other hairpins
novel_cloningHIGH_multiarm_DicerNOK_shortStem_nonpairedHIGH_bulgeHIGH (1 loci)
novel_cloningHIGH_multiarm_shortStem (1 loci)
block1060963 [novel_cloningHIGH_multiarm_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.094 | no | no | 0.37/0.55 | 19/24/0.93 | 0.3 0.3 0.0 0.0 2.8 | 0.0 2.3 0.0 0.0 5.5 | 25 3 1 2 6 | 0 0 0 0 0 | 10 2 1 1 4 | 0 0 0 0 0 | 1 8 19 26 32 | 20 10 4 -5 -22 | 5arm 5arm 5arm 5arm_loop_3arm 5arm_loop_3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.43 0.40 0.16 0.33 0.30 | 8 8 2 4 4 | 54 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | --CCCAGUC--------------------------------------------------------------------------------------- | 27 | novel | |||||||||
| seed | ---CCAGUCU-------------------------------------------------------------------------------------- | 11 | novel | |||||||||
| seed | ---------------------------------ACAAUAG-------------------------------------------------------- | 4 | novel | |||||||||
| seed | -UCCCAGU---------------------------------------------------------------------------------------- | 3 | novel | |||||||||
| seed | ---------UAGAACC-------------------------------------------------------------------------------- | 2 | novel | |||||||||
| seed | ---------------------------CAUCAUA-------------------------------------------------------------- | 2 | novel | |||||||||
| seed | ------------------------------------------AGACCAC----------------------------------------------- | 1 | novel | |||||||||
| seed | -----AGUCUAG------------------------------------------------------------------------------------ | 1 | novel | |||||||||
| seed | --------------------CUAAGCC--------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | ----------AGAACCC------------------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | -----------------------------------------GAGACCA------------------------------------------------ | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -TCCCAGTCTAGAACCCACTCT-------------------------------------------------------------------------- | 21 | 1 | 1 | 1 | 1 | - | 1 | - | 1 | 18 | 2 | |
| --CCCAGTCTAGAACCCACTCT-------------------------------------------------------------------------- | 20 | - | 3 | - | - | 1 | - | - | - | 7 | - | |
| TTCCCAGTCTAGAACCCACTCT-------------------------------------------------------------------------- | 22 | - | - | - | - | - | - | 1 | - | 2 | - | |
| --------------------------------TACAATAGTGAGACCACTCTTAGT---------------------------------------- | 24 | - | - | - | - | - | - | - | - | 1 | 1 | |
| --------------------------CCATCATACAATAGTGAGACC------------------------------------------------- | 21 | - | - | - | - | - | - | - | - | 2 | - | |
| -----------------------------------------GAGACCACTCTTAGTTGGATGGT-------------------------------- | 23 | - | 1 | - | - | - | - | - | - | - | - | |
| --------------------------------TACAATAGTGAGACCACTCT-------------------------------------------- | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| --------CTAGAACCCACTCTAAGCCCATCA---------------------------------------------------------------- | 24 | - | - | 1 | - | - | - | - | - | - | - | |
| --------CTAGAACCCACTCTAAGCC--------------------------------------------------------------------- | 19 | - | - | 1 | - | - | - | - | - | - | - | |
| ----CAGTCTAGAACCCACTCTA------------------------------------------------------------------------- | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| -TCCCAGTCTAGAACCCACTC--------------------------------------------------------------------------- | 20 | - | - | - | 1 | - | - | - | - | - | - | |
| -------------------TCTAAGCCCATCATACAAT---------------------------------------------------------- | 19 | - | - | 1 | - | - | - | - | - | - | - | |
| ---------TAGAACCCACTCTAAGCCCA------------------------------------------------------------------- | 20 | 1 | - | - | - | - | - | - | - | - | - | |
| --------------------------------TACAATAGTGAGACCACTC--------------------------------------------- | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------TGAGACCACTCTTAGTTGGA------------------------------------ | 20 | - | - | - | - | - | - | 1 | - | - | - | |
| rat | tTCCCAGTCTAGAACCCACTCTaagcccatcatacaatagtgagaccactcttagttggatggtacgctctagggaccccataaaaggctaggagc | |||||||||||
| ************************************************************************************************ | ||||||||||||
| rat | ((((.(((((........(((((((((((((..((((.((((....)))).)).))..)))))...))).)))))..........))))).)))). | 0.690 -23.87 | ||||||||||
| rat | chromosome:20:5523128:5523223:-1 | intergenic |
novel_cloningHIGH_multiarm_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH (1 loci)
block996235 [novel_cloningHIGH_multiarm_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.543 | no | no | 0.39/0.54 | 19/25/0.70 | 1.7 4.0 | 0.7 6.2 | 25 4 | 0 0 | 9 2 | 0 0 | 1 21 | 16 -10 | 5arm 5arm_loop_3arm | 1 1 | nd nd | 0.43 0.38 | 6 6 | 54 | 9 | na | na |
| reads | miRBase family seed | ||||||||||
