20 | 8 | 6 | - | - | 1 | - | 1 | - | - | - | |
| --------------------------------------------------------------------------------------------TAACTCTTCCCTTGTGCC---------- | 18 | 1 | 4 | - | - | - | - | - | - | - | - | |
| -------------------GTGAGAGCGGGGGAGTGGCA--------------------------------------------------------------------------------- | 20 | 4 | - | - | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------------------------------TCTCTAACTCTTCCCTTGT------------- | 19 | - | 1 | - | - | - | - | - | - | - | - | |
| ------------------------------------------------------------------------------------------TCTAACTCTTCCCTTGTGCCCTC------- | 23 | 1 | - | - | - | - | - | - | - | - | - | |
| -------------------------------------------------------------------------------------------CTAACTCTTCCCTTGTGCCCTCA------ | 23 | - | 1 | - | - | - | - | - | - | - | - | |
| ------------------------------------------------------------------------------------------TCTAACTCTTCCCTTGTGCCCTCA------ | 24 | - | 1 | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------------------------------------AACTCTTCCCTTGTGCCCTCAG----- | 22 | - | - | - | - | 1 | - | - | - | - | - | |
| ------------------------------------------------------------------------------------------TCTAACTCTTCCCTTGTGC----------- | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| rat | gtcggaatctgaggtggaggtgagagcgggggagtggcaagtgagacagatgggcaagggctggttcagacggctagccctgcccagctctcTAACTCTTCCCTTGTGCCCTCAGgaggc | |||||||||||
| ************************************************************************************************************************ | ||||||||||||
| >>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>> | ENSRNOT00000019569 ENSRNOG00000014170 Dbn1 | |||||||||||
| >>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>> | ENSRNOT00000019393 ENSRNOG00000014170 Dbn1 | |||||||||||
| rat | (((....(((((((..((((..((((..(((((((...............(((((.((((((((((.....))))))))))))))))))))))..))))..))))....))))))).))) | 0.550 -55.86 | ||||||||||
| rat | chromosome:17:15204795:15204914:1 | Same_strand|Boundary_coding|ENSRNOT00000019393|ENSRNOG00000014170 ## Same_strand|Intronic_coding|ENSRNOT00000019569|ENSRNOG00000014170 ## ENSRNOG00000014170|protein_coding|Dbn1|Drebrin (Developmentally-regulated brain protein). [Source:UniProtKB/Swiss-Prot;Acc:Q07266] |
novel_cloningHIGH_multiarm_DicerNOK_shortStem (1 loci)
sblock3345 [novel_cloningHIGH_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.383 | no | no | 0.37/0.63 | 18/24/0.78 | 0.5 0.5 0.0 2.2 0.0 | 0.5 0.3 0.0 1.5 0.0 | 2 11 4 10 71 | 0 0 0 0 0 | 2 3 1 6 7 | 0 0 0 0 0 | 14 23 32 40 0 | 14 4 -4 -18 21 | 5arm 5arm 5arm_loop 3arm_loop 3arm | 2 2 2 2 2 | nd nd nd nd nd | 0.32 0.50 0.60 0.58 0.23 | 4 4 5 6 2 | 156 | 9 | 16 | 17 |
| reads | miRBase family seed | ||||||||||
| seed | ----------------------------------------------------------------------------CACACAG--------------- | 85 | novel | ||||||||
| seed | --------------------------------------------------------------------------------CAGGUCU----------- | 13 | novel | ||||||||
| seed | --------------------------AGCGAGU----------------------------------------------------------------- | 9 | novel | ||||||||
| seed | ---------------------------------------------------------------------------UCACACA---------------- | 6 | miR-377 | ||||||||
| seed | -----------------------------------------------------------------------------ACACAGG-------------- | 5 | novel | ||||||||
| seed | -----------------------------------------------GACCUUC-------------------------------------------- | 5 | novel | ||||||||
| seed | -----------------------------------------GUAUUUG-------------------------------------------------- | 5 | novel | ||||||||
| seed | ------------------------GUAGCGA------------------------------------------------------------------- | 5 | novel | ||||||||
| seed | ---------------------------------GGAACUC---------------------------------------------------------- | 5 | novel | ||||||||
| seed | -----------------------------------------------------CCAUGAA-------------------------------------- | 3 | novel | ||||||||