| seed | --GAACAAU------------------------------------------------------------------------------------- | 26 | novel | ||||||||
| seed | ---------ACCCAAG------------------------------------------------------------------------------ | 23 | novel | ||||||||
| seed | --------------------------CCAUCCU------------------------------------------------------------- | 2 | novel | ||||||||
| seed | ----------------------GUAUCCA----------------------------------------------------------------- | 1 | novel | ||||||||
| seed | --------------AGUUCCA------------------------------------------------------------------------- | 1 | novel | ||||||||
| seed | ------------------------------CCUUGUG--------------------------------------------------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -TGAACAATACCCAAGTTCCATGT---------------------------------------------------------------------- | 23 | - | 2 | - | 1 | - | 1 | - | 19 | 1 | |
| --------TACCCAAGTTCCATGTATC------------------------------------------------------------------- | 19 | 1 | 1 | - | - | 1 | - | 2 | 6 | 1 | |
| --------TACCCAAGTTCCATGTATCCATCC-------------------------------------------------------------- | 24 | - | - | - | - | - | - | 2 | 1 | - | |
| --------TACCCAAGTTCCATGTATCCATCCT------------------------------------------------------------- | 25 | 1 | - | 1 | - | - | - | - | 1 | - | |
| --------TACCCAAGTTCCATGTATCCA----------------------------------------------------------------- | 21 | 1 | - | - | 1 | - | - | - | 1 | - | |
| -TGAACAATACCCAAGTTCCA------------------------------------------------------------------------- | 20 | - | - | - | - | - | - | - | 2 | - | |
| --------TACCCAAGTTCCATGTATCC------------------------------------------------------------------ | 20 | 1 | - | - | - | - | - | - | 1 | - | |
| -------------------------TCCATCCTTGTGTCTCCATC------------------------------------------------- | 20 | - | - | - | - | 1 | - | - | - | - | |
| -------------------------TCCATCCTTGTGTCTCCATCCTCCT-------------------------------------------- | 25 | - | - | - | - | - | - | - | 1 | - | |
| ---------------------TGTATCCATCCTTGTGTCTC----------------------------------------------------- | 20 | - | - | - | - | - | - | - | 1 | - | |
| -------------AAGTTCCATGTATCCATCCT------------------------------------------------------------- | 20 | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------TCCTTGTGTCTCCATCCTCCTGGA----------------------------------------- | 24 | - | - | - | - | - | - | - | 1 | - | |
| rat | gTGAACAATACCCAAGTTCCATGTATCcatccttgtgtctccatcctcctggaaggcaagaagagttgttagtggtgtgctcaccttgattcac | ||||||||||
| ********************************************************************************************** | |||||||||||
| rat | ((((((((......(((.((((.......((.((.((((((((......)))).)))).)).)).......))))...)))....))).))))) | 0.760 -19.44 | |||||||||
| rat | chromosome:1:124853203:124853296:1 | intergenic |
novel_cloningHIGH_multiarm_shortStem_mirtron_randfoldOK (1 loci)
sblock815 [novel_cloningHIGH_multiarm_shortStem_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.56/0.71 | 18/26/0.83 | 0.0 0.0 0.0 | 1.4 0.4 1.3 | 298 218 17946 | 0 0 0 | 10 10 10 | 0 0 0 | 26 24 2 | -1 2 23 | 5arm 3arm 3arm | 1 1 1 | 23 22 0 | 0.21 0.19 0.25 | 1 1 3 | 31675 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | -------------------------------------------------------------------------------------AGCACCC------------------ | 30017 | novel | |||||||||
| seed | ----------------------------------------------------------------UCUACUC--------------------------------------- | 589 | novel | |||||||||
| seed | ---------------------------GUGGUGC---------------------------------------------------------------------------- | 552 | novel | |||||||||
| seed | ------------------------------------------------------------------------------------GAGCACC------------------- | 287 | novel | |||||||||
| seed | ----------------------------------------------------------------------------------------ACCCCAU--------------- | 148 | novel | |||||||||
| seed | ----------------------------UGGUGCA--------------------------------------------------------------------------- | 21 | novel | |||||||||
| seed | ---------------------------------------------------------------------------------------CACCCCA---------------- | 19 | novel | |||||||||
| seed | -----------------------------------------------------------------------------------AGAGCAC-------------------- | 15 | novel | |||||||||
| seed | --------------------------------------------------------------------------------------GCACCCC----------------- | 14 | novel | |||||||||
| seed | -----------------------------------------------------------------------------------------CCCCAUU-------------- | 4 | novel | |||||||||
| seed | -----------------------------------------------------------------CUACUCC-------------------------------------- | 3 | novel | |||||||||
| seed | -------------------------------------------------------------------------------------------CCAUUGG------------ | 2 | novel | |||||||||
| seed | -----------------------------GGUGCAG-------------------------------------------------------------------------- | 2 | novel | |||||||||
| seed | ---------------------------------------------------------------CUCUACU---------------------------------------- | 1 | novel | |||||||||
| seed | ------------------------------------------------------------------------------------------CCCAUUG------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------------------------------------------------------------------------------GAGCACCCCATTGGCTACCCACA--- | 23 | 2955 | 2230 | 63 | 39 | 179 | 88 | 281 | 394 | 840 | 532 | |
| ------------------------------------------------------------------------------------GAGCACCCCATTGGCTACCCAC---- | 22 | 2780 | 2119 | 63 | 41 | 187 | 51 | 173 | 406 | 557 | 437 | |
| ------------------------------------------------------------------------------------GAGCACCCCATTGGCTACCC------ | 20 | 1864 | 1459 | 62 | 26 | 91 | 36 | 194 | 300 | 366 | 207 | |
| ------------------------------------------------------------------------------------GAGCACCCCATTGGCTACCCACAG-- | 24 | 1980 | 1509 | 35 | 11 | 87 | 41 | 109 | 190 | 296 | 176 | |
| ------------------------------------------------------------------------------------GAGCACCCCATTGGCTACC------- | 19 | 1050 | 873 | 26 | 19 | 58 | 28 | 183 | 144 | 182 | 156 | |
| ------------------------------------------------------------------------------------GAGCACCCCATTGGCTAC-------- | 18 | 779 | 637 | 12 | 10 | 59 | 22 | 38 | 94 | 158 | 130 | |
| ------------------------------------------------------------------------------------GAGCACCCCATTGGCTACCCA----- | 21 | 709 | 533 | 14 | 11 | 47 | 14 | 53 | 111 | 121 | 112 | |
| ---------------------------------------------------------------CTCTACTCCCTGCCCCAGCCA-------------------------- | 21 | 44 | 130 | 1 | 5 | 9 | 2 | 26 | 30 | 38 | 36 | |
| --------------------------GGTGGTGCAGGCAGGAGAGCC--------------------------------------------------------------- | 21 | 77 | 42 | - | 3 | 1 | 1 | 6 | 6 | 15 | 14 | |
| ------------------------------------------------------------------------------------GAGCACCCCATTGGCTACCCACAGG- | 25 | 81 | 51 | 1 | - | 2 | 3 | 2 | 8 | 12 | 5 | |
| --------------------------GGTGGTGCAGGCAGGAGA------------------------------------------------------------------ | 18 | 46 | 43 | 2 | - | 2 | 1 | 7 | 11 | 11 | 10 | |
| ---------------------------------------------------------------CTCTACTCCCTGCCCCAGC---------------------------- | 19 | 24 | 33 | 2 | 2 | 4 | 3 | 16 | 11 | 10 | 13 | |
| --------------------------GGTGGTGCAGGCAGGAGAG----------------------------------------------------------------- | 19 | 36 | 29 | - | 1 | 5 | - | 4 | 4 | 15 | 14 | |
| ---------------------------------------------------------------------------------------CACCCCATTGGCTACCCACAG-- | 21 | 21 | 19 | 1 | 1 | 4 | - | 4 | 6 | 11 | 21 | |
| -----------------------------------------------------------------------------------AGAGCACCCCATTGGCTACCC------ | 21 | 33 | 24 | - | - | 2 | - | 5 | 4 | 5 | 7 | |
| --------------------------GGTGGTGCAGGCAGGAGAGCCA-------------------------------------------------------------- | 22 | 25 | 23 | 2 | - | 2 | 1 | 10 | 6 | 4 | 6 | |
| -----------------------------------------------------------------------------------AGAGCACCCCATTGGCTACCCACA--- | 24 | 40 | 14 | - | - | 1 | - | 2 | 1 | 4 | 2 | |
| ---------------------------------------------------------------CTCTACTCCCTGCCCCAGCCAGA------------------------ | 23 | 44 | 9 | 1 | 1 | 1 | - | - | 1 | - | 5 | |
| -----------------------------------------------------------------------------------AGAGCACCCCATTGGCTACCCAC---- | 23 | 25 | 16 | 1 | 1 | 1 | - | 4 | 2 | 7 | 5 | |
| --------------------------GGTGGTGCAGGCAGGAGAGC---------------------------------------------------------------- | 20 | 21 | 13 | 1 | 1 | 1 | 2 | - | 5 | 4 | 4 | |
| ---------------------------------------------------------------CTCTACTCCCTGCCCCAGCC--------------------------- | 20 | 10 | 18 | 2 | - | 3 | 2 | 1 | 3 | 3 | 3 | |
| ---------------------------------------------------------------CTCTACTCCCTGCCCCAG----------------------------- | 18 | 7 | 9 | - | - | - | - | 5 | 2 | 3 | 1 | |
| -----------------------------------------------------------------------------------AGAGCACCCCATTGGCTACCCA----- | 22 | 16 | 4 | 2 | - | 2 | - | 1 | - | 1 | 1 | |
| -----------------------------------------------------------------------------------AGAGCACCCCATTGGCTAC-------- | 19 | 6 | 11 | - | - | - | - | 2 | 1 | 1 | - | |
| -----------------------------------------------------------------------------------AGAGCACCCCATTGGCTA--------- | 18 | 9 | 7 | - | - | - | - | - | 2 | - | 2 | |
| ---------------------------------------------------------------------------------------CACCCCATTGGCTACCCACA--- | 20 | 9 | 5 | - | - | - | - | - | - | 3 | 3 | |
| ---------------------------------------------------------------------------------------CACCCCATTGGCTACCCA----- | 18 | 8 | 4 | - | - | - | - | - | 2 | 2 | - | |
| --------------------------GGTGGTGCAGGCAGGAGAGCCAT------------------------------------------------------------- | 23 | 4 | 4 | - | - | - | 3 | 1 | 1 | 1 | 1 | |