| seed | -------------------------------------------------------------------GCCCAGA------------------------ | 3 | novel | ||||||||
| seed | ------------------------------------------------ACCUUCC------------------------------------------- | 2 | novel | ||||||||
| seed | --------------------------------------------------CUUCCAU----------------------------------------- | 2 | novel | ||||||||
| seed | ---------------------------------------------UUGACCU---------------------------------------------- | 2 | novel | ||||||||
| seed | ----------------------GUGUAGC--------------------------------------------------------------------- | 1 | novel | ||||||||
| seed | ----------------AGCCCUG--------------------------------------------------------------------------- | 1 | miR-349 | ||||||||
| seed | ---------------CAGCCCU---------------------------------------------------------------------------- | 1 | novel | ||||||||
| seed | ----------------------------------------------------UCCAUGA--------------------------------------- | 1 | novel | ||||||||
| seed | -------------------------------------------------------------------------AGUCACA------------------ | 1 | novel | ||||||||
| seed | -----------------------UGUAGCG-------------------------------------------------------------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T5S1 | T5S2 | |||
| ---------------------------------------------------------------------------TCACACAGGTCTCGTGGACCAGA | 23 | 2 | 5 | 1 | 1 | 1 | - | - | 71 | 1 | |
| -------------------------------------------------------------------------------ACAGGTCTCGTGGACCAGA | 19 | - | - | - | - | - | - | - | 13 | - | |
| -------------------------TAGCGAGTGGAACTCTGTA------------------------------------------------------ | 19 | 1 | - | - | - | - | - | - | 8 | - | |
| ----------------------------------------------TGACCTTCCATGAAGAGCCT-------------------------------- | 20 | - | - | - | - | - | - | - | 5 | - | |
| -----------------------TGTAGCGAGTGGAACTCTGT------------------------------------------------------- | 20 | 1 | - | - | - | 1 | - | - | 3 | - | |
| --------------------------------------------------------------------------GTCACACAGGTCTCGTGGACCAGA | 24 | - | - | - | - | - | - | - | 5 | - | |
| ----------------------------------------------------------------------------CACACAGGTCTCGTGGACCAGA | 22 | - | - | - | - | - | - | - | 5 | - | |
| ----------------------------------------TGTATTTGACCTTCCATGAAGAG----------------------------------- | 23 | - | 1 | - | - | - | - | - | 3 | - | |
| --------------------------------TGGAACTCTGTATTTGACCT---------------------------------------------- | 20 | - | - | - | - | - | - | - | 4 | - | |
| ------------------------------------------------------------------TGCCCAGAGTCACACAGGTCTC---------- | 22 | - | - | 1 | - | - | - | - | 2 | - | |
| -----------------------------------------------GACCTTCCATGAAGAGCCT-------------------------------- | 19 | 1 | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------------CCTTCCATGAAGAGCCTTG------------------------------ | 19 | - | - | 1 | - | - | - | 1 | - | - | |
| ---------------------------------------------------------------------------TCACACAGGTCTCGTGGACCAG- | 22 | - | - | - | - | - | - | - | 1 | 1 | |
| --------------------------------------------TTTGACCTTCCATGAAGAG----------------------------------- | 19 | - | - | - | - | - | - | - | 2 | - | |
| --------------TCAGCCCTGTGTAGCGAGT----------------------------------------------------------------- | 19 | - | - | - | - | - | 1 | - | - | - | |
| --------------------------------TGGAACTCTGTATTTGACCTT--------------------------------------------- | 21 | - | - | - | - | - | - | - | 1 | - | |
| ----------------------GTGTAGCGAGTGGAACTCTGT------------------------------------------------------- | 21 | 1 | - | - | - | - | - | - | - | - | |
| ----------------------------------------------------TCCATGAAGAGCCTTGCCCA-------------------------- | 20 | - | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------TGTATTTGACCTTCCATGA--------------------------------------- | 19 | - | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------TCCATGAAGAGCCTTGCCC--------------------------- | 19 | - | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------------------------GAGTCACACAGGTCTCGTG------- | 19 | - | - | - | 1 | - | - | - | - | - | |