| ------------------------------------------------------------------------------------GAGCACCCCATTGGCTACCCACAGGT | 26 | 3 | 5 | - | 1 | 1 | 1 | - | - | 4 | - | |
| ---------------------------GTGGTGCAGGCAGGAGAGCCA-------------------------------------------------------------- | 21 | 3 | 6 | - | - | - | - | - | - | - | 5 | |
| ---------------------------------------------------------------CTCTACTCCCTGCCCCAGCCAG------------------------- | 22 | 3 | 3 | - | - | - | - | 3 | 1 | - | 4 | |
| ---------------------------------------------------------------------------------------CACCCCATTGGCTACCCAC---- | 19 | 5 | 4 | - | - | - | - | - | - | 2 | 2 | |
| -----------------------------------------------------------------------------------AGAGCACCCCATTGGCTACC------- | 20 | 4 | 2 | - | - | - | 1 | - | 1 | - | - | |
| --------------------------------------------------------------------------------------GCACCCCATTGGCTACCC------ | 18 | 5 | 2 | - | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------------------------CAGAGCACCCCATTGGCTACCC------ | 22 | 3 | 2 | - | - | - | - | 1 | - | - | - | |
| ---------------------------------------------------------------------------------------CACCCCATTGGCTACCCACAGG- | 22 | 1 | 1 | - | - | 1 | - | - | - | 2 | 1 | |
| -------------------------------------------------------------------------------------AGCACCCCATTGGCTACCCACAG-- | 23 | 2 | 1 | - | - | - | 1 | - | - | 2 | - | |
| --------------------------------------------------------------------------------------GCACCCCATTGGCTACCCACAG-- | 22 | 5 | - | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------------------------AGAGCACCCCATTGGCTACCCACAG-- | 25 | 3 | 2 | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------------------------------CACCCCATTGGCTACCCACAGGT | 23 | - | 2 | - | - | 1 | - | - | - | 2 | - | |
| -------------------------------------------------------------------------------------AGCACCCCATTGGCTACCCAC---- | 21 | 2 | - | 1 | - | - | - | - | - | - | 1 | |
| ----------------------------------------------------------------------------------CAGAGCACCCCATTGGCTACCCAC---- | 24 | 3 | 1 | - | - | - | - | - | - | - | - | |
| ---------------------------GTGGTGCAGGCAGGAGAGC---------------------------------------------------------------- | 19 | 2 | 1 | - | - | - | - | 1 | - | - | - | |
| -------------------------------------------------------------------------------------AGCACCCCATTGGCTACCCACA--- | 22 | - | 1 | - | 1 | - | - | - | 1 | - | 1 | |
| --------------------------------------------------------------------------------------GCACCCCATTGGCTACCCACA--- | 21 | - | 1 | - | - | - | - | - | - | - | 2 | |
| ---------------------------------------------------------------CTCTACTCCCTGCCCCAGCCAGAG----------------------- | 24 | 2 | - | - | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------------------------------ACCCCATTGGCTACCCACA--- | 19 | 1 | - | - | - | - | - | - | - | - | 1 | |
| --------------------------------------------------------------------------------------GCACCCCATTGGCTACCCA----- | 19 | - | - | - | - | - | - | - | - | 2 | - | |
| ----------------------------------------------------------------TCTACTCCCTGCCCCAGCCA-------------------------- | 20 | - | 1 | - | - | - | - | 1 | - | - | - | |
| ------------------------------------------------------------------------------------------CCCATTGGCTACCCACAG-- | 18 | - | 2 | - | - | - | - | - | - | - | - | |
| --------------------------------------------------------------------------------------GCACCCCATTGGCTACCCAC---- | 20 | 2 | - | - | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------------------------CAGAGCACCCCATTGGCTACCCACA--- | 25 | 1 | 1 | - | - | - | - | - | - | - | - | |
| ---------------------------GTGGTGCAGGCAGGAGAGCCAT------------------------------------------------------------- | 22 | 2 | - | - | - | - | - | - | - | - | - | |
| ----------------------------TGGTGCAGGCAGGAGAGCCATTGA---------------------------------------------------------- | 24 | - | - | - | - | - | - | - | - | 2 | - | |
| ----------------------------------------------------------------------------------CAGAGCACCCCATTGGCTACCCA----- | 23 | 1 | - | - | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------------------------CAGAGCACCCCATTGGCTAC-------- | 20 | - | 1 | - | - | - | - | - | - | - | - | |
| ---------------------------GTGGTGCAGGCAGGAGAG----------------------------------------------------------------- | 18 | - | - | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------------------------------------CAGAGCACCCCATTGGCTACC------- | 21 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------------------------------------------CCCCATTGGCTACCCACA--- | 18 | - | - | - | - | - | - | - | 1 | - | - | |
| ----------------------------------------------------------------TCTACTCCCTGCCCCAGCC--------------------------- | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| --------------------------------------------------------------GCTCTACTCCCTGCCCCAGCCA-------------------------- | 22 | - | - | - | - | - | - | - | 1 | - | - | |
| ----------------------------------------------------------------------------------------ACCCCATTGGCTACCCACAG-- | 20 | - | - | - | - | 1 | - | - | - | - | - | |
| ----------------------------------------------------------------------------------------ACCCCATTGGCTACCCAC---- | 18 | 1 | - | - | - | - | - | - | - | - | - | |
| rat | gcctgtgagtggccagggtggggctgggtggtgcaggcaggagagccattgatctattgcgggctctactccctgccccagccaGAGCACCCCATTGGCTACCCACAGgt | |||||||||||
| ************************************************************************************************************** | ||||||||||||
| >>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>> | ENSRNOT00000031423 ENSRNOG00000019192 NP_001101008.1 | |||||||||||
| >>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>> | ENSRNOT00000026047 ENSRNOG00000019192 NP_001101008.1 | |||||||||||
| rat | (((((((.((((((((((((...((((.(((.(((((.((.((((((..............)))))).)).))))).))).))))..)))))...))))))).))))))) | 1.000 -65.64 | ||||||||||
| rat | chromosome:1:158330153:158330262:-1 | Same_strand|Intronic_coding|ENSRNOT00000026047|ENSRNOG00000019192 ## Same_strand|Boundary_coding|ENSRNOT00000026047|ENSRNOG00000019192 ## Same_strand|Intronic_non-coding|ENSRNOT00000031423|ENSRNOG00000019192 ## Same_strand|Boundary_non-coding|ENSRNOT00000031423|ENSRNOG00000019192 ## ENSRNOG00000019192|protein_coding|NP_001101008.1|Rho guanine nucleotide exchange factor (GEF) 17 [Source:RefSeq_peptide;Acc:NP_001101008] |
novel_cloningHIGH_nonpairedHIGH (1 loci)
block1996680 [novel_cloningHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.090 | no | no | 0.35/0.39 | 18/23/0.84 | 0.0 | 0.0 | 43 | 0 | 3 | 0 | 13 | 5 | 3arm | 4 | nd | 0.36 | 3 | 57 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ----------------------------------------------UGCAUGA--------------------------- | 54 | novel | ||
| seed | ---------------------------------------------AUGCAUG---------------------------- | 3 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T4S1 | |||
| ---------------------------------------------ATGCATGATGACTACAACATTG------------- | 22 | 28 | 15 | 1 | |
| ---------------------------------------------ATGCATGATGACTACAAC----------------- | 18 | 3 | 5 | - | |
| --------------------------------------------CATGCATGATGACTACAACATTG------------- | 23 | 1 | 2 | - | |
| ---------------------------------------------ATGCATGATGACTACAACA---------------- | 19 | 1 | - | - | |
| ---------------------------------------------ATGCATGATGACTACAACAT--------------- | 20 | - | 1 | - | |
| rat | gccaataattacattgtgggttagaaaatgatgtctctctgagacATGCATGATGACTACAACATTGcgagtctgaggtc | ||||
| ******************************************************************************** | |||||
| rat | (((.....((.((.(((.(((((....((((((((((...))))))).)))..)))))...))).)).))......))). | 0.940 -19.00 | |||
| rat | chromosome:6:10975583:10975662:1 | intergenic |
novel_cloningHIGH_randfoldOK_nonpairedHIGH_bulgeHIGH (1 loci)
block2359595 [novel_cloningHIGH_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.43/0.50 | 18/21/0.70 | 0.0 | 0.0 | 410 | 0 | 10 | 0 | 35 | 0 | 3arm | 1 | nd | 0.35 | 4 | 830 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | ------------------------------------------------------------UCCAGUU----------------------------------------------- | 718 | miR-145 | |||||||||
| seed | -------------------------------------------------------------CCAGUUU---------------------------------------------- | 96 | novel | |||||||||
| seed | --------------------------------------------------------------CAGUUUU--------------------------------------------- | 15 | novel | |||||||||
| seed | -----------------------------------------------------------CUCCAGU------------------------------------------------ | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------------------------------------CTCCAGTTTTCCCAGGAATC----------------------------------- | 20 | 33 | 19 | 27 | 28 | 72 | 37 | 80 | 138 | 71 | 49 | |
| -----------------------------------------------------------CTCCAGTTTTCCCAGGAA------------------------------------- | 18 | 6 | 6 | 6 | 5 | 23 | 13 | 17 | 34 | 20 | 17 | |
| ------------------------------------------------------------TCCAGTTTTCCCAGGAATC----------------------------------- | 19 | 1 | 4 | 1 | 1 | 8 | 4 | 10 | 13 | 2 | 11 | |
| ------------------------------------------------------------TCCAGTTTTCCCAGGAAT------------------------------------ | 18 | 1 | 1 | - | 5 | 3 | 2 | 2 | 8 | 2 | 1 | |
| ------------------------------------------------------------TCCAGTTTTCCCAGGAATCA---------------------------------- | 20 | - | - | - | - | 5 | 4 | 2 | - | 1 | 3 | |
| -------------------------------------------------------------CCAGTTTTCCCAGGAATC----------------------------------- | 18 | 1 | 1 | - | - | 3 | 1 | 1 | 3 | - | 2 | |
| -----------------------------------------------------------CTCCAGTTTTCCCAGGAAT------------------------------------ | 19 | - | - | - | 1 | 4 | - | 2 | 3 | 1 | - | |