| --------------------------------------------------------------------------GTCACACAGGTCTCGTGGA----- | 19 | - | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------TCCATGAAGAGCCTTGCCCAGAG----------------------- | 23 | - | - | - | - | - | - | - | - | 1 | |
| ---------------CAGCCCTGTGTAGCGAGTG---------------------------------------------------------------- | 19 | - | 1 | - | - | - | - | - | - | - | |
| ---------------------TGTGTAGCGAGTGGAACTCTGT------------------------------------------------------- | 22 | - | - | - | - | - | - | - | 1 | - | |
| ---------------------------------------------------------------------------TCACACAGGTCTCGTGGA----- | 18 | - | - | - | - | - | - | - | 1 | - | |
| ---------------------------------------------------TTCCATGAAGAGCCTTGCCC--------------------------- | 20 | - | - | - | - | - | - | - | 1 | - | |
| rat | gtggtccccccacatcagccctgtgtagcgagtggaactctgtatttgaccttccatgaagagccttgcccagagTCACACAGGTCTCGTGGACCAGA | ||||||||||
| ************************************************************************************************** | |||||||||||
| rat | .((((((......((.((.(((((((.((....((..((((.....((......))...)))).....))....)).))))))).)).)))))))).. | 0.520 -26.50 | |||||||||
| rat | chromosome:12:44298982:44299079:-1 | intergenic |
novel_cloningHIGH_multiarm_DicerNOK_shortStem_nonpairedHIGH_bulgeHIGH (1 loci)
sblock6075 [novel_cloningHIGH_multiarm_DicerNOK_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.515 | no | no | 0.47/0.56 | 18/25/0.79 | 0.0 0.0 | 0.0 0.0 | 1 48 | 0 0 | 1 4 | 0 0 | 0 0 | 19 4 | 5arm 3arm | 2 2 | nd nd | 0.68 0.39 | 7 5 | 84 | 4 | 0 | -8 |
| reads | miRBase family seed | |||||
| seed | ----------------------------------------------------UGGCUGG---------------- | 72 | novel | |||
| seed | -------------------------------------------------------CUGGUAU------------- | 5 | novel | |||
| seed | -------------------------------------------ACAUUGU------------------------- | 3 | novel | |||
| seed | ---------------------------------------------------------GGUAUCG----------- | 2 | novel | |||
| seed | -----------------------------------------------------GGCUGGU--------------- | 1 | novel | |||
| seed | -CCACCAA------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S2 | T5S1 | |||
| ---------------------------------------------------TTGGCTGGTATCGGTGCTACAAGT | 24 | 3 | - | - | 48 | |
| ---------------------------------------------------TTGGCTGGTATCGGTGCT------ | 18 | - | - | 1 | 11 | |
| ------------------------------------------------------GCTGGTATCGGTGCTACAAGT | 21 | - | - | - | 5 | |
| ---------------------------------------------------TTGGCTGGTATCGGTGCTACA--- | 21 | - | - | - | 4 | |
| --------------------------------------------------------TGGTATCGGTGCTACAAGT | 19 | - | - | - | 2 | |
| ---------------------------------------------------TTGGCTGGTATCGGTGCTAC---- | 20 | 1 | - | - | 1 | |
| ------------------------------------------CACATTGTCTTGGCTGGTATCGGTG-------- | 25 | - | - | - | 2 | |
| ---------------------------------------------------TTGGCTGGTATCGGTGCTACAAG- | 23 | - | - | - | 1 | |
| CCCACCAAGCTGCTCTTTA-------------------------------------------------------- | 19 | - | - | 1 | - | |
| ------------------------------------------CACATTGTCTTGGCTGGTATCGGT--------- | 24 | - | - | - | 1 | |
| ----------------------------------------------------TGGCTGGTATCGGTGCTACAAGT | 23 | - | 1 | - | - | |
| ---------------------------------------------------TTGGCTGGTATCGGTGCTA----- | 19 | - | - | - | 1 | |
| ---------------------------------------------------TTGGCTGGTATCGGTGCTACAA-- | 22 | - | - | - | 1 | |
| rat | cccaccaagctgctctttacttggtgctggttgggttatatacacattgtcTTGGCTGGTATCGGTGCTACAAGT | |||||
| *************************************************************************** | ||||||
| rat | ........(((......(((.((((((..((..((.((.........)).))..))..))))))))).....))) | 0.800 -16.60 | ||||
| rat | chromosome:2:105729619:105729693:-1 | intergenic |
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