| -----------------------------------------------------------CTCCAGTTTTCCCAGGAATCA---------------------------------- | 21 | - | - | 1 | - | 1 | 1 | - | 2 | 1 | - | |
| -------------------------------------------------------------CCAGTTTTCCCAGGAATCA---------------------------------- | 19 | - | - | - | - | - | 2 | 1 | - | - | - | |
| ----------------------------------------------------------TCTCCAGTTTTCCCAGGAATC----------------------------------- | 21 | - | - | - | - | - | 1 | - | - | - | - | |
| ------------------------------------------------------------TCCAGTTTTCCCAGGAATCAT--------------------------------- | 21 | - | - | - | - | - | - | 1 | - | - | - | |
| rat | gtatataacatctccacaccattatgttatgatgagatggtgggatgatttggagtcgtCTCCAGTTTTCCCAGGAATCattgtgtggtggtaacagagatgttcaagtatatc | |||||||||||
| ****************************************************************************************************************** | ||||||||||||
| rat | ((((((((((((((...((((((((...(((((((.....(((((....((((((....))))))...)))))....)))))))))))))))....))))))))...)))))). | 1.000 -39.00 | ||||||||||
| rat | chromosome:8:117600857:117600970:-1 | intergenic |
novel_cloningHIGH_shortStem_5varHIGH (1 loci)
block1094018 [novel_cloningHIGH_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.603 | no | no | 0.50/0.62 | 18/24/0.72 | 4.2 | 2.5 | 47 | 0 | 5 | 0 | 0 | 7 | 3arm | 1 | nd | 0.26 | 2 | 67 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ------------------------------------------------------------GAGCAUC--------------- | 39 | novel | ||||
| seed | ------------------------------------------------------GGCAUUG--------------------- | 22 | novel | ||||
| seed | -------------------------------------------------------------AGCAUCA-------------- | 3 | novel | ||||
| seed | -----------------------------------------------------------UGAGCAU---------------- | 1 | novel | ||||
| seed | -----------------------------------------------------UGGCAUU---------------------- | 1 | novel | ||||
| seed | --------------------------------------------------------------GCAUCAC------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S1 | T4S1 | T5S1 | |||
| -----------------------------------------------------TGGCATTGAGCATCACTCCAGTG------ | 23 | - | 1 | - | - | 14 | |
| -----------------------------------------------------------TGAGCATCACTCCAGTGCGGAG- | 22 | 1 | 1 | - | - | 8 | |
| -----------------------------------------------------------TGAGCATCACTCCAGTGC----- | 18 | - | - | 1 | - | 8 | |
| -----------------------------------------------------------TGAGCATCACTCCAGTGCGGAGG | 23 | - | - | - | - | 9 | |
| -----------------------------------------------------------TGAGCATCACTCCAGTGCG---- | 19 | - | - | - | 1 | 8 | |
| -----------------------------------------------------TGGCATTGAGCATCACTCCA--------- | 20 | - | - | - | - | 3 | |
| -----------------------------------------------------TGGCATTGAGCATCACTCCAGT------- | 22 | 1 | - | - | - | 2 | |
| ------------------------------------------------------------GAGCATCACTCCAGTGCGGAG- | 21 | 1 | - | - | - | 1 | |
| -----------------------------------------------------------TGAGCATCACTCCAGTGCGGA-- | 21 | - | 1 | - | - | 1 | |
| ------------------------------------------------------------GAGCATCACTCCAGTGCGGA-- | 20 | - | 1 | - | - | - | |
| -------------------------------------------------------------AGCATCACTCCAGTGCGGAG- | 20 | - | - | - | - | 1 | |
| ----------------------------------------------------CTGGCATTGAGCATCACTCCAGTG------ | 24 | - | - | - | - | 1 | |
| -----------------------------------------------------TGGCATTGAGCATCACTCCAG-------- | 21 | - | - | - | - | 1 | |
| ----------------------------------------------------------TTGAGCATCACTCCAGTGC----- | 19 | - | - | - | 1 | - | |
| rat | cccacgagctagagacaggatgcagaaggggctgtgctcgccgtgagggtaccTGGCATTGAGCATCACTCCAGTGCGGAGG | ||||||
| ********************************************************************************** | |||||||
| rat | ((..((.(((.(((....(((((..((...(((((((((.......))))))..))).))..))))).))).))).))..)) | 0.560 -26.20 | |||||
| rat | chromosome:20:5556022:5556103:1 | intergenic |
novel_cloningHIGH_shortStem_loopOverlap_nonpairedHIGH (1 loci)
block2312170 [novel_cloningHIGH_shortStem_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.142 | no | no | 0.41/0.47 | 18/24/0.86 | 0.0 | 1.7 | 64 | 0 | 5 | 0 | 1 | -4 | 3arm_loop | 1 | nd | 0.33 | 3 | 77 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ------------------------------CCACAGA----------------- | 75 | novel | ||||
| seed | -------------------------------CACAGAU---------------- | 1 | novel | ||||
| seed | -----------------------------UCCACAG------------------ | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S2 | T5S1 | T5S2 | |||
| -----------------------------TCCACAGATAGAGCACTACAAAG-- | 23 | 1 | - | - | 24 | - | |
| -----------------------------TCCACAGATAGAGCACTACA----- | 20 | - | - | - | 23 | - | |
| -----------------------------TCCACAGATAGAGCACTACAAAGG- | 24 | - | - | 1 | 9 | - | |
| -----------------------------TCCACAGATAGAGCACTAC------ | 19 | - | 1 | - | 8 | - | |
| -----------------------------TCCACAGATAGAGCACTACAA---- | 21 | - | 1 | - | 3 | - | |
| -----------------------------TCCACAGATAGAGCACTACAAA--- | 22 | - | - | - | 2 | - | |
| -----------------------------TCCACAGATAGAGCACTA------- | 18 | - | - | - | 1 | 1 | |
| ----------------------------TTCCACAGATAGAGCACTAC------ | 20 | - | - | - | 1 | - | |
| ------------------------------CCACAGATAGAGCACTACAAA--- | 21 | - | - | - | 1 | - | |
| rat | gcctgaattggtcctacactctctgccctTCCACAGATAGAGCACTACAAAGGc | ||||||
| ****************************************************** | |||||||
| rat | ((((....((((.((...((.((((........)))).)))).))))...)))) | 0.990 -10.90 | |||||
| rat | chromosome:8:57748025:57748078:-1 | intergenic |
novel_cloningHIGH_shortStem_randfoldOK_nonpairedHIGH_bulgeHIGH (1 loci)
block873251 [novel_cloningHIGH_shortStem_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.39/0.50 | 18/23/0.86 | 0.0 | 0.0 | 53 | 0 | 10 | 0 | 1 | 9 | 3arm | 3 | nd | 0.39 | 7 | 130 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | --------------------------------------------------AUACCAG---------------- | 110 | novel | |||||||||
| seed | ---------------------------------------------------UACCAGG--------------- | 8 | novel | |||||||||
| seed | -------------------------------------------------UAUACCA----------------- | 3 | novel | |||||||||
| seed | -----------------------------------------------------CCAGGAU------------- | 3 | novel | |||||||||
| seed | ----------------------------------------------------ACCAGGA-------------- | 3 | novel | |||||||||
| seed | ------------------------------------------------CUAUACC------------------ | 2 | novel | |||||||||
| seed | ------------------------------------------------------CAGGAUG------------ | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------------------------------------------------TATACCAGGATGTCAGCATAGTT- | 23 | - | - | 1 | 3 | 23 | 18 | 1 | 12 | 2 | 4 | |
| -------------------------------------------------TATACCAGGATGTCAGCATAGT-- | 22 | 2 | 1 | 3 | 1 | 2 | - | 3 | 4 | 1 | - | |
| -------------------------------------------------TATACCAGGATGTCAGCATAG--- | 21 | 1 | 1 | - | 1 | 3 | 1 | 2 | 2 | - | - | |
| -------------------------------------------------TATACCAGGATGTCAGCA------ | 18 | - | - | 1 | - | 2 | 2 | 2 | 1 | - | - | |
| -------------------------------------------------TATACCAGGATGTCAGCATA---- | 20 | - | - | 1 | - | - | 2 | 1 | 1 | - | 1 | |
| --------------------------------------------------ATACCAGGATGTCAGCATAGTT- | 22 | - | - | - | 1 | - | 3 | - | - | - | 1 | |
| -------------------------------------------------TATACCAGGATGTCAGCAT----- | 19 | - | - | - | - | 2 | 1 | - | 1 | - | - | |
| ------------------------------------------------CTATACCAGGATGTCAGC------- | 18 | - | - | - | - | 1 | 2 | - | - | - | - | |
| ----------------------------------------------------ACCAGGATGTCAGCATAGTT- | 20 | - | - | - | - | 1 | 1 | - | - | - | - | |
| --------------------------------------------------ATACCAGGATGTCAGCATAG--- | 20 | - | 1 | - | - | 1 | - | - | - | - | - | |
| ---------------------------------------------------TACCAGGATGTCAGCATAGTT- | 21 | - | - | - | - | 1 | - | 1 | - | - | - | |
| -----------------------------------------------ACTATACCAGGATGTCAGC------- | 19 | - | - | - | - | - | 1 | - | - | - | - | |
| --------------------------------------------------ATACCAGGATGTCAGCATAGT-- | 21 | - | - | - | - | 1 | - | - | - | - | - | |
| -----------------------------------------------------CCAGGATGTCAGCATAGTT- | 19 | - | - | - | - | - | 1 | - | - | - | - | |
| ---------------------------------------------------TACCAGGATGTCAGCATAGT-- | 20 | - | - | - | - | 1 | - | - | - | - | - | |
| -----------------------------------------------ACTATACCAGGATGTCAGCA------ | 20 | - | - | - | - | 1 | - | - | - | - | - | |
| ----------------------------------------------------ACCAGGATGTCAGCATAGT-- | 19 | - | - | - | - | - | - | - | 1 | - | - | |
| rat | tagcaagttggcattctgggcctggttcatgtcaactcttgttgttaacTATACCAGGATGTCAGCATAGTTa | |||||||||||
| ************************************************************************* | ||||||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000014573 ENSRNOG00000010803 Gabra5 | |||||||||||
| rat | ......(((((((((((((...(((((.....((((....))))..)))))..)))))))))))))....... | 1.000 -26.80 | ||||||||||
| rat | chromosome:1:108889269:108889341:-1 | Same_strand|Intronic_coding|ENSRNOT00000014573|ENSRNOG00000010803 ## ENSRNOG00000010803|protein_coding|Gabra5|Gamma-aminobutyric acid receptor subunit alpha-5 precursor (GABA(A) receptor subunit alpha-5). [Source:UniProtKB/Swiss-Prot;Acc:P19969] |
novel_cloningOK_5varHIGH_mirtron (1 loci)
block68784 [novel_cloningOK_5varHIGH_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.604 | no | no | 0.37/0.43 | 19/24/0.89 | 1.8 | 1.8 | 18 | 0 | 7 | 0 | 20 | 2 | 3arm | 1 | 0 | 0.19 | 2 | 18 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | --------------------------------------------------------------------------UUACACA--------------------------------- | 7 | novel | ||||||
| seed | ----------------------------------------------------------------------AUACUUA------------------------------------- | 6 | novel | ||||||
| seed | -------------------------------------------------------------------------CUUACAC---------------------------------- | 3 | novel | ||||||
| seed | --------------------------------------------------------------------GGAUACU--------------------------------------- | 1 | novel | ||||||
| seed | -----------------------------------------------------------------------UACUUAC------------------------------------ | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | |||
| -------------------------------------------------------------------------CTTACACACTTGTCCATCTAG-------------------- | 21 | - | - | 2 | 1 | 1 | 2 | - | |
| ---------------------------------------------------------------------GATACTTACACACTTGTCCATCT---------------------- | 23 | 1 | 1 | - | - | - | - | - | |
| ---------------------------------------------------------------------GATACTTACACACTTGTCCA------------------------- | 20 | - | - | - | 1 | - | - | 1 | |
| ------------------------------------------------------------------------ACTTACACACTTGTCCATCTAG-------------------- | 22 | - | - | 2 | - | - | - | - | |
| -------------------------------------------------------------------AGGATACTTACACACTTGTCCATC----------------------- | 24 | - | - | - | - | - | - | 1 | |
| ----------------------------------------------------------------------ATACTTACACACTTGTCCA------------------------- | 19 | - | - | - | - | - | - | 1 | |
| -------------------------------------------------------------------------CTTACACACTTGTCCATCT---------------------- | 19 | - | - | - | - | 1 | - | - | |
| ---------------------------------------------------------------------GATACTTACACACTTGTCCATC----------------------- | 22 | - | - | 1 | - | - | - | - | |
| ------------------------------------------------------------------------ACTTACACACTTGTCCATCT---------------------- | 20 | - | - | 1 | - | - | - | - | |
| ---------------------------------------------------------------------GATACTTACACACTTGTCCAT------------------------ | 21 | - | - | 1 | - | - | - | - | |
| rat | tgatggctatggatttggttcggatagatttggaagaggtaaggtaagaattgaatttctcaattgaAGGATACTTACACACTTGTCCATCTAGacctcaattattgtttttca | ||||||||
| ****************************************************************************************************************** | |||||||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000004688 ENSRNOG00000003399 Hnrph1 | ||||||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000004572 ENSRNOG00000003399 Hnrph1 | ||||||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000059190 ENSRNOG00000003399 Hnrph1 | ||||||||
| rat | .((.(((.((((....((((..((......((((..((((...(((((.(((...((((......))))))).)))))..)))).))))))..))))....)))).)))..)). | 0.960 -21.10 | |||||||
| rat | chromosome:10:35926140:35926253:1 | Same_strand|Intronic_non-coding|ENSRNOT00000004572|ENSRNOG00000003399 ## Same_strand|Intronic_coding|ENSRNOT00000004688|ENSRNOG00000003399 ## ENSRNOG00000003399|protein_coding|Hnrph1|Heterogeneous nuclear ribonucleoprotein H (hnRNP H) (Ratsg1). [Source:UniProtKB/Swiss-Prot;Acc:Q8VHV7] |
novel_cloningOK_Multihit_5varHIGH_loopOverlap (1 loci)
block844630 [novel_cloningOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.593 | no | no | 0.41/0.50 | 20/24/1.00 | 1.5 0.0 | 3.5 0.0 | 2 6 | 0 0 | 1 3 | 0 0 | 15 10 | -1 11 | 3arm 3arm | 46 46 | nd nd | 0.25 0.65 | 3 11 | 10 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -----------------------------------------------AAAUCAG---------------------- | 8 | novel | ||
| seed | -----------------------------------AGUCCUA---------------------------------- | 1 | novel | ||
| seed | --------------------------------------CCUAGAG------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S1 | |||
| ----------------------------------------------GAAATCAGCAAGGGTAGAGA---------- | 20 | - | 1 | 6 | |
| ----------------------------------TAGTCCTAGAGGGAAATCAG---------------------- | 20 | - | - | 1 | |
| -------------------------------------TCCTAGAGGGAAATCAGCAAGGGT--------------- | 24 | - | - | 1 | |
| ----------------------------------------------GAAATCAGCAAGGGTAGAGAAT-------- | 22 | 1 | - | - | |
| rat | atgtgtctatgttgtgttcacttctattcctatttagtcctagaggGAAATCAGCAAGGGTAGAGAatgggaccgt | ||||
| **************************************************************************** | |||||
| -------------------------------------------------------------------------------------- | ENSRNOT00000041575 ENSRNOG00000031160 LOC685793 | ||||
| rat | (((.((((.(((((..(((.((((((...((....))...)))))))))..))))).............))))))) | 0.610 -13.54 | |||
| rat | chromosome:1:50293350:50293425:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000049496|ENSRNOG00000031160 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000041575|ENSRNOG00000031160 ## ENSRNOG00000031160|protein_coding|LOC685793| |
